Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0022299

Physical Location & Seq

Genomic Coordinates Forward (+)

20261958 .. 20263167

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTTCAGCCGCATACAGACCATTTGAATATGGCTCCAAAGCAGAAACACTTGTACAAATTTGATCAAGCTCTCCCACCCATCAAAAACCAGGTAAACTCAAACTATCAGCCACCCCTGCCTAGCCCAGACTCTTCTTTTCCTATATTAGCTATTGTTGTACTAAGCATCATGGCTACAGCTTTCTTGCTAGTGAGCTACTATGTTATTGTTGTCAAATTTTGCTCAAACTGGTACCAAATTGATCTGCTGTCAAGGTTTCCCATCTTTCGAGCTCGAGAAACGGAGGATCTTCTTACAGCCTTCTCTCCATCAATTTGGAACCGGGGGCTTGACGAATCAGTCATTCGCGGAATCCCAACTGTTCAATTCAAAGGAGGAGAAGTTGAAGATAGAAGTGTTTGTGGATGTGCAGTTTGTTTGAAAGAGTTTCAGGAGCAAGATACACTAAAAGTTCTTCCCAACTGCAGCCATGAGTTTCACTTAGACTGCATTGATATATGGCTTCAAAGCAATGCAAACTGCCCTCTTTGCAGAACAAGCATTTCAGGTACTATCCGGTATCCAACTGATCATGTCATAGCACCAAGCACTTCACCTCAAGACTCTGAGTTGTTTTCTCATAGCTTCATGGGTAGTGAAGAAGACTTTGTAGTAATTGAGTTGGGGGGAGAAGATGGTGTCATTTTCCACCAAGGCAGCAACAAAGAAATGATTATAGAAAGTCATAGAACAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

247

Amino Acids

27.74

Weight (kDa)

5.19

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022299)

