maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1224900.v1.1 MD09G1267900.v1.1 |
| pyrus_communis | pycom02g20610 pycom14g20070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 209 |
| AcuI | CTGAAG | 1 cut(s) | 198 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 158 |
| AflIII | ACRYGT | 1 cut(s) | 14 |
| AgsI | TTSAA | 2 cut(s) | 49, 64 |
| AluBI | AGCT | 1 cut(s) | 113 |
| AluI | AGCT | 1 cut(s) | 113 |
| Alw26I | GTCTC | 1 cut(s) | 167 |
| AlwI | GGATC | 1 cut(s) | 209 |
| ApeKI | GCWGC | 2 cut(s) | 113, 116 |
| BbsI | GAAGAC | 1 cut(s) | 197 |
| BbvI | GCAGC | 2 cut(s) | 100, 103 |
| BcoDI | GTCTC | 1 cut(s) | 167 |
| BisI | GCNGC | 2 cut(s) | 114, 117 |
| BlsI | GCNGC | 2 cut(s) | 115, 118 |
| BpiI | GAAGAC | 1 cut(s) | 197 |
| BsaJI | CCNNGG | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseDI | CCNNGG | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseXI | GCAGC | 2 cut(s) | 100, 103 |
| BsgI | GTGCAG | 1 cut(s) | 90 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 158 |
| BsmAI | GTCTC | 1 cut(s) | 167 |
| Bsp143I | GATC | 1 cut(s) | 201 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspPI | GGATC | 1 cut(s) | 209 |
| BssECI | CCNNGG | 1 cut(s) | 120 |
| BssMI | GATC | 1 cut(s) | 201 |
| BssT1I | CCWWGG | 1 cut(s) | 120 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 113 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstKTI | GATC | 1 cut(s) | 204 |
| BstMAI | GTCTC | 1 cut(s) | 167 |
| BstMBI | GATC | 1 cut(s) | 201 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 122 |
| BstNSI | RCATGY | 1 cut(s) | 18 |
| BstV1I | GCAGC | 2 cut(s) | 100, 103 |
| BstV2I | GAAGAC | 1 cut(s) | 197 |
| BtsIMutI | CAGTG | 1 cut(s) | 146 |
| CviAII | CATG | 3 cut(s) | 15, 32, 195 |
| CviJI | RGCY | 5 cut(s) | 45, 113, 125, 145, 165 |
| CviKI_1 | RGCY | 5 cut(s) | 45, 113, 125, 145, 165 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| DpnI | GATC | 1 cut(s) | 203 |
| DpnII | GATC | 1 cut(s) | 201 |
| Eco130I | CCWWGG | 1 cut(s) | 120 |
| Eco57I | CTGAAG | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 1 cut(s) | 120 |
| ErhI | CCWWGG | 1 cut(s) | 120 |
| FaeI | CATG | 3 cut(s) | 18, 35, 198 |
| FaiI | YATR | 5 cut(s) | 16, 33, 96, 185, 196 |
| FatI | CATG | 3 cut(s) | 14, 31, 194 |
| Fnu4HI | GCNGC | 2 cut(s) | 114, 117 |
| Fsp4HI | GCNGC | 2 cut(s) | 114, 117 |
| GluI | GCNGC | 2 cut(s) | 114, 117 |
| Hin1II | CATG | 3 cut(s) | 18, 35, 198 |
| HincII | GTYRAC | 1 cut(s) | 71 |
| HindII | GTYRAC | 1 cut(s) | 71 |
| Hpy166II | GTNNAC | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 1 cut(s) | 26 |
| Hpy8I | GTNNAC | 1 cut(s) | 71 |
| HpyAV | CCTTC | 2 cut(s) | 58, 173 |
| HpyCH4V | TGCA | 2 cut(s) | 31, 107 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 122 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| Hsp92II | CATG | 3 cut(s) | 18, 35, 198 |
| Kzo9I | GATC | 1 cut(s) | 201 |
| Lsp1109I | GCAGC | 2 cut(s) | 100, 103 |
| MaeIII | GTNAC | 1 cut(s) | 10 |
| MalI | GATC | 1 cut(s) | 203 |
| MboI | GATC | 1 cut(s) | 201 |
| MboII | GAAGA | 3 cut(s) | 98, 142, 202 |
| MluCI | AATT | 3 cut(s) | 59, 89, 133 |
| MmeI | TCCRAC | 1 cut(s) | 4 |
| MnlI | CCTC | 3 cut(s) | 151, 155, 192 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 122 |
| NdeII | GATC | 1 cut(s) | 201 |
| NlaIII | CATG | 3 cut(s) | 18, 35, 198 |
| NspI | RCATGY | 1 cut(s) | 18 |
| PciI | ACATGT | 1 cut(s) | 14 |
| PkrI | GCNGC | 2 cut(s) | 115, 118 |
| PscI | ACATGT | 1 cut(s) | 14 |
| SatI | GCNGC | 2 cut(s) | 114, 117 |
| Sau3AI | GATC | 1 cut(s) | 201 |
| SetI | ASST | 1 cut(s) | 115 |
| SgeI | CNNG | 8 cut(s) | 27, 44, 58, 86, 122, 133, 165, 207 |
| Sse9I | AATT | 3 cut(s) | 59, 89, 133 |
| StyI | CCWWGG | 1 cut(s) | 120 |
| TasI | AATT | 3 cut(s) | 59, 89, 133 |
| TscAI | CASTG | 1 cut(s) | 146 |
| TseI | GCWGC | 2 cut(s) | 113, 116 |
| TspRI | CASTG | 1 cut(s) | 146 |
| XceI | RCATGY | 1 cut(s) | 18 |