Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0020395

Physical Location & Seq

Genomic Coordinates Reverse (-)

29858409 .. 29859628

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1168500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGTGCTGTGGTCCACTGTGCATTCCCTGTATCCAGTTTCGTTGGTCAATGAAGGAAAGCTCAAGACAGTGATCGACTCGACACATCCTCTGAGCAAGGCTGAAGACGCTTGGGCTAAGAGTATCGATAGACATGCGACTGGGAAGATTATTGTCGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

55

Amino Acids

5.97

Weight (kDa)

6.82

Isoelectric Point (pI)

18.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	14 - 52	1.2e-09	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020395)

Species	Orthologous Gene IDs
malus_domestica	MD05G1168100.v1.1 MD05G1168500.v1.1
pyrus_communis	pycom05g15590 pycom05g15640
rosa_multiflora	Rmu_sc0001521.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciVI	GTATCC	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmrI	ACTGGG	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	126
Bse1I	ACTGG	2 cut(s)	35, 145
BseCI	ATCGAT	1 cut(s)	126
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	35, 145
BshVI	ATCGAT	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	35, 145
BssMI	GATC	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	19, 70
BstDEI	CTNAG	2 cut(s)	92, 117
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	1 cut(s)	75
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	111
Bsu15I	ATCGAT	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	15, 75
Cfr13I	GGNCC	1 cut(s)	12
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	116
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	4 cut(s)	61, 101, 116, 160
CviKI_1	RGCY	4 cut(s)	61, 101, 116, 160
DdeI	CTNAG	2 cut(s)	92, 117
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	123
FaeI	CATG	1 cut(s)	137
FaiI	YATR	1 cut(s)	135
FatI	CATG	1 cut(s)	133
FokI	GGATG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	137
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	19, 70
HpyCH4V	TGCA	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	92, 117
Hsp92II	CATG	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	72
LpnPI	CCDG	3 cut(s)	41, 48, 126
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	2 cut(s)	116, 157
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	1 cut(s)	137
NspI	RCATGY	1 cut(s)	137
PctI	GAATGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	12
SchI	GAGTC	1 cut(s)	71
SetI	ASST	1 cut(s)	63
SgeI	CNNG	8 cut(s)	40, 47, 76, 91, 109, 123, 146, 153
SinI	GGWCC	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	19, 70
TaqI	TCGA	4 cut(s)	75, 80, 126, 156
Tru1I	TTAA	1 cut(s)	163
Tru9I	TTAA	1 cut(s)	163
TscAI	CASTG	2 cut(s)	22, 75
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	22, 75
VpaK11BI	GGWCC	1 cut(s)	12
XceI	RCATGY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.