Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001521.1

Orthogroup ID

OG0020395

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 261

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

aatgggaaggttatagacattactcccagtccaagtgcattgcttactttcgctctgaagaaactcaccttctccaaaaagcaactggtgccgctgttcgtgaatgccaaggcagagaatctggattatcttgtgaagttggtgaaggaaggaaagctcaagacagtgattgactcaaagtatcctctgagcaaggctgaagaagcttgggctaaaagtattgatggccatgctactgggaagatcattgtggagccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

86

Amino Acids

9.41

Weight (kDa)

9.52

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020395)

Species	Orthologous Gene IDs
malus_domestica	MD05G1168100.v1.1 MD05G1168500.v1.1
pyrus_communis	pycom05g15590 pycom05g15640
rosa_multiflora	Rmu_sc0001521.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AciI	CCGC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	77, 219
AluBI	AGCT	2 cut(s)	157, 206
AluI	AGCT	2 cut(s)	157, 206
AoxI	GGCC	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	58, 154
BalI	TGGCCA	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	88
BccI	CCATC	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	90, 255
BmrI	ACTGGG	2 cut(s)	21, 246
BmuI	ACTGGG	2 cut(s)	21, 246
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	108
Bse1I	ACTGG	3 cut(s)	27, 90, 241
Bse3DI	GCAATG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	3 cut(s)	27, 90, 241
BshFI	GGCC	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	90, 255
BspT107I	GGYRCC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	27, 90, 241
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 203
BstXI	CCANNNNNNTGG	1 cut(s)	236
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	171
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	6 cut(s)	157, 197, 206, 212, 228, 256
CviKI_1	RGCY	6 cut(s)	157, 197, 206, 212, 228, 256
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	1 cut(s)	245
DpnII	GATC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	108
Eco57I	CTGAAG	2 cut(s)	77, 219
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	233
FaiI	YATR	2 cut(s)	14, 231
FatI	CATG	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	2 cut(s)	118, 173
HphI	GGTGA	2 cut(s)	58, 154
Hpy188I	TCNGA	2 cut(s)	57, 189
Hpy188III	TCNNGA	3 cut(s)	100, 122, 160
HpyAV	CCTTC	3 cut(s)	79, 139, 143
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 203
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	4 cut(s)	40, 71, 107, 222
MalI	GATC	1 cut(s)	245
MboI	GATC	1 cut(s)	243
MboII	GAAGA	3 cut(s)	70, 212, 253
MlsI	TGGCCA	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	1 cut(s)	259
Msp20I	TGGCCA	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	88, 203
NdeII	GATC	1 cut(s)	243
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	90, 255
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspN4I	GGNNCC	2 cut(s)	90, 255
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	167
SetI	ASST	4 cut(s)	12, 71, 159, 208
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TscAI	CASTG	1 cut(s)	171
TspRI	CASTG	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.