Species	Orthologous Gene IDs
malus_domestica	MD05G1199400.v1.1 MD10G1185600.v1.1
prunus_persica	Prupe.8G225200_v2.0.a1
pyrus_communis	pycom05g18580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc65I	GGTACC	1 cut(s)	234
AccB1I	GGYRCC	1 cut(s)	234
AccII	CGCG	1 cut(s)	351
AciI	CCGC	2 cut(s)	11, 351
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	59, 218
AfaI	GTAC	4 cut(s)	56, 162, 236, 553
AgsI	TTSAA	6 cut(s)	28, 368, 373, 389, 424, 509
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	6 cut(s)	71, 152, 182, 198, 275, 627
AluI	AGCT	6 cut(s)	71, 152, 182, 198, 275, 627
Alw21I	GWGCWC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	297
Ama87I	CYCGRG	1 cut(s)	276
ApeKI	GCWGC	2 cut(s)	468, 699
ApoI	RAATTY	2 cut(s)	59, 218
Asp718I	GGTACC	1 cut(s)	234
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	588
AvaI	CYCGRG	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	2 cut(s)	480, 711
BccI	CCATC	4 cut(s)	89, 272, 319, 671
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	573
BclI	TGATCA	2 cut(s)	64, 571
BcnI	CCSGG	1 cut(s)	326
BfaI	CTAG	3 cut(s)	123, 191, 739
BfmI	CTRYAG	2 cut(s)	177, 466
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	3 cut(s)	11, 469, 700
BlsI	GCNGC	3 cut(s)	12, 470, 701
Bme1390I	CCNGG	2 cut(s)	92, 326
BmeT110I	CYCGRG	1 cut(s)	276
BmiI	GGNNCC	3 cut(s)	36, 236, 323
BmrFI	CCNGG	2 cut(s)	92, 326
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	325, 694
BsaWI	WCCGGW	1 cut(s)	558
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	325, 694
BseGI	GGATG	1 cut(s)	413
BseMI	GCAATG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	480, 711
BsgI	GTGCAG	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	351
BshNI	GGYRCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	325, 559
BsoBI	CYCGRG	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	54
Bsp143I	GATC	4 cut(s)	64, 244, 289, 571
BspACI	CCGC	2 cut(s)	11, 351
BspCNI	CTCAG	1 cut(s)	601
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	36, 236, 323
BspMAI	CTGCAG	1 cut(s)	470
BspPI	GGATC	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	325, 694
BssMI	GATC	4 cut(s)	64, 244, 289, 571
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	139
BstAUI	TGTACA	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	164, 484, 609
BstF5I	GGATG	1 cut(s)	413
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	4 cut(s)	67, 247, 292, 574
BstMBI	GATC	4 cut(s)	64, 244, 289, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 531, 540
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	90, 324
BstSFI	CTRYAG	2 cut(s)	177, 466
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	480, 711
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	413
CsiI	ACCWGGT	1 cut(s)	90
Csp6I	GTAC	4 cut(s)	55, 161, 235, 552
CviAII	CATG	4 cut(s)	172, 473, 575, 631
CviQI	GTAC	4 cut(s)	55, 161, 235, 552
DdeI	CTNAG	3 cut(s)	164, 484, 609
DpnI	GATC	4 cut(s)	66, 246, 291, 573
DpnII	GATC	4 cut(s)	64, 244, 289, 571
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	694
Eco24I	GRGCYC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	4 cut(s)	175, 476, 578, 634
FatI	CATG	4 cut(s)	171, 472, 574, 630
FbaI	TGATCA	2 cut(s)	64, 571
Fnu4HI	GCNGC	3 cut(s)	11, 469, 700
FokI	GGATG	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	11, 469, 700
FspBI	CTAG	3 cut(s)	123, 191, 739
GluI	GCNGC	3 cut(s)	11, 469, 700
HapII	CCGG	2 cut(s)	325, 559
Hin1II	CATG	4 cut(s)	175, 476, 578, 634
HinfI	GANTC	4 cut(s)	131, 338, 354, 605
HpaII	CCGG	2 cut(s)	325, 559
HphI	GGTGA	1 cut(s)	588
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	610
Hpy188III	TCNNGA	3 cut(s)	278, 434, 602
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	413, 468, 492, 518, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 531, 540
HpyF3I	CTNAG	3 cut(s)	164, 484, 609
Hsp92II	CATG	4 cut(s)	175, 476, 578, 634
KpnI	GGTACC	1 cut(s)	238
Ksp22I	TGATCA	2 cut(s)	64, 571
Kzo9I	GATC	4 cut(s)	64, 244, 289, 571
LmnI	GCTCC	2 cut(s)	40, 436
LpnPI	CCDG	9 cut(s)	77, 104, 131, 141, 217, 338, 419, 534, 572
Lsp1109I	GCAGC	2 cut(s)	480, 711
LweI	GCATC	1 cut(s)	177
MabI	ACCWGGT	1 cut(s)	90
MaeI	CTAG	3 cut(s)	123, 191, 739
MalI	GATC	4 cut(s)	66, 246, 291, 573
MboI	GATC	4 cut(s)	64, 244, 289, 571
MboII	GAAGA	7 cut(s)	126, 284, 401, 449, 653, 656, 686
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	6 cut(s)	59, 218, 240, 315, 368, 657
MlyI	GAGTC	2 cut(s)	125, 599
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	4 cut(s)	280, 371, 537, 609
MspI	CCGG	2 cut(s)	325, 559
MspR9I	CCNGG	2 cut(s)	92, 326
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	118, 531, 540
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	4 cut(s)	64, 244, 289, 571
NlaIII	CATG	4 cut(s)	175, 476, 578, 634
NlaIV	GGNNCC	3 cut(s)	36, 236, 323
PaeR7I	CTCGAG	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	338, 354
PkrI	GCNGC	3 cut(s)	12, 470, 701
PleI	GAGTC	2 cut(s)	125, 599
PpsI	GAGTC	2 cut(s)	125, 599
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	36, 236, 323
PstI	CTGCAG	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	4 cut(s)	56, 162, 236, 553
RsaNI	GTAC	4 cut(s)	55, 161, 235, 552
SacI	GAGCTC	1 cut(s)	277
SatI	GCNGC	3 cut(s)	11, 469, 700
Sau3AI	GATC	4 cut(s)	64, 244, 289, 571
SchI	GAGTC	2 cut(s)	125, 599
ScrFI	CCNGG	2 cut(s)	92, 326
SduI	GDGCHC	1 cut(s)	277
SexAI	ACCWGGT	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	2 cut(s)	177, 466
Sfr274I	CTCGAG	1 cut(s)	276
SlaI	CTCGAG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	276, 600
SmoI	CTYRAG	2 cut(s)	276, 600
Sse9I	AATT	6 cut(s)	59, 218, 240, 315, 368, 657
SsiI	CCGC	2 cut(s)	11, 351
SspMI	CTAG	3 cut(s)	123, 191, 739
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	90, 324
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	2 cut(s)	271, 277
TasI	AATT	6 cut(s)	59, 218, 240, 315, 368, 657
TatI	WGTACW	2 cut(s)	54, 160
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	338, 354
TseI	GCWGC	2 cut(s)	468, 699
TspDTI	ATGAA	1 cut(s)	619
TspGWI	ACGGA	1 cut(s)	299
XapI	RAATTY	2 cut(s)	59, 218
XhoI	CTCGAG	1 cut(s)	276
XspI	CTAG	3 cut(s)	123, 191, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.