MD05G1268600.v1.1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
40402133 .. 40403710
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1268600.v1.1.491

Sequence Viewer

Length: 1578 bp
ATGCCTCACCTTCTAACATTTGCAGTAGTTTCTCTCTTCTTCTCAGTTTCTTCTGCAAGATATAACCTCATCCATGAATTGAATTTTGATAGTTGCTTTAGCTTCCATTCGAAAGAATCTTCAACCAACGTAAGCACATTTTTGCTCGATACTCATTCCCCTTCATTTTCATCCGTCTTTGAGTCCTCCATCCAAAACCTCAGATTCAACAGCACGAATCAGAAGCTTCTATACATCATCACACCGTATCTATACGAACACGTGCAAGCTGCCATCATTTGTAGTAAAATACATCGTCTGCAGGTTAGGATTCGAAGCGGGGGTCACGACTATGAGGCCCTCTCTTACAAGGCAGATGTACCCTTCATCATCATCGATCTCGTCAAGCTTAATAAGGTTAAAGTCAACAGAGGAAAACGCACTGCATGGGTTCAATCCGGTGCAACACTTGGTGAGCTTTACTACCATGTTGCCAACGAGAGTAGAGGCAAACTTGGTTTCACAGCCGGTGTTTGCCCTACTATTGGTGTTGGTGGACATATCAGCGGCGGAGGGCAGGGCGTATTGATGAGGAAATTTGGGCTTTCAAGTGACAATGCTGTGGATGCAATCGTGGTCACAGCAGACGGAGCTGTTGTTGACAGACAATCGATGGGGGAGGACTTATTTTGGGCCATTAGAGGAGGTGGAGCTGCAAGCTTTGGAGTTGTACTTGAATGGAAGATCAAGTTGGCTCCGGTCCCCCCGAAGGTCACGGTTTTCACAATCCCCAGAACCCTAGAACAAAAGGCAACCAAATTGGTTCACAAGTGGCAAGCCATTGCTCCCAAGTTTCATAAAGATCTGTTCATAAGAGTCATTCTTTTTGTGGGAAAAGGTTCACAAGGTGGGAAAACAATCCAGGCCAATTTCAATGCCTTGTTTCTTGGCACCACTGATCAACTAGTCCCCTTGATGCAAAAGAGCTTTCCTGAGTTGGGTTTGAAACCTGAGGACTGCAAGGAAATAAGCTGGATTCAATCTATTTTCTACATCAATGGTGAGGATCCCGGACAGCCATTAGAGCTTTTGTTGGACAGAAACCATGTCCAAAAGGGCTTCTTCAAAGCCAAAAGTGATTTTGTGACAAAACCTATCTCAGAAAAGCACTTAGAAGCCATATGGAAGGTGATGCAAGATGGTGACGTTCCTGGTATAATGATTTGGGATCCGTATGGTGGACAAATGGCTGAGATTCCAGAAGATTTTACTCCGTTTCCACATAGAGCTGGAGTCTTGTACAACATTCAGTACTTCACTAAGTGGTTTGAGGGGGGAGCTTTGGCTGAGAAGAAGCATTTGGAGGGGATCAATAGGGTTTACAATTTCATGGCTCCATTTGTGACTAAAAACCCTAGGGCTGCATATATTAACTACAGGGATTTGGACATTGGAAGAAATATCAAGGGAACTTTGGAGGAAGCTAAGGTTTGGGGTGAAAAGTATTTCAAACGAAATTTTGAGCGATTAGCTAAGATAAAGGGTGAGGTTGATTACGAAAATTTCTTCAAAAGCGAGCAAAATTTTGTACCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

526

Amino Acids

59.04

Weight (kDa)

9.06

Isoelectric Point (pI)

27.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 78 - 214 1.5e-21 FAD binding domain
BBE PF08031 468 - 521 2.4e-16 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021118)

