MD05G1012300.v1.1

sugar transmembrane transporter activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0017984
Physical Location & Seq
Reverse (-)
2470680 .. 2471458
779 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1012300.v1.1.491

Sequence Viewer

Length: 258 bp
ATGATGAAGAATAAGTTCACAGAGCAGTTCTTCTTGGGCATCCCATACCTGATGACTCTGCTCAACTGCCTCATTACAACCGCTTGGTATTGCCTGCCATTTGTGTCTCCATGCAGCATATTGGTATCGACAGTCAATACTATCGGGGCAGCTCTTGAATCCATATACCTGTTGATCTTCGTCACATTGGCCCCCAAAAGAGAAAAAGAAAAAATTATTGAGCTCCTCACTTTTGTGCTCTCTTTTAAGCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MtN3_slv

Protein Analysis

86

Amino Acids

9.74

Weight (kDa)

8.52

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017984)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14850
malus_domestica MD05G1012300.v1.1
prunus_persica Prupe.8G017500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0277421
rosa_laevigata RLG00000013304
rosa_roxburghii Rroxscaffold_7G00191350
rosa_samantha Rh6AG218800 Rh6BG222700 Rh6CG225300 Rh6DG215600
rosa_wichuraiana Rw6G019170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AgsI TTSAA 1 cut(s) 158
AleI CACNNNNGTG 1 cut(s) 233
AluBI AGCT 2 cut(s) 152, 223
AluI AGCT 2 cut(s) 152, 223
Alw21I GWGCWC 2 cut(s) 225, 240
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 114, 149
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 225, 240
BbvI GCAGC 2 cut(s) 126, 161
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 2 cut(s) 115, 150
BlsI GCNGC 2 cut(s) 116, 151
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 1 cut(s) 48
BseGI GGATG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 126, 161
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 225, 240
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 225, 240
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 192
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 2 cut(s) 133, 255
BstC8I GCNNGC 1 cut(s) 95
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 126, 161
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 190
CviAII CATG 1 cut(s) 111
CviJI RGCY 3 cut(s) 152, 191, 223
CviKI_1 RGCY 3 cut(s) 152, 191, 223
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 1 cut(s) 114
FaiI YATR 5 cut(s) 46, 112, 119, 164, 166
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 115, 150
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 115, 150
GluI GCNGC 2 cut(s) 115, 150
HaeIII GGCC 1 cut(s) 191
Hin1II CATG 1 cut(s) 114
HinfI GANTC 2 cut(s) 55, 158
Hpy166II GTNNAC 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 18
HpyCH4III ACNGT 2 cut(s) 133, 255
HpyCH4V TGCA 1 cut(s) 114
Hsp92II CATG 1 cut(s) 114
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 3 cut(s) 62, 107, 182
Lsp1109I GCAGC 2 cut(s) 126, 161
LweI GCATC 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 3 cut(s) 19, 22, 169
MhlI GDGCHC 2 cut(s) 225, 240
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 2 cut(s) 80, 236
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 233
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 181
OliI CACNNNNGTG 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 116, 151
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 115, 150
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 2 cut(s) 225, 240
SetI ASST 4 cut(s) 51, 154, 171, 225
SfaNI GCATC 1 cut(s) 48
SgeI CNNG 8 cut(s) 46, 61, 96, 106, 123, 157, 167, 181
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 1 cut(s) 213
SsiI CCGC 1 cut(s) 81
SstI GAGCTC 1 cut(s) 225
TaaI ACNGT 2 cut(s) 133, 255
TaqI TCGA 1 cut(s) 128
TasI AATT 1 cut(s) 213
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 114, 149
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.