Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014013

Physical Location & Seq

Genomic Coordinates Forward (+)

35210585 .. 35213826

Gene Structure 3242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG211800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCGAGTGAGGAAGAGAGCGCTGTGAAGGAGCCTTTGGATCTGATAAGGCTCAGCCTCGACGAGCGCATTTACGTCAAGCTCCGCTCTGACCGTGAGCTCCGCGGTAAACTCCATGCTTATGATCAACATTTAAATATGATTCTTGGTGACGTGGAAGAAATTGTTACCTCTGTGGAAATTGATGATGAAACTTATGAAGAGATTGTCCGGGTATGTTTCAAATTCAGTGTCTGTTGTCTTGTCATTATATATATGTACATTTGCAATTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070925 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

91

Amino Acids

10.75

Weight (kDa)

4.55

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	16 - 59	4.7e-14	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21190 AT1G76860
fragaria_vesca	FvH4_2g13861
malus_domestica	MD05G1024000.v1.1 MD10G1024500.v1.1
prunus_persica	Prupe.3G148200_v2.0.a1 Prupe.8G028400_v2.0.a1
pyrus_communis	pycom10g01630
rosa_chinensis	RchiOBHm_Chr6g0275571
rosa_multiflora	Rmu_ssc0000162.1_g000017
rosa_roxburghii	Rroxscaffold_7G00193180
rosa_rugosa	Rorug06G0094100
rosa_samantha	Rh6AG206500 Rh6BG209500 Rh6CG211800 Rh6DG202100
rosa_wichuraiana	Rw6G017930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	85, 103, 105
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	224
AfaI	GTAC	1 cut(s)	260
AfeI	AGCGCT	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	82, 100
AluI	AGCT	2 cut(s)	82, 100
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	1 cut(s)	234
Aor51HI	AGCGCT	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
AspLEI	GCGC	2 cut(s)	23, 69
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	24
BlpI	GCTNAGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	212
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	40, 124
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	3 cut(s)	85, 103, 105
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	48
BsrBI	CCGCTC	1 cut(s)	87
BsrGI	TGTACA	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	40, 124
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	9, 195
BstAUI	TGTACA	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	23, 69
BstKTI	GATC	2 cut(s)	43, 127
BstMBI	GATC	2 cut(s)	40, 124
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	235
CaiI	CAGNNNCTG	1 cut(s)	234
CfoI	GCGC	2 cut(s)	23, 69
Cfr42I	CCGCGG	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	5 cut(s)	34, 52, 57, 82, 100
CviKI_1	RGCY	5 cut(s)	34, 52, 57, 82, 100
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	42, 126
DpnII	GATC	2 cut(s)	40, 124
DraI	TTTAAA	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	9, 195
EarI	CTCTTC	2 cut(s)	9, 195
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco47III	AGCGCT	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	119
FaiI	YATR	9 cut(s)	117, 123, 140, 198, 217, 251, 253, 255, 257
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	102
GlaI	GCGC	2 cut(s)	22, 68
HaeII	RGCGCY	1 cut(s)	24
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	2 cut(s)	23, 69
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	21, 67
HinP1I	GCGC	2 cut(s)	21, 67
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	45, 91
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	2 cut(s)	75, 153
HpyCH4V	TGCA	1 cut(s)	267
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	75, 153
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	2 cut(s)	21, 67
Ksp22I	TGATCA	1 cut(s)	124
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	40, 124
LmnI	GCTCC	3 cut(s)	31, 87, 105
LpnPI	CCDG	1 cut(s)	224
MaeII	ACGT	2 cut(s)	75, 153
MaeIII	GTNAC	2 cut(s)	149, 166
MalI	GATC	2 cut(s)	42, 126
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	2 cut(s)	40, 124
MboII	GAAGA	3 cut(s)	26, 170, 212
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	162, 180, 224, 268
MnlI	CCTC	3 cut(s)	4, 68, 181
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	268
MvnI	CGCG	1 cut(s)	105
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	40, 124
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	142
Psp124BI	GAGCTC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	102
SacII	CCGCGG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	40, 124
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	5 cut(s)	78, 84, 102, 156, 173
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SmiI	ATTTAAAT	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	4 cut(s)	162, 180, 224, 268
SsiI	CCGC	3 cut(s)	85, 103, 105
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	210
SwaI	ATTTAAAT	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	2 cut(s)	78, 156
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	162, 180, 224, 268
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	235
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	204, 213
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.