Species Orthologous Gene IDs
malus_domestica MD05G1268600.v1.1 MD10G1247200.v1.1
prunus_persica Prupe.4G096200_v2.0.a1
rosa_rugosa Rorug05G0036800 Rorug05G0037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 929
AciI CCGC 3 cut(s) 318, 546, 549
AclWI GGATC 5 cut(s) 1040, 1053, 1202, 1215, 1355
AcsI RAATTY 5 cut(s) 82, 575, 1495, 1540, 1561
AcvI CACGTG 1 cut(s) 262
AdeI CACNNNGTG 3 cut(s) 452, 887, 1302
AfaI GTAC 5 cut(s) 360, 711, 1280, 1292, 1569
AfiI CCNNNNNNNGG 4 cut(s) 524, 748, 977, 1217
AflIII ACRYGT 1 cut(s) 259
AhlI ACTAGT 1 cut(s) 943
AjnI CCWGG 2 cut(s) 900, 1189
AjuI GAANNNNNNNTTGG 4 cut(s) 713, 745, 1322, 1354
AlwI GGATC 5 cut(s) 1040, 1053, 1202, 1215, 1355
AoxI GGCC 3 cut(s) 336, 672, 903
ApeKI GCWGC 3 cut(s) 269, 692, 1400
ApoI RAATTY 5 cut(s) 82, 575, 1495, 1540, 1561
ArsI GACNNNNNNTTYG 2 cut(s) 307, 339
Asp700I GAANNNNTTC 1 cut(s) 877
AspA2I CCTAGG 1 cut(s) 1394
AspS9I GGNCC 3 cut(s) 337, 672, 739
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 6 cut(s) 464, 1052, 1180, 1193, 1487, 1535
AsuII TTCGAA 2 cut(s) 110, 313
AvaII GGWCC 1 cut(s) 739
AvrII CCTAGG 1 cut(s) 1394
AxyI CCTNAGG 1 cut(s) 990
BamHI GGATCC 2 cut(s) 1045, 1207
BanI GGYRCC 1 cut(s) 929
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbrPI CACGTG 1 cut(s) 262
BbvI GCAGC 3 cut(s) 256, 679, 1387
BccI CCATC 4 cut(s) 197, 281, 646, 1172
BciT130I CCWGG 2 cut(s) 902, 1191
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 1 cut(s) 1050
BcuI ACTAGT 1 cut(s) 943
BfaI CTAG 3 cut(s) 779, 944, 1395
BfmI CTRYAG 2 cut(s) 299, 1414
BfuAI ACCTGC 1 cut(s) 292
BglII AGATCT 1 cut(s) 841
BisI GCNGC 4 cut(s) 270, 547, 693, 1401
BlnI CCTAGG 1 cut(s) 1394
BlsI GCNGC 4 cut(s) 271, 548, 694, 1402
BmcAI AGTACT 1 cut(s) 1292
Bme1390I CCNGG 3 cut(s) 902, 1050, 1191
Bme18I GGWCC 1 cut(s) 739
BmgT120I GGNCC 3 cut(s) 337, 672, 739
BmiI GGNNCC 6 cut(s) 735, 741, 931, 1047, 1209, 1374
BmrFI CCNGG 3 cut(s) 902, 1050, 1191
BmsI GCATC 3 cut(s) 595, 945, 1161
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 1290
Bpu10I CCTNAGC 1 cut(s) 1464
Bpu14I TTCGAA 2 cut(s) 110, 313
BpuMI CCSGG 1 cut(s) 1050
Bsa29I ATCGAT 2 cut(s) 375, 650
BsaAI YACGTR 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 1394
BsaWI WCCGGW 2 cut(s) 437, 736
BsaXI ACNNNNNCTCC 2 cut(s) 621, 651
Bsc4I CCNNNNNNNGG 4 cut(s) 524, 748, 977, 1217
Bse118I RCCGGY 1 cut(s) 506
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 819
BseBI CCWGG 2 cut(s) 902, 1191
BseCI ATCGAT 2 cut(s) 375, 650
