Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0022428

Physical Location & Seq

Genomic Coordinates Reverse (-)

36612651 .. 36614392

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1233400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGTGCAGAGAAAGAGTAGTAGGCTTCAATCTGTTAAGGAGCAGGAGAAATTGGAGACGGATCCGATTGAATTGAGAAGGAAGCAGTTGATTCTTGATATACGGGAGGCAAACAGAATAGGTGATCAAAATGAAGAGAAGCGCAGGATTCGGTTGATTCACGAAACGGAGATGGTGAACAAACTAAGCAAAGCAAGGAAACTTCGAGATTTACAAGTACAGTTGATATCGCTCGGTTATACATTCAACCCGGAAGATGGACTATTAGTTTGTCACTACTTAAGGGAAAAGTGTTTGGACGGTGATCTTTTGTTTCACTCCATTGAAGACGCTGATGTTTACGCAAAGCATCCTCAGAACCTCATAGACAAATACAAAGCTGTTGGTGCTAGAAATGTTTGGTATTTCTTCACCCGTACCCGCCCGAATGAAACTCAACCTGGTACCAGTACAAGTACAGAGCAGGTTCTGGCCGGAAAATGGATATTTGGCAACGAAATGGACGTGCTTCATCAGGGCGAGAAAGTCGGTGTAAAACAATTACTAGAGTATTGTGACGGGGATGCCAAGACCCAATATAAGATCATCGAGTACAAACTCGATCCTCTTCCAGATAATTTGAAGAGCGGTCCTTGGTTCGTCTGTAAGCTGTACAATGATGCAAGTTGCGTGGAGGTGCAGAGTTTAATTAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

233

Amino Acids

26.91

Weight (kDa)

6.96

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	79 - 200	3.3e-19	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022428)

