Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014013

Physical Location & Seq

Genomic Coordinates Forward (+)

36057008 .. 36084779

Gene Structure 27772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG202100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGAGTGAGGAAGAGAGCGCGGTGAAGGAGCCTTTGGATCTGATAAGGCTTAGCCTCGACGAGCGCATTTACGTCAAGCTCCGCTCTGACCGTGAGCTCCGCGGTAAACTCCATGCTTATGATCAACATTTAAATATGATTCTTGGTGACGTGGAAGAAATTGTTACCTCTGTGGAAATTGATGATGAAACTTATGAAGAGATTGTCCGGGTATTTTCTATAGCTATCTCATACTTGCATCTGCTTTTATTGTGGAAAAGGATAGAGTCAAGTGTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005688 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0032991 GO:0033962 GO:0034622 GO:0034641 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070925 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 ko03040 map03018 map03040

Pfam Domains

Protein Families

LSM

Protein Analysis

94

Amino Acids

11.02

Weight (kDa)

4.69

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	16 - 59	5.5e-14	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21190 AT1G76860
fragaria_vesca	FvH4_2g13861
malus_domestica	MD05G1024000.v1.1 MD10G1024500.v1.1
prunus_persica	Prupe.3G148200_v2.0.a1 Prupe.8G028400_v2.0.a1
pyrus_communis	pycom10g01630
rosa_chinensis	RchiOBHm_Chr6g0275571
rosa_multiflora	Rmu_ssc0000162.1_g000017
rosa_roxburghii	Rroxscaffold_7G00193180
rosa_rugosa	Rorug06G0094100
rosa_samantha	Rh6AG206500 Rh6BG209500 Rh6CG211800 Rh6DG202100
rosa_wichuraiana	Rw6G017930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	2 cut(s)	23, 105
AciI	CCGC	4 cut(s)	23, 85, 103, 105
AclWI	GGATC	1 cut(s)	48
AjiI	CACGTC	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	82, 100, 227
AluI	AGCT	3 cut(s)	82, 100, 227
Alw21I	GWGCWC	1 cut(s)	102
AlwI	GGATC	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	23, 69
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	37, 161
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	222
BlpI	GCTNAGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	250
Bpu1102I	GCTNAGC	1 cut(s)	53
BpuMI	CCSGG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	103
Bsh1236I	CGCG	2 cut(s)	23, 105
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	40, 124
Bsp1720I	GCTNAGC	1 cut(s)	53
BspACI	CCGC	4 cut(s)	23, 85, 103, 105
BspFNI	CGCG	2 cut(s)	23, 105
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	48
BsrBI	CCGCTC	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	40, 124
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	9, 195
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	103
BstFNI	CGCG	2 cut(s)	23, 105
BstHHI	GCGC	2 cut(s)	23, 69
BstKTI	GATC	2 cut(s)	43, 127
BstMBI	GATC	2 cut(s)	40, 124
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	222
BstUI	CGCG	2 cut(s)	23, 105
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	154
CfoI	GCGC	2 cut(s)	23, 69
Cfr42I	CCGCGG	1 cut(s)	106
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	6 cut(s)	34, 52, 57, 82, 100, 227
CviKI_1	RGCY	6 cut(s)	34, 52, 57, 82, 100, 227
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	42, 126
DpnII	GATC	2 cut(s)	40, 124
DraI	TTTAAA	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	9, 195
EarI	CTCTTC	2 cut(s)	9, 195
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	1 cut(s)	119
FaiI	YATR	6 cut(s)	117, 123, 140, 198, 224, 235
FatI	CATG	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	102
GlaI	GCGC	2 cut(s)	22, 68
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	2 cut(s)	23, 69
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	21, 67
HinP1I	GCGC	2 cut(s)	21, 67
HinfI	GANTC	2 cut(s)	142, 269
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	2 cut(s)	37, 161
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	45, 91
Hpy8I	GTNNAC	1 cut(s)	110
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	2 cut(s)	75, 153
HpyCH4V	TGCA	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	75, 153
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	2 cut(s)	21, 67
Ksp22I	TGATCA	1 cut(s)	124
KspI	CCGCGG	1 cut(s)	106
Kzo9I	GATC	2 cut(s)	40, 124
LmnI	GCTCC	3 cut(s)	31, 87, 105
LpnPI	CCDG	1 cut(s)	224
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	2 cut(s)	75, 153
MaeIII	GTNAC	2 cut(s)	149, 166
MalI	GATC	2 cut(s)	42, 126
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	2 cut(s)	40, 124
MboII	GAAGA	3 cut(s)	26, 170, 212
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	162, 180
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	4, 68, 181
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	105
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	1 cut(s)	212
MvnI	CGCG	2 cut(s)	23, 105
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	40, 124
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	102
SacII	CCGCGG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	40, 124
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	6 cut(s)	78, 84, 102, 156, 173, 229
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	222
Sfr303I	CCGCGG	1 cut(s)	106
SgrBI	CCGCGG	1 cut(s)	106
SmiI	ATTTAAAT	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	162, 180
SsiI	CCGC	4 cut(s)	23, 85, 103, 105
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	210
SwaI	ATTTAAAT	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	2 cut(s)	78, 156
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	162, 180
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	204, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.