BseDI CCNNGG 1 cut(s) 1394
BseGI GGATG 4 cut(s) 69, 170, 189, 610
BseLI CCNNNNNNNGG 4 cut(s) 524, 748, 977, 1217
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 7 cut(s) 57, 214, 963, 981, 1152, 1221, 1317
BseRI GAGGAG 1 cut(s) 696
BseXI GCAGC 3 cut(s) 256, 679, 1387
BshFI GGCC 3 cut(s) 338, 674, 905
BshNI GGYRCC 1 cut(s) 929
BshVI ATCGAT 2 cut(s) 375, 650
BsiSI CCGG 4 cut(s) 438, 507, 737, 1050
BslFI GGGAC 2 cut(s) 725, 932
BslI CCNNNNNNNGG 4 cut(s) 524, 748, 977, 1217
BsmFI GGGAC 2 cut(s) 725, 932
BsnI GGCC 3 cut(s) 338, 674, 905
Bsp119I TTCGAA 2 cut(s) 110, 313
Bsp1407I TGTACA 1 cut(s) 1278
Bsp143I GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
BspACI CCGC 3 cut(s) 318, 546, 549
BspANI GGCC 3 cut(s) 338, 674, 905
BspCNI CTCAG 7 cut(s) 56, 213, 964, 982, 1151, 1222, 1318
BspDI ATCGAT 2 cut(s) 375, 650
BspLI GGNNCC 6 cut(s) 735, 741, 931, 1047, 1209, 1374
BspMAI CTGCAG 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 5 cut(s) 1040, 1053, 1202, 1215, 1355
BspT104I TTCGAA 2 cut(s) 110, 313
BspT107I GGYRCC 1 cut(s) 929
BsrDI GCAATG 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 1278
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 1394
BssMI GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
BssT1I CCWWGG 1 cut(s) 1394
Bst2UI CCWGG 2 cut(s) 902, 1191
Bst4CI ACNGT 2 cut(s) 246, 757
Bst6I CTCTTC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 1278
BstBAI YACGTR 1 cut(s) 262
BstBI TTCGAA 2 cut(s) 110, 313
BstC8I GCNNGC 4 cut(s) 267, 697, 816, 1556
BstF5I GGATG 4 cut(s) 69, 170, 189, 610
BstKTI GATC 7 cut(s) 379, 726, 844, 940, 1048, 1210, 1350
BstMBI GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
BstMWI GCNNNNNNNGC 3 cut(s) 605, 629, 1063
BstNI CCWGG 2 cut(s) 902, 1191
BstSCI CCNGG 3 cut(s) 900, 1048, 1189
BstSFI CTRYAG 2 cut(s) 299, 1414
BstV1I GCAGC 3 cut(s) 256, 679, 1387
BstX2I RGATCY 3 cut(s) 841, 1045, 1207
BstYI RGATCY 3 cut(s) 841, 1045, 1207
Bsu15I ATCGAT 2 cut(s) 375, 650
Bsu36I CCTNAGG 1 cut(s) 990
BsuRI GGCC 3 cut(s) 338, 674, 905
BsuTUI ATCGAT 2 cut(s) 375, 650
BtsCI GGATG 4 cut(s) 69, 170, 189, 610
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 2 cut(s) 420, 933
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 267, 697, 816, 1556
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 3 cut(s) 337, 672, 739
ClaI ATCGAT 2 cut(s) 375, 650
Csp6I GTAC 5 cut(s) 359, 710, 1279, 1291, 1568
CviAII CATG 5 cut(s) 74, 426, 467, 1085, 1369
CviQI GTAC 5 cut(s) 359, 710, 1279, 1291, 1568
