Prupe.4G096200_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0021118
Physical Location & Seq
Reverse (-)
4833057 .. 4834666
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G096200.1

Sequence Viewer

Length: 1557 bp
ATGGAAGCAATTGGAGTGGAAGCAAAAATGGCTCACCTTCTAACCTATGCAATAGTTTCTCTCTTCTTCTCAGTTTCCTCTGCAGTAGTTGACCTCGTCCCTGAACACAACTTTGTTACTTGCGTTGCCAACCAGTCTCCACAATACTCAGCCACCATAAGCAAATTGGTGTACAGCCCTCATTCCCCTTCATTTTCATTTATTTTTCAGTCCTCTATACAAAACTTCAGGTTCAACAGCACCAAATTTCATAAGCTTCAATACATCATTACACCGTATAGCGCTGATCACGTCAAAGCTGCAATCATTTGTAGCAAAGTACATGGCCTGCAAGTCAGGATTCGAAGCGGTGGTCACGACTATGAGGGGCTCTCATATAATTCATATGTCCCCTTTATCATCATTGATCTTGTCAACCTTAATAATGTGAGAGTTGACAGCAACAATGGCACTGCATGGGTTCAAGCTGGTGCCACAGTTGGTGAGCTTTACTATCATGTTGCCAATCAGAGCAAAGGCCATGGCTTCCCAGCTGGTGTTTGCCCTAGTATGGGGGCTGGGGGGCATATCAGTGGTGGTGGACAAGGCACATTGATGAGAAAATTTGGCCTTGCTGCTGATAATGTTGTAGATGCAATTGTGATTACTGCTGATGGAAATATTCTTGACAGGCAAGGAATGGGTGAGGATTTCTTTTGGGCCATTAGAGGAGGTGGAGGAGGAAACTTTGGAGTTGTAGTTGAATGGAAGATCAATTTGGTTCCAGTTCCTCCTAAGGTGACAGTTTTCAACATCCCAAGAACCCTTGAACAAAATGCAACCAAATTGATTCACAGGTGGCAACAGATTGCTCACAAGTTTCATGAAGATCTATTCATAAGAATCATTATATTTGTAGGCAAGGATTCTAAGGGTGGAAAAACAATCCAGGCCAATTTCAATTCATTGTTTCTTGGAACCAGTGATCAACTAGTCCCACTGATGGCAAAAAGCTTTCCTGAGTTGGGCTTGAAGCCTGAGGACTGCAAGGAAATAAGTTGGATCCAGTCCACTATTTACAGTAATGGTGAAAACCCAGGACAGCCCTTGGAGGTTTTGTTAGACAGAAACCATGTTCAAAAAGGCTTCTTCAAAGGCAAATCAGATTTTGTGACTGAACCCATTTCAGAