MD05G1260100.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0018512
Physical Location & Seq
Forward (+)
39543369 .. 39547320
3952 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1260100.v1.1.491

Sequence Viewer

Length: 507 bp
ATGGCGCCAAGGGTTGGGAACCTGCCAACCGGAGGGGCTATAGAGCGGCGTTCAAGCGAGAGCAAGTGGCTGCTGCCGATGAGATCGATCCCGACGATTCCGCATGACAATCCTGAGCTCGAGCAAGAGGCTGATGTTAAGTGGAAGAAAATAGTGGAGGTCTACTCAAAGCAGGGGAAGCTGAAGAATTGGTTGGCTGTGTGTGATGTCGACACCACCTTGTCGGCGGGTTTGGCTTTAGGGCTTTTTTTGCCTCAATTGAGTGATGAGTCGTGGAAAGGAAAGGTGGTCGCCTACAACAAAAACCCCCGGCTGCATTCGATACAAGGCAAGGATCTTAATTCGAGGGCCAAATTTATGCAGACTTTGATCAAAAGCCAGGACTGGACGGCTGATTTCGGGAAGGTGTTCGATGTGATTCTAAAACCAACGTTCTCACACTCTAACCCCTGTACTAATTCAAAACCGACTATGATACATCATCCTCACTTTAGGCCTTTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

169

Amino Acids

18.96

Weight (kDa)