DpnI GATC 7 cut(s) 378, 725, 843, 939, 1047, 1209, 1349
DpnII GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
DraIII CACNNNGTG 3 cut(s) 452, 887, 1302
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 1394
Eco47I GGWCC 1 cut(s) 739
Eco72I CACGTG 1 cut(s) 262
Eco81I CCTNAGG 1 cut(s) 990
EcoO109I RGGNCCY 1 cut(s) 337
EcoRII CCWGG 2 cut(s) 900, 1189
EcoT14I CCWWGG 1 cut(s) 1394
ErhI CCWWGG 1 cut(s) 1394
FaeI CATG 5 cut(s) 77, 429, 470, 1088, 1372
FalI AAGNNNNNCTT 2 cut(s) 1085, 1117
FaqI GGGAC 2 cut(s) 725, 932
FatI CATG 5 cut(s) 73, 425, 466, 1084, 1368
FauI CCCGC 1 cut(s) 311
FauNDI CATATG 1 cut(s) 1160
FbaI TGATCA 1 cut(s) 937
Fnu4HI GCNGC 4 cut(s) 270, 547, 693, 1401
FokI GGATG 4 cut(s) 56, 157, 176, 617
Fsp4HI GCNGC 4 cut(s) 270, 547, 693, 1401
FspBI CTAG 3 cut(s) 779, 944, 1395
GluI GCNGC 4 cut(s) 270, 547, 693, 1401
GsuI CTGGAG 1 cut(s) 1290
HaeIII GGCC 3 cut(s) 338, 674, 905
HapII CCGG 4 cut(s) 438, 507, 737, 1050
Hin1II CATG 5 cut(s) 77, 429, 470, 1088, 1372
HincII GTYRAC 2 cut(s) 406, 640
HindII GTYRAC 2 cut(s) 406, 640
HindIII AAGCTT 3 cut(s) 224, 386, 697
HinfI GANTC 9 cut(s) 116, 182, 204, 217, 310, 855, 1015, 1234, 1272
HpaII CCGG 4 cut(s) 438, 507, 737, 1050
HphI GGTGA 6 cut(s) 464, 1052, 1180, 1193, 1487, 1535
Hpy166II GTNNAC 7 cut(s) 406, 536, 640, 805, 881, 1220, 1360
Hpy188I TCNGA 3 cut(s) 203, 222, 1141
Hpy188III TCNNGA 3 cut(s) 326, 971, 1238
Hpy8I GTNNAC 7 cut(s) 406, 536, 640, 805, 881, 1220, 1360
HpyAV CCTTC 5 cut(s) 20, 171, 373, 742, 1159
HpyCH4III ACNGT 2 cut(s) 246, 757
HpyCH4IV ACGT 3 cut(s) 129, 261, 1185
HpyF10VI GCNNNNNNNGC 3 cut(s) 605, 629, 1063
HpySE526I ACGT 3 cut(s) 129, 261, 1185
Hsp92II CATG 5 cut(s) 77, 429, 470, 1088, 1372
Ksp22I TGATCA 1 cut(s) 937
Kzo9I GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
LmnI GCTCC 6 cut(s) 629, 689, 739, 829, 1316, 1378
Lsp1109I GCAGC 3 cut(s) 256, 679, 1387
LweI GCATC 3 cut(s) 595, 945, 1161
MaeI CTAG 3 cut(s) 779, 944, 1395
MaeII ACGT 3 cut(s) 129, 261, 1185
MaeIII GTNAC 7 cut(s) 323, 590, 616, 751, 1123, 1181, 1381
MalI GATC 7 cut(s) 378, 725, 843, 939, 1047, 1209, 1349
MboI GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
MflI RGATCY 3 cut(s) 841, 1045, 1207
MlyI GAGTC 3 cut(s) 191, 864, 1281
MmeI TCCRAC 1 cut(s) 1053
MroXI GAANNNNTTC 1 cut(s) 877
MseI TTAA 4 cut(s) 390, 399, 1410, 1576
MslI CAYNNNNRTG 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 546
MspI CCGG 4 cut(s) 438, 507, 737, 1050
MspR9I CCNGG 3 cut(s) 902, 1050, 1191
