Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014013

Physical Location & Seq

Genomic Coordinates Reverse (-)

3938491 .. 3941270

Gene Structure 2780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1024000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCGAGTGAGGAAGAGAGCGCCGTGAAGGAGCCGTTGGATCTGATAAGGCTTAGCCTCGACGAGCGCATCTACGTCAAGCTTCGCTCCGACCGAGAGCTGCGCGGTAAACTCCATGCTTATGATCAACACTTAAATATGATTCTTGGTGATGTTGAAGAAGTTGTTACATCTGTAGAAATTGATGATGAAACTTATGAAGAGATTGTCCGGACTACAAAGCGGATGGTTCCTTTTCTCTTTGTCAGAGGAGACGGTGTCATCCTTGTTTCACCTCCTTTAAGAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070925 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

98

Amino Acids

11.16

Weight (kDa)

4.78

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	16 - 92	3.4e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21190 AT1G76860
fragaria_vesca	FvH4_2g13861
malus_domestica	MD05G1024000.v1.1 MD10G1024500.v1.1
prunus_persica	Prupe.3G148200_v2.0.a1 Prupe.8G028400_v2.0.a1
pyrus_communis	pycom10g01630
rosa_chinensis	RchiOBHm_Chr6g0275571
rosa_multiflora	Rmu_ssc0000162.1_g000017
rosa_roxburghii	Rroxscaffold_7G00193180
rosa_rugosa	Rorug06G0094100
rosa_samantha	Rh6AG206500 Rh6BG209500 Rh6CG211800 Rh6DG202100
rosa_wichuraiana	Rw6G017930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	2 cut(s)	105, 223
AclWI	GGATC	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	82, 100, 290
AluI	AGCT	3 cut(s)	82, 100, 290
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	100
AspLEI	GCGC	3 cut(s)	23, 69, 105
AsuHPI	GGTGA	2 cut(s)	161, 264
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	2 cut(s)	8, 19
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	1 cut(s)	101
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	33, 231
BmsI	GCATC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
BseAI	TCCGGA	1 cut(s)	210
BseGI	GGATG	2 cut(s)	231, 261
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	105
Bsh1285I	CGRYCG	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	246
BsmBI	CGTCTC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	40, 124
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	105, 223
BspEI	TCCGGA	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	33, 231
BspPI	GGATC	1 cut(s)	48
BssMI	GATC	2 cut(s)	40, 124
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	2 cut(s)	9, 195
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	231, 261
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	23, 69, 105
BstKTI	GATC	2 cut(s)	43, 127
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	40, 124
BstMCI	CGRYCG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtsCI	GGATG	2 cut(s)	231, 261
CfoI	GCGC	3 cut(s)	23, 69, 105
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	6 cut(s)	34, 52, 57, 82, 100, 290
CviKI_1	RGCY	6 cut(s)	34, 52, 57, 82, 100, 290
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	42, 126
DpnII	GATC	2 cut(s)	40, 124
Eam1104I	CTCTTC	2 cut(s)	9, 195
EarI	CTCTTC	2 cut(s)	9, 195
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	119
FaiI	YATR	4 cut(s)	117, 123, 140, 198
FalI	AAGNNNNNCTT	1 cut(s)	274
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	238, 248
Fsp4HI	GCNGC	1 cut(s)	101
GlaI	GCGC	3 cut(s)	22, 68, 104
GluI	GCNGC	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	3 cut(s)	23, 69, 105
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	3 cut(s)	21, 67, 103
HinP1I	GCGC	3 cut(s)	21, 67, 103
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	2 cut(s)	161, 264
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	45, 91, 248
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	75
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	3 cut(s)	21, 67, 103
Kpn2I	TCCGGA	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	40, 124
LmnI	GCTCC	2 cut(s)	31, 92
LpnPI	CCDG	1 cut(s)	224
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	42, 126
MboI	GATC	2 cut(s)	40, 124
MboII	GAAGA	3 cut(s)	26, 170, 212
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	1 cut(s)	180
MmeI	TCCRAC	2 cut(s)	18, 114
MnlI	CCTC	4 cut(s)	4, 68, 242, 285
MroI	TCCGGA	1 cut(s)	210
MseI	TTAA	2 cut(s)	134, 281
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	211
MvnI	CGCG	1 cut(s)	105
NdeII	GATC	2 cut(s)	40, 124
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	33, 231
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	142
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	33, 231
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	134, 281
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	40, 124
SetI	ASST	5 cut(s)	78, 84, 102, 277, 292
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	2 cut(s)	105, 223
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	134, 281
Tru9I	TTAA	2 cut(s)	134, 281
TseI	GCWGC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	204, 213
Tth111I	GACNNNGTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.