maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1224900.v1.1 MD09G1267900.v1.1 |
| pyrus_communis | pycom02g20610 pycom14g20070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 115, 247 |
| AflIII | ACRYGT | 1 cut(s) | 256 |
| AgsI | TTSAA | 4 cut(s) | 121, 130, 145, 233 |
| AluBI | AGCT | 2 cut(s) | 194, 214 |
| AluI | AGCT | 2 cut(s) | 194, 214 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 41 |
| ApeKI | GCWGC | 2 cut(s) | 194, 197 |
| ApoI | RAATTY | 2 cut(s) | 115, 247 |
| BbvI | GCAGC | 2 cut(s) | 181, 184 |
| BccI | CCATC | 2 cut(s) | 11, 280 |
| BisI | GCNGC | 2 cut(s) | 195, 198 |
| BlsI | GCNGC | 2 cut(s) | 196, 199 |
| BmsI | GCATC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 1 cut(s) | 201 |
| Bse1I | ACTGG | 1 cut(s) | 242 |
| Bse3DI | GCAATG | 1 cut(s) | 51 |
| BseDI | CCNNGG | 1 cut(s) | 201 |
| BseMI | GCAATG | 1 cut(s) | 51 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseNI | ACTGG | 1 cut(s) | 242 |
| BseRI | GAGGAG | 1 cut(s) | 117 |
| BseXI | GCAGC | 2 cut(s) | 181, 184 |
| BsgI | GTGCAG | 1 cut(s) | 171 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BsrDI | GCAATG | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 242 |
| BssECI | CCNNGG | 1 cut(s) | 201 |
| BssT1I | CCWWGG | 1 cut(s) | 201 |
| Bst4CI | ACNGT | 1 cut(s) | 37 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 2 cut(s) | 98, 207 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 194, 203 |
| BstNSI | RCATGY | 2 cut(s) | 222, 260 |
| BstV1I | GCAGC | 2 cut(s) | 181, 184 |
| BtsIMutI | CAGTG | 1 cut(s) | 42 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CaiI | CAGNNNCTG | 1 cut(s) | 41 |
| CviAII | CATG | 2 cut(s) | 219, 257 |
| CviJI | RGCY | 5 cut(s) | 126, 194, 206, 214, 297 |
| CviKI_1 | RGCY | 5 cut(s) | 126, 194, 206, 214, 297 |
| DdeI | CTNAG | 2 cut(s) | 98, 207 |
| Eco130I | CCWWGG | 1 cut(s) | 201 |
| EcoT14I | CCWWGG | 1 cut(s) | 201 |
| ErhI | CCWWGG | 1 cut(s) | 201 |
| FaeI | CATG | 2 cut(s) | 222, 260 |
| FaiI | YATR | 4 cut(s) | 177, 220, 258, 291 |
| FatI | CATG | 2 cut(s) | 218, 256 |
| Fnu4HI | GCNGC | 2 cut(s) | 195, 198 |
| Fsp4HI | GCNGC | 2 cut(s) | 195, 198 |
| GluI | GCNGC | 2 cut(s) | 195, 198 |
| Hin1II | CATG | 2 cut(s) | 222, 260 |
| HincII | GTYRAC | 1 cut(s) | 152 |
| HindII | GTYRAC | 1 cut(s) | 152 |
| Hpy166II | GTNNAC | 1 cut(s) | 152 |
| Hpy188I | TCNGA | 3 cut(s) | 67, 267, 277 |
| Hpy8I | GTNNAC | 1 cut(s) | 152 |
| HpyAV | CCTTC | 2 cut(s) | 115, 139 |
| HpyCH4III | ACNGT | 1 cut(s) | 37 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 188, 307 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 194, 203 |
| HpyF3I | CTNAG | 2 cut(s) | 98, 207 |
| Hsp92II | CATG | 2 cut(s) | 222, 260 |
| LmnI | GCTCC | 1 cut(s) | 104 |
| LpnPI | CCDG | 2 cut(s) | 54, 223 |
| Lsp1109I | GCAGC | 2 cut(s) | 181, 184 |
| LweI | GCATC | 1 cut(s) | 258 |
| MboII | GAAGA | 3 cut(s) | 70, 100, 179 |
| MluCI | AATT | 4 cut(s) | 115, 140, 170, 247 |
| MnlI | CCTC | 1 cut(s) | 95 |
| MseI | TTAA | 1 cut(s) | 162 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 194, 203 |
| NlaIII | CATG | 2 cut(s) | 222, 260 |
| NspI | RCATGY | 2 cut(s) | 222, 260 |
| PciI | ACATGT | 1 cut(s) | 256 |
| PkrI | GCNGC | 2 cut(s) | 196, 199 |
| PscI | ACATGT | 1 cut(s) | 256 |
| PstNI | CAGNNNCTG | 1 cut(s) | 41 |
| SaqAI | TTAA | 1 cut(s) | 162 |
| SatI | GCNGC | 2 cut(s) | 195, 198 |
| SetI | ASST | 3 cut(s) | 196, 216, 265 |
| SfaNI | GCATC | 1 cut(s) | 258 |
| Sse9I | AATT | 4 cut(s) | 115, 140, 170, 247 |
| StyI | CCWWGG | 1 cut(s) | 201 |
| TaaI | ACNGT | 1 cut(s) | 37 |
| TasI | AATT | 4 cut(s) | 115, 140, 170, 247 |
| Tru1I | TTAA | 1 cut(s) | 162 |
| Tru9I | TTAA | 1 cut(s) | 162 |
| TscAI | CASTG | 1 cut(s) | 42 |
| TseI | GCWGC | 2 cut(s) | 194, 197 |
| TspDTI | ATGAA | 1 cut(s) | 62 |
| TspRI | CASTG | 1 cut(s) | 42 |
| XapI | RAATTY | 2 cut(s) | 115, 247 |
| XceI | RCATGY | 2 cut(s) | 222, 260 |