Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0022354

Physical Location & Seq

Genomic Coordinates Reverse (-)

35750603 .. 35751276

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1224900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTTATTTGTCACTGCATCTTGGATTTTGTGTTTTCAGGGCTTGAAGATAAGAAATTGAAGGGTCAACTTGCTGTTAGAGAAGAATTGTATGGAAAATCTGCACAAGCTGCTGCCAAGGCTGAGAAGAATTATCAGTGGCTTCTACCAAGTGAGGGAGGCTATTTGGAGACTGAAGGCATAGAGAAGACATGGAGGATCAAACAAGAATCAATTGCTCTGCACCTATCAATGCCGCCAAATGGTAATAATGCTTCCCTCTCTTCTTTCTGCCTCTCTATGTGTATATATTTATCATTTTCTAGATGGAATAATCCATTGATCATCCAAGTGGCTATTCGATTTTGCATCTTCTCTTTCCCAATTGAAGTGGTTATTCAATCCATACTAGCTAGATACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

135

Amino Acids

15.24

Weight (kDa)

7.61

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022354)

Species	Orthologous Gene IDs
malus_domestica	MD05G1224900.v1.1 MD09G1267900.v1.1
pyrus_communis	pycom02g20610 pycom14g20070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	155, 242
AgsI	TTSAA	4 cut(s)	47, 61, 368, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	2 cut(s)	110, 392
AluI	AGCT	2 cut(s)	110, 392
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	110, 113
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	97, 100
BccI	CCATC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	3 cut(s)	303, 389, 393
BisI	GCNGC	3 cut(s)	111, 114, 236
BlsI	GCNGC	3 cut(s)	112, 115, 237
BmsI	GCATC	2 cut(s)	27, 357
BpiI	GAAGAC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 242
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	155, 242
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	97, 100
BsgI	GTGCAG	2 cut(s)	87, 206
BslI	CCNNNNNNNGG	2 cut(s)	155, 242
BsmAI	GTCTC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	198, 321
BspACI	CCGC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	115
BspPI	GGATC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	2 cut(s)	198, 321
BssT1I	CCWWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	2 cut(s)	201, 324
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	198, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 119
BstV1I	GCAGC	2 cut(s)	97, 100
BstV2I	GAAGAC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	13, 143
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	7 cut(s)	43, 110, 122, 142, 162, 335, 392
CviKI_1	RGCY	7 cut(s)	43, 110, 122, 142, 162, 335, 392
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	200, 323
DpnII	GATC	2 cut(s)	198, 321
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	1 cut(s)	195
FaiI	YATR	7 cut(s)	93, 182, 193, 281, 287, 289, 386
FatI	CATG	1 cut(s)	191
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	111, 114, 236
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	3 cut(s)	111, 114, 236
FspBI	CTAG	3 cut(s)	303, 389, 393
GluI	GCNGC	3 cut(s)	111, 114, 236
Hin1II	CATG	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	55, 170
HpyCH4V	TGCA	4 cut(s)	18, 104, 223, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 119
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	195
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	2 cut(s)	198, 321
LpnPI	CCDG	1 cut(s)	24
Lsp1109I	GCAGC	2 cut(s)	97, 100
LweI	GCATC	2 cut(s)	27, 357
MaeI	CTAG	3 cut(s)	303, 389, 393
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	2 cut(s)	200, 323
MboI	GATC	2 cut(s)	198, 321
MboII	GAAGA	6 cut(s)	59, 95, 139, 199, 255, 343
MfeI	CAATTG	2 cut(s)	213, 363
MluCI	AATT	5 cut(s)	56, 86, 130, 213, 363
MnlI	CCTC	5 cut(s)	148, 152, 189, 269, 284
MslI	CAYNNNNRTG	1 cut(s)	329
MunI	CAATTG	2 cut(s)	213, 363
MwoI	GCNNNNNNNGC	2 cut(s)	110, 119
NdeII	GATC	2 cut(s)	198, 321
NlaIII	CATG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	112, 115, 237
RseI	CAYNNNNRTG	1 cut(s)	329
SatI	GCNGC	3 cut(s)	111, 114, 236
Sau3AI	GATC	2 cut(s)	198, 321
SetI	ASST	3 cut(s)	112, 228, 394
SfaNI	GCATC	2 cut(s)	27, 357
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	5 cut(s)	56, 86, 130, 213, 363
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	3 cut(s)	303, 389, 393
StyI	CCWWGG	1 cut(s)	117
TaqI	TCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	56, 86, 130, 213, 363
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	209
TscAI	CASTG	2 cut(s)	20, 143
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	110, 113
Tsp45I	GTSAC	1 cut(s)	11
TspRI	CASTG	2 cut(s)	20, 143
XbaI	TCTAGA	1 cut(s)	302
XspI	CTAG	3 cut(s)	303, 389, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.