Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0022299

Physical Location & Seq

Genomic Coordinates Forward (+)

32717802 .. 32718482

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1199400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCACCAAAGCACAAAAACTGGTACAATTTTGGTGATCAATCTGTCTTCCTAACCATAAAAGACCAGGTAAACTCCACATATCCACCACCTCTGCCCAGTCCACCTTCTTCTTTCCCTACCTTAGCTATTGTTCTACTAAGCCTCATGGCCTCAGCTTTCTTGCTAGTGAGCTACTATCTCATTGTTGTCAAGTTTTGCTCAAAGTGGCACCAACTCAATCTCTTGATCATGAGGTTTCCGACCACCTCACGAGCTCGACAAAATGAGGAGCTACTTACGGCCTTCTCTCCGTCAGTGTGGAACCGCGGGCTTGACGAATCAGTCATTCGTGGAATCCCAACTGTTCAGTTCAAAGGAGGAGAAGTTGATGAAGAGAGAAGTGTGTGTGGATGTGCAGTTTGTTTGAAGGATTTTCAAGAACAAGACACACTAAAAGTTCTTCCCAATTGCAGCCATGAGTTTCACTTGGACTGCATTGATGTATGGCTTCAAAGCAATGCCAACTGCCCTCTTTGCAGAACAAGTGTTCCGGGTACTATTCGTTGTCCGATCGATCATGCCATAGCACCGAGCTCTTCGCCTCAAGACTCGGAGCTGTTTTCTATCGGTAGTGATGTGGACTTTGTAGTGATTGAATTGGAGGGAGGAGATGGAGTCATAACTCATAGCACAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

227

Amino Acids

25.05

Weight (kDa)

5.15

Isoelectric Point (pI)

49.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	132 - 174	3e-12	Ring finger domain
zf-RING_11	PF17123	132 - 160	4.6e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	132 - 173	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	132 - 173	7.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	136 - 174	3.9e-10	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022299)