9.52

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 71 - 143 1.6e-10 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 14
AccBSI CCGCTC 1 cut(s) 46
AccI GTMKAC 2 cut(s) 162, 210
AciI CCGC 3 cut(s) 46, 101, 227
AclI AACGTT 1 cut(s) 431
AclWI GGATC 2 cut(s) 82, 342
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 14, 32
AgsI TTSAA 2 cut(s) 54, 462
AjnI CCWGG 1 cut(s) 378
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 118, 181
AluI AGCT 2 cut(s) 118, 181
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 2 cut(s) 82, 342
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 2 cut(s) 348, 494
ApeKI GCWGC 3 cut(s) 70, 73, 313
ApoI RAATTY 1 cut(s) 353
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 57, 60, 300
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 1 cut(s) 380
BclI TGATCA 1 cut(s) 369
BcnI CCSGG 1 cut(s) 310
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 4 cut(s) 47, 71, 74, 314
BlsI GCNGC 4 cut(s) 48, 72, 75, 315
Bme1390I CCNGG 2 cut(s) 310, 380
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 2 cut(s) 6, 20
BmrFI CCNGG 2 cut(s) 310, 380
BplI GAGNNNNNCTC 2 cut(s) 149, 181
Bpu10I CCTNAGC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 310
Bsa29I ATCGAT 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 8, 308
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 32
Bse1I ACTGG 1 cut(s) 389
BseBI CCWGG 1 cut(s) 380
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 8, 308
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 2 cut(s) 14, 32
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 57, 60, 300
BshFI GGCC 2 cut(s) 350, 496
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 30, 310
BslI CCNNNNNNNGG 2 cut(s) 14, 32
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 350, 496
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 83, 87, 334, 369
BspACI CCGC 3 cut(s) 46, 101, 227
BspANI GGCC 2 cut(s) 350, 496
BspCNI CTCAG 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 6, 20
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 2 cut(s) 82, 342
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 8, 308
BssMI GATC 4 cut(s) 83, 87, 334, 369
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 4 cut(s) 86, 90, 337, 372
BstMBI GATC 4 cut(s) 83, 87, 334, 369
BstMWI GCNNNNNNNGC 3 cut(s) 178, 233, 250
BstNI CCWGG 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 308, 378
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 57, 60, 300
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu15I ATCGAT 1 cut(s) 86
BsuRI GGCC 2 cut(s) 350, 496
BsuTUI ATCGAT 1 cut(s) 86
BtsCI GGATG 1 cut(s) 481
BveI ACCTGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 348
ClaI ATCGAT 1 cut(s) 86
Csp6I GTAC 1 cut(s) 453
CviAII CATG 1 cut(s) 104
CviQI GTAC 1 cut(s) 453
DdeI CTNAG 1 cut(s) 114
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 85, 89, 336, 371
DpnII GATC 4 cut(s) 83, 87, 334, 369
DraI TTTAAA 1 cut(s) 501
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 8
Eco147I AGGCCT 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 8
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 1 cut(s) 107
FaiI YATR 4 cut(s) 41, 105, 359, 473
FatI CATG 1 cut(s) 103
FauI CCCGC 1 cut(s) 220
FbaI TGATCA 1 cut(s) 369
FblI GTMKAC 2 cut(s) 162, 210
Fnu4HI GCNGC 4 cut(s) 47, 71, 74, 314
FokI GGATG 1 cut(s) 468
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 47, 71, 74, 314
GlaI GCGC 1 cut(s) 6
GluI GCNGC 4 cut(s) 47, 71, 74, 314
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 350, 496
HapII CCGG 2 cut(s) 30, 310
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 3 cut(s) 97, 269, 418
HpaII CCGG 2 cut(s) 30, 310
Hpy166II GTNNAC 2 cut(s) 163, 211
Hpy188III TCNNGA 3 cut(s) 91, 113, 400
Hpy8I GTNNAC 2 cut(s) 163, 211
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 2 cut(s) 316, 361
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 233, 250
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 431
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 4 cut(s) 83, 87, 334, 369
LpnPI CCDG 9 cut(s) 35, 43, 126, 158, 323, 365, 370, 392, 463
Lsp1109I GCAGC 3 cut(s) 57, 60, 300
MaeII ACGT 1 cut(s) 431
MalI GATC 4 cut(s) 85, 89, 336, 371
MbiI CCGCTC 1 cut(s) 46
MboI GATC 4 cut(s) 83, 87, 334, 369
MboII GAAGA 2 cut(s) 157, 196
MfeI CAATTG 1 cut(s) 257
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 6 cut(s) 187, 257, 340, 353, 457, 502
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 6 cut(s) 26, 121, 151, 264, 339, 495
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 4 cut(s) 138, 339, 500, 505
MspI CCGG 2 cut(s) 30, 310
MspR9I CCNGG 2 cut(s) 310, 380
MunI CAATTG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 178, 233, 250
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 310
NdeII GATC 4 cut(s) 83, 87, 334, 369
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 6, 20
PaeR7I CTCGAG 1 cut(s) 119
PceI AGGCCT 1 cut(s) 496
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 97, 418
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 4 cut(s) 48, 72, 75, 315
PleI GAGTC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 120
Psp1406I AACGTT 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 378
PspGI CCWGG 1 cut(s) 378
PspN4I GGNNCC 2 cut(s) 6, 20
PspPI GGNCC 1 cut(s) 348
PspXI VCTCGAGB 1 cut(s) 119
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SacI GAGCTC 1 cut(s) 120
SalI GTCGAC 1 cut(s) 209
SaqAI TTAA 4 cut(s) 138, 339, 500, 505
SatI GCNGC 4 cut(s) 47, 71, 74, 314
Sau3AI GATC 4 cut(s) 83, 87, 334, 369
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 310, 380
SduI GDGCHC 1 cut(s) 120
SetI ASST 8 cut(s) 24, 120, 162, 183, 221, 288, 408, 434
SfcI CTRYAG 1 cut(s) 39
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 6 cut(s) 187, 257, 340, 353, 457, 502
SseBI AGGCCT 1 cut(s) 496
SsiI CCGC 3 cut(s) 46, 101, 227
SspDI GGCGCC 1 cut(s) 4
SstI GAGCTC 1 cut(s) 120
StuI AGGCCT 1 cut(s) 496
StyD4I CCNGG 2 cut(s) 308, 378
StyI CCWWGG 1 cut(s) 8
TaiI ACGT 1 cut(s) 434
TaqI TCGA 6 cut(s) 86, 120, 210, 320, 344, 411
TasI AATT 6 cut(s) 187, 257, 340, 353, 457, 502
TatI WGTACW 1 cut(s) 452
TauI GCSGC 1 cut(s) 49
TfiI GAWTC 2 cut(s) 97, 418
Tru1I TTAA 4 cut(s) 138, 339, 500, 505
Tru9I TTAA 4 cut(s) 138, 339, 500, 505
TseI GCWGC 3 cut(s) 70, 73, 313
Van91I CCANNNNNTGG 1 cut(s) 14
XapI RAATTY 1 cut(s) 353
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 2 cut(s) 162, 210
XmnI GAANNNNTTC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.