MD05G1168100.v1.1

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0020395
Physical Location & Seq
Forward (+)
29833721 .. 29833924
204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1168100.v1.1.491

Sequence Viewer

Length: 204 bp
ATGAAGAAACAGCAGGTGCCACTGCTCATGATTCCCAAGGATGTGAACCTAGAGTATCTTGTTAAGTTGGTGAAGGAAGGGAAGCTGAAGCCAGTGATTGACTCGATGCATCCTCTGAGCCAGGTTGAAGATGCTTGGCTTAAGAGTATCGATGGCCATGCTACTGGGAATATCATTTTAAGCTTAGCTGAAGCATTTAGTTGA

Protein Analysis

68

Amino Acids

7.47

Weight (kDa)

6.71

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 8 - 60 4.4e-10 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020395)

Species Orthologous Gene IDs
malus_domestica MD05G1168100.v1.1 MD05G1168500.v1.1
pyrus_communis pycom05g15590 pycom05g15640
rosa_multiflora Rmu_sc0001521.1_g000001
rosa_roxburghii Rroxscaffold_7G00185260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 4
Acc36I ACCTGC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 107
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 3 cut(s) 85, 183, 188
AluI AGCT 3 cut(s) 85, 183, 188
AoxI GGCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 82
BalI TGGCCA 1 cut(s) 156
BanI GGYRCC 1 cut(s) 16
BccI CCATC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 1 cut(s) 50
BfrI CTTAAG 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 4
BlpI GCTNAGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 122
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 96, 118, 121
BmuI ACTGGG 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 184
Bsa29I ATCGAT 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 36
Bse1I ACTGG 2 cut(s) 92, 169
BseBI CCWGG 1 cut(s) 122
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 46, 109
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 2 cut(s) 92, 169
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 150
BsnI GGCC 1 cut(s) 156
Bsp1720I GCTNAGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 108
BspDI ATCGAT 1 cut(s) 150
BspHI TCATGA 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 4
BspT107I GGYRCC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 140
BsrI ACTGG 2 cut(s) 92, 169
BssECI CCNNGG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 122
BstAFI CTTAAG 1 cut(s) 140
BstDEI CTNAG 2 cut(s) 116, 184
BstF5I GGATG 2 cut(s) 46, 109
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstXI CCANNNNNNTGG 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 150
BtsCI GGATG 2 cut(s) 46, 109
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 20, 99
BveI ACCTGC 1 cut(s) 4
CciI TCATGA 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 150
CviAII CATG 2 cut(s) 28, 158
CviJI RGCY 7 cut(s) 85, 91, 120, 139, 156, 183, 188
CviKI_1 RGCY 7 cut(s) 85, 91, 120, 139, 156, 183, 188
DdeI CTNAG 2 cut(s) 116, 184
EaeI YGGCCR 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 2 cut(s) 31, 161
FaiI YATR 2 cut(s) 29, 159
FatI CATG 2 cut(s) 27, 157
FokI GGATG 2 cut(s) 53, 96
FspBI CTAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 156
Hin1II CATG 2 cut(s) 31, 161
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 31, 101
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 67, 71
HpyCH4V TGCA 1 cut(s) 109
HpyF3I CTNAG 2 cut(s) 116, 184
Hsp92II CATG 2 cut(s) 31, 161
LpnPI CCDG 4 cut(s) 105, 107, 134, 150
LweI GCATC 3 cut(s) 96, 118, 121
MaeI CTAG 1 cut(s) 50
MboII GAAGA 2 cut(s) 16, 140
MlsI TGGCCA 1 cut(s) 156
MluNI TGGCCA 1 cut(s) 156
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 156
Mph1103I ATGCAT 1 cut(s) 111
MscI TGGCCA 1 cut(s) 156
MseI TTAA 3 cut(s) 63, 141, 179
Msp20I TGGCCA 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 122
MvaI CCWGG 1 cut(s) 122
NlaIII CATG 2 cut(s) 31, 161
NlaIV GGNNCC 1 cut(s) 18
NsiI ATGCAT 1 cut(s) 111
PagI TCATGA 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 4
PfeI GAWTC 1 cut(s) 31
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 63, 141, 179
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 122
SetI ASST 6 cut(s) 18, 51, 87, 126, 185, 190
SfaNI GCATC 3 cut(s) 96, 118, 121
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 36
TaqI TCGA 2 cut(s) 104, 150
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 63, 141, 179
Tru9I TTAA 3 cut(s) 63, 141, 179
TscAI CASTG 2 cut(s) 27, 99
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 27, 99
Vha464I CTTAAG 1 cut(s) 140
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.