Rh6DG215600

Mediates both low-affinity uptake and efflux of sugar across the membrane

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
38527990 .. 38529781
1792 bp
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UTR
Exon/CDS
Intron
Rh6DG215600.1

Sequence Viewer

Length: 300 bp
ATGAGTAAAGTAAAACAAATCATAAAGAACAAGTTTACAGAGCAGCTCTCAAGCATTTCGTACCAGATCACTTTTTTCAAGCGCCTCCTTTCTGCTTGGTATCGCTTGCCCTATGTGTCACCAAACAACATTTTCATATCAAGCATCAATGGCATTGGTGCAGCTATTGAAGCCATGAACCTGCTCATCCTCATGATGTTTGCCCCGAAGAGTGAGAAGGAACAACTTCTTGAATTGCTCCCGTTTGTATTCTCGTTTAAGCACGATGAGAAATCCAAAGAATTATCTAAACCACACTAA

Protein Analysis

99

Amino Acids

11.48

Weight (kDa)

9.6

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017984)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g14850
malus_domestica MD05G1012300.v1.1
prunus_persica Prupe.8G017500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0277421
rosa_laevigata RLG00000013304
rosa_roxburghii Rroxscaffold_7G00191350
rosa_samantha Rh6AG218800 Rh6BG222700 Rh6CG225300 Rh6DG215600
rosa_wichuraiana Rw6G019170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 189
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 3 cut(s) 79, 170, 233
AluBI AGCT 2 cut(s) 46, 164
AluI AGCT 2 cut(s) 46, 164
ApeKI GCWGC 2 cut(s) 43, 161
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 111
BbvI GCAGC 2 cut(s) 55, 173
BfoI RGCGCY 1 cut(s) 85
BfuAI ACCTGC 1 cut(s) 189
BisI GCNGC 2 cut(s) 44, 162
BlsI GCNGC 2 cut(s) 45, 163
BmsI GCATC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 1 cut(s) 34
BseGI GGATG 1 cut(s) 186
BseXI GCAGC 2 cut(s) 55, 173
BsgI GTGCAG 1 cut(s) 180
Bsp143I GATC 1 cut(s) 66
BspHI TCATGA 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 189
BssMI GATC 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 150, 170
BstV1I GCAGC 2 cut(s) 55, 173
BtsCI GGATG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 107
CciI TCATGA 1 cut(s) 192
CfoI GCGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 61
CviAII CATG 2 cut(s) 175, 193
CviJI RGCY 3 cut(s) 46, 164, 173
CviKI_1 RGCY 3 cut(s) 46, 164, 173
CviQI GTAC 1 cut(s) 61
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
FaeI CATG 2 cut(s) 178, 196
FaiI YATR 5 cut(s) 23, 114, 137, 176, 194
FatI CATG 2 cut(s) 174, 192
Fnu4HI GCNGC 2 cut(s) 44, 162
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 2 cut(s) 44, 162
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 44, 162
HaeII RGCGCY 1 cut(s) 85
HhaI GCGC 1 cut(s) 84
Hin1II CATG 2 cut(s) 178, 196
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 36
Hpy188III TCNNGA 2 cut(s) 193, 230
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 170
Hsp92II CATG 2 cut(s) 178, 196
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 2 cut(s) 77, 194
Lsp1109I GCAGC 2 cut(s) 55, 173
LweI GCATC 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 117
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 220
MluCI AATT 2 cut(s) 233, 281
MnlI CCTC 2 cut(s) 95, 200
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 150, 170
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 178, 196
NmuCI GTSAC 1 cut(s) 117
PagI TCATGA 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 45, 163
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 44, 162
Sau3AI GATC 1 cut(s) 66
SetI ASST 3 cut(s) 48, 166, 183
SfaNI GCATC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 2 cut(s) 233, 281
TasI AATT 2 cut(s) 233, 281
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TseFI GTSAC 1 cut(s) 117
TseI GCWGC 2 cut(s) 43, 161
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 2 cut(s) 124, 191
XmnI GAANNNNTTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.