MvaI CCWGG 2 cut(s) 902, 1191
MwoI GCNNNNNNNGC 3 cut(s) 605, 629, 1063
NciI CCSGG 1 cut(s) 1050
NdeI CATATG 1 cut(s) 1160
NdeII GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
NlaIII CATG 5 cut(s) 77, 429, 470, 1088, 1372
NlaIV GGNNCC 6 cut(s) 735, 741, 931, 1047, 1209, 1374
NmuCI GTSAC 7 cut(s) 323, 590, 616, 751, 1123, 1181, 1381
NspV TTCGAA 2 cut(s) 110, 313
PdmI GAANNNNTTC 1 cut(s) 877
PfeI GAWTC 6 cut(s) 116, 204, 217, 310, 1015, 1234
PfoI TCCNGGA 1 cut(s) 1048
PkrI GCNGC 4 cut(s) 271, 548, 694, 1402
PleI GAGTC 3 cut(s) 190, 863, 1280
PmaCI CACGTG 1 cut(s) 262
PmlI CACGTG 1 cut(s) 262
PpsI GAGTC 3 cut(s) 190, 863, 1280
Ppu21I YACGTR 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 900, 1189
PspCI CACGTG 1 cut(s) 262
PspGI CCWGG 2 cut(s) 900, 1189
PspN4I GGNNCC 6 cut(s) 735, 741, 931, 1047, 1209, 1374
PspPI GGNCC 3 cut(s) 337, 672, 739
PstI CTGCAG 1 cut(s) 303
PsuI RGATCY 3 cut(s) 841, 1045, 1207
RsaI GTAC 5 cut(s) 360, 711, 1280, 1292, 1569
RsaNI GTAC 5 cut(s) 359, 710, 1279, 1291, 1568
RseI CAYNNNNRTG 1 cut(s) 330
SaqAI TTAA 4 cut(s) 390, 399, 1410, 1576
SatI GCNGC 4 cut(s) 270, 547, 693, 1401
Sau3AI GATC 7 cut(s) 376, 723, 841, 937, 1045, 1207, 1347
Sau96I GGNCC 3 cut(s) 337, 672, 739
ScaI AGTACT 1 cut(s) 1292
SchI GAGTC 3 cut(s) 191, 864, 1281
ScrFI CCNGG 3 cut(s) 902, 1050, 1191
SfaNI GCATC 3 cut(s) 595, 945, 1161
SfcI CTRYAG 2 cut(s) 299, 1414
SfuI TTCGAA 2 cut(s) 110, 313
SinI GGWCC 1 cut(s) 739
SmiMI CAYNNNNRTG 1 cut(s) 330
SpeI ACTAGT 1 cut(s) 943
SsiI CCGC 3 cut(s) 318, 546, 549
SspMI CTAG 3 cut(s) 779, 944, 1395
StyD4I CCNGG 3 cut(s) 900, 1048, 1189
StyI CCWWGG 1 cut(s) 1394
TaaI ACNGT 2 cut(s) 246, 757
TaiI ACGT 3 cut(s) 132, 264, 1188
TaqI TCGA 5 cut(s) 110, 147, 313, 375, 650
TatI WGTACW 3 cut(s) 709, 1278, 1290
TauI GCSGC 1 cut(s) 549
TfiI GAWTC 6 cut(s) 116, 204, 217, 310, 1015, 1234
Tru1I TTAA 4 cut(s) 390, 399, 1410, 1576
Tru9I TTAA 4 cut(s) 390, 399, 1410, 1576
TscAI CASTG 2 cut(s) 427, 940
TseFI GTSAC 7 cut(s) 323, 590, 616, 751, 1123, 1181, 1381
TseI GCWGC 3 cut(s) 269, 692, 1400
Tsp45I GTSAC 7 cut(s) 323, 590, 616, 751, 1123, 1181, 1381
TspDTI ATGAA 7 cut(s) 90, 153, 159, 355, 824, 838, 1357
TspGWI ACGGA 4 cut(s) 163, 642, 1200, 1242
TspRI CASTG 2 cut(s) 427, 940
VpaK11BI GGWCC 1 cut(s) 739
XapI RAATTY 5 cut(s) 82, 575, 1495, 1540, 1561
XmaJI CCTAGG 1 cut(s) 1394
XmnI GAANNNNTTC 1 cut(s) 877
XspI CTAG 3 cut(s) 779, 944, 1395
ZrmI AGTACT 1 cut(s) 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.