Species	Orthologous Gene IDs
malus_domestica	MD05G1199400.v1.1 MD10G1185600.v1.1
prunus_persica	Prupe.8G225200_v2.0.a1
pyrus_communis	pycom05g18580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
AccB1I	GGYRCC	2 cut(s)	4, 210
AccII	CGCG	1 cut(s)	309
AciI	CCGC	2 cut(s)	307, 309
AfaI	GTAC	2 cut(s)	26, 538
AgsI	TTSAA	5 cut(s)	355, 409, 419, 494, 638
AjnI	CCWGG	1 cut(s)	66
AloI	GAACNNNNNNTCC	2 cut(s)	514, 546
AluBI	AGCT	7 cut(s)	128, 158, 174, 257, 274, 576, 598
AluI	AGCT	7 cut(s)	128, 158, 174, 257, 274, 576, 598
Alw21I	GWGCWC	2 cut(s)	259, 578
AoxI	GGCC	2 cut(s)	150, 282
ApeKI	GCWGC	1 cut(s)	453
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	47
BanI	GGYRCC	2 cut(s)	4, 210
BanII	GRGCYC	2 cut(s)	259, 578
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	259, 578
BbvCI	CCTCAGC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	68
BclI	TGATCA	2 cut(s)	37, 228
BcnI	CCSGG	1 cut(s)	534
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
Bme1390I	CCNGG	2 cut(s)	68, 534
BmiI	GGNNCC	3 cut(s)	6, 212, 305
BmrFI	CCNGG	2 cut(s)	68, 534
BmrI	ACTGGG	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	40
Bpu10I	CCTNAGC	2 cut(s)	124, 154
BpuEI	CTTGAG	1 cut(s)	570
BpuMI	CCSGG	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 642, 672
Bse1I	ACTGG	2 cut(s)	26, 99
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	1 cut(s)	398
BseMI	GCAATG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	26, 99
BseRI	GAGGAG	3 cut(s)	284, 375, 663
BseXI	GCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	555
BshFI	GGCC	2 cut(s)	152, 284
BshNI	GGYRCC	2 cut(s)	4, 210
BshVI	ATCGAT	1 cut(s)	555
BsiEI	CGRYCG	1 cut(s)	555
BsiHKAI	GWGCWC	2 cut(s)	259, 578
BsiSI	CCGG	1 cut(s)	533
BsnI	GGCC	2 cut(s)	152, 284
Bsp1286I	GDGCHC	2 cut(s)	259, 578
Bsp143I	GATC	4 cut(s)	37, 228, 552, 556
BspACI	CCGC	2 cut(s)	307, 309
BspANI	GGCC	2 cut(s)	152, 284
BspCNI	CTCAG	1 cut(s)	167
BspDI	ATCGAT	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	6, 212, 305
BspQI	GCTCTTC	1 cut(s)	583
BspT107I	GGYRCC	2 cut(s)	4, 210
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	26, 99
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	4 cut(s)	37, 228, 552, 556
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	369, 583
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	124, 140, 154
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	398
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	4 cut(s)	40, 231, 555, 559
BstMBI	GATC	4 cut(s)	37, 228, 552, 556
BstMCI	CGRYCG	1 cut(s)	555
BstMWI	GCNNNNNNNGC	1 cut(s)	516
BstNI	CCWGG	1 cut(s)	68
BstSCI	CCNGG	2 cut(s)	66, 532
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	152, 284
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	311
CciI	TCATGA	1 cut(s)	231
Cfr42I	CCGCGG	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	555
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	25, 537
CviAII	CATG	4 cut(s)	148, 232, 458, 560
CviQI	GTAC	2 cut(s)	25, 537
DdeI	CTNAG	3 cut(s)	124, 140, 154
DpnI	GATC	4 cut(s)	39, 230, 554, 558
DpnII	GATC	4 cut(s)	37, 228, 552, 556
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
Eam1104I	CTCTTC	2 cut(s)	369, 583
EarI	CTCTTC	2 cut(s)	369, 583
Ecl136II	GAGCTC	2 cut(s)	257, 576
Eco24I	GRGCYC	2 cut(s)	259, 578
Eco53kI	GAGCTC	2 cut(s)	257, 576
EcoICRI	GAGCTC	2 cut(s)	257, 576
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	259, 578
FaeI	CATG	4 cut(s)	151, 235, 461, 563
FatI	CATG	4 cut(s)	147, 231, 457, 559
FauI	CCCGC	1 cut(s)	302
FbaI	TGATCA	2 cut(s)	37, 228
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	1 cut(s)	405
FriOI	GRGCYC	2 cut(s)	259, 578
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	454
HaeIII	GGCC	2 cut(s)	152, 284
HapII	CCGG	1 cut(s)	533
Hin1II	CATG	4 cut(s)	151, 235, 461, 563
HinfI	GANTC	4 cut(s)	320, 336, 590, 657
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	73, 104, 622
Hpy188I	TCNGA	3 cut(s)	243, 552, 595
Hpy188III	TCNNGA	5 cut(s)	226, 232, 252, 419, 587
Hpy8I	GTNNAC	3 cut(s)	73, 104, 622
HpyAV	CCTTC	3 cut(s)	117, 295, 403
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	4 cut(s)	398, 453, 477, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	516
HpyF3I	CTNAG	3 cut(s)	124, 140, 154
Hsp92II	CATG	4 cut(s)	151, 235, 461, 563
Ksp22I	TGATCA	2 cut(s)	37, 228
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	37, 228, 552, 556
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	271, 595
LpnPI	CCDG	5 cut(s)	7, 53, 80, 112, 546
Lsp1109I	GCAGC	1 cut(s)	465
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	167
MalI	GATC	4 cut(s)	39, 230, 554, 558
MboI	GATC	4 cut(s)	37, 228, 552, 556
MboII	GAAGA	5 cut(s)	40, 102, 386, 434, 570
MfeI	CAATTG	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	259, 578
MluCI	AATT	3 cut(s)	28, 448, 638
MlyI	GAGTC	2 cut(s)	584, 666
MmeI	TCCRAC	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	68, 534
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	516
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	4 cut(s)	37, 228, 552, 556
NlaIII	CATG	4 cut(s)	151, 235, 461, 563
NlaIV	GGNNCC	3 cut(s)	6, 212, 305
PagI	TCATGA	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	583
PfeI	GAWTC	2 cut(s)	320, 336
PkrI	GCNGC	1 cut(s)	455
Ple19I	CGATCG	1 cut(s)	555
PleI	GAGTC	2 cut(s)	584, 665
PpsI	GAGTC	2 cut(s)	584, 665
Psp124BI	GAGCTC	2 cut(s)	259, 578
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	3 cut(s)	6, 212, 305
PvuI	CGATCG	1 cut(s)	555
RsaI	GTAC	2 cut(s)	26, 538
RsaNI	GTAC	2 cut(s)	25, 537
SacI	GAGCTC	2 cut(s)	259, 578
SacII	CCGCGG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	583
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	4 cut(s)	37, 228, 552, 556
SchI	GAGTC	2 cut(s)	584, 666
ScrFI	CCNGG	2 cut(s)	68, 534
SduI	GDGCHC	2 cut(s)	259, 578
SexAI	ACCWGGT	1 cut(s)	66
Sfr303I	CCGCGG	1 cut(s)	310
SgrBI	CCGCGG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	585
SmoI	CTYRAG	1 cut(s)	585
Sse9I	AATT	3 cut(s)	28, 448, 638
SsiI	CCGC	2 cut(s)	307, 309
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	2 cut(s)	259, 578
StyD4I	CCNGG	2 cut(s)	66, 532
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	259, 555
TasI	AATT	3 cut(s)	28, 448, 638
TfiI	GAWTC	2 cut(s)	320, 336
TscAI	CASTG	1 cut(s)	303
TseI	GCWGC	1 cut(s)	453
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	1 cut(s)	303
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.