Species	Orthologous Gene IDs
malus_domestica	MD05G1233100.v1.1 MD05G1233300.v1.1 MD05G1233400.v1.1
pyrus_communis	pycom05g21100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
Acc65I	GGTACC	1 cut(s)	443
AccB1I	GGYRCC	1 cut(s)	443
AccBSI	CCGCTC	1 cut(s)	627
AciI	CCGC	2 cut(s)	421, 627
AclWI	GGATC	3 cut(s)	56, 69, 596
AcoI	YGGCCR	1 cut(s)	471
AfaI	GTAC	7 cut(s)	219, 418, 445, 451, 457, 593, 653
AfiI	CCNNNNNNNGG	2 cut(s)	257, 480
AflII	CTTAAG	1 cut(s)	280
AgsI	TTSAA	5 cut(s)	29, 71, 247, 326, 622
AjiI	CACGTC	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	2 cut(s)	380, 649
AluI	AGCT	2 cut(s)	380, 649
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	56, 69, 596
AlwNI	CAGNNNCTG	1 cut(s)	469
AoxI	GGCC	1 cut(s)	471
ArsI	GACNNNNNNTTYG	2 cut(s)	252, 284
AseI	ATTAAT	1 cut(s)	690
Asp718I	GGTACC	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	629
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	4 cut(s)	134, 187, 314, 403
AvaII	GGWCC	1 cut(s)	629
BamHI	GGATCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	333
BccI	CCATC	2 cut(s)	166, 251
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	390, 545
BfrI	CTTAAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	251, 441
Bme18I	GGWCC	1 cut(s)	629
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	2 cut(s)	63, 445
BmrFI	CCNGG	2 cut(s)	251, 441
BmsI	GCATC	3 cut(s)	358, 553, 649
BpiI	GAAGAC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 480
Bse1I	ACTGG	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	632
BseGI	GGATG	2 cut(s)	349, 568
BseLI	CCNNNNNNNGG	2 cut(s)	257, 480
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	447
BsgI	GTGCAG	2 cut(s)	26, 698
BshFI	GGCC	1 cut(s)	473
BshNI	GGYRCC	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	251, 474
BslI	CCNNNNNNNGG	2 cut(s)	257, 480
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	5 cut(s)	61, 124, 304, 582, 601
BspACI	CCGC	2 cut(s)	421, 627
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	63, 445
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	3 cut(s)	56, 69, 596
BspQI	GCTCTTC	1 cut(s)	617
BspT107I	GGYRCC	1 cut(s)	443
BspTI	CTTAAG	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	627
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	1 cut(s)	447
BssECI	CCNNGG	1 cut(s)	632
BssMI	GATC	5 cut(s)	61, 124, 304, 582, 601
BssT1I	CCWWGG	1 cut(s)	632
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	222, 302
Bst6I	CTCTTC	3 cut(s)	129, 612, 617
BstAFI	CTTAAG	1 cut(s)	280
BstAUI	TGTACA	1 cut(s)	651
BstDEI	CTNAG	2 cut(s)	185, 354
BstF5I	GGATG	2 cut(s)	349, 568
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	5 cut(s)	64, 127, 307, 585, 604
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	5 cut(s)	61, 124, 304, 582, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	249, 439
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	473
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	349, 568
BveI	ACCTGC	1 cut(s)	454
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	629
CseI	GACGC	1 cut(s)	338
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	7 cut(s)	218, 417, 444, 450, 456, 592, 652
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviJI	RGCY	5 cut(s)	25, 380, 473, 649, 696
CviKI_1	RGCY	5 cut(s)	25, 380, 473, 649, 696
CviQI	GTAC	7 cut(s)	218, 417, 444, 450, 456, 592, 652
DdeI	CTNAG	2 cut(s)	185, 354
DpnI	GATC	5 cut(s)	63, 126, 306, 584, 603
DpnII	GATC	5 cut(s)	61, 124, 304, 582, 601
EaeI	YGGCCR	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	129, 612, 617
EarI	CTCTTC	3 cut(s)	129, 612, 617
Eco130I	CCWWGG	1 cut(s)	632
Eco32I	GATATC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	439
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	50
FaiI	YATR	4 cut(s)	101, 240, 365, 579
FauI	CCCGC	1 cut(s)	428
FbaI	TGATCA	1 cut(s)	124
FokI	GGATG	2 cut(s)	336, 575
FspBI	CTAG	2 cut(s)	390, 545
GlaI	GCGC	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	2 cut(s)	251, 474
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	91, 148, 157
HpaII	CCGG	2 cut(s)	251, 474
HphI	GGTGA	4 cut(s)	134, 187, 314, 403
Hpy166II	GTNNAC	2 cut(s)	178, 340
Hpy188I	TCNGA	2 cut(s)	66, 357
Hpy188III	TCNNGA	4 cut(s)	95, 161, 206, 611
Hpy8I	GTNNAC	2 cut(s)	178, 340
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	2 cut(s)	222, 302
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	3 cut(s)	7, 662, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	2 cut(s)	185, 354
HpySE526I	ACGT	1 cut(s)	504
HspAI	GCGC	1 cut(s)	142
KpnI	GGTACC	1 cut(s)	447
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	61, 124, 304, 582, 601
LguI	GCTCTTC	1 cut(s)	617
LmnI	GCTCC	1 cut(s)	40
LweI	GCATC	3 cut(s)	358, 553, 649
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	2 cut(s)	390, 545
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	272, 554
MalI	GATC	5 cut(s)	63, 126, 306, 584, 603
MbiI	CCGCTC	1 cut(s)	627
MboI	GATC	5 cut(s)	61, 124, 304, 582, 601
MboII	GAAGA	6 cut(s)	146, 266, 338, 400, 599, 634
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	5 cut(s)	50, 71, 539, 616, 687
MnlI	CCTC	5 cut(s)	100, 363, 371, 615, 667
MseI	TTAA	4 cut(s)	36, 281, 686, 690
MspCI	CTTAAG	1 cut(s)	280
MspI	CCGG	2 cut(s)	251, 474
MspR9I	CCNGG	2 cut(s)	251, 441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	5 cut(s)	61, 124, 304, 582, 601
NlaIV	GGNNCC	2 cut(s)	63, 445
NmuCI	GTSAC	2 cut(s)	272, 554
PacI	TTAATTAA	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	91, 148, 157
PshBI	ATTAAT	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	63, 445
PspPI	GGNCC	1 cut(s)	629
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	7 cut(s)	219, 418, 445, 451, 457, 593, 653
RsaNI	GTAC	7 cut(s)	218, 417, 444, 450, 456, 592, 652
SapI	GCTCTTC	1 cut(s)	617
SaqAI	TTAA	4 cut(s)	36, 281, 686, 690
Sau3AI	GATC	5 cut(s)	61, 124, 304, 582, 601
Sau96I	GGNCC	1 cut(s)	629
ScrFI	CCNGG	2 cut(s)	251, 441
SetI	ASST	8 cut(s)	124, 363, 382, 442, 468, 507, 651, 678
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	3 cut(s)	358, 553, 649
SinI	GGWCC	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	5 cut(s)	50, 71, 539, 616, 687
SsiI	CCGC	2 cut(s)	421, 627
SspMI	CTAG	2 cut(s)	390, 545
StyD4I	CCNGG	2 cut(s)	249, 439
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	2 cut(s)	222, 302
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	205, 588, 600
TasI	AATT	5 cut(s)	50, 71, 539, 616, 687
TatI	WGTACW	5 cut(s)	217, 449, 455, 591, 651
TfiI	GAWTC	3 cut(s)	91, 148, 157
Tru1I	TTAA	4 cut(s)	36, 281, 686, 690
Tru9I	TTAA	4 cut(s)	36, 281, 686, 690
TseFI	GTSAC	2 cut(s)	272, 554
Tsp45I	GTSAC	2 cut(s)	272, 554
TspDTI	ATGAA	3 cut(s)	147, 444, 500
TspGWI	ACGGA	2 cut(s)	74, 182
Vha464I	CTTAAG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	629
VspI	ATTAAT	1 cut(s)	690
XspI	CTAG	2 cut(s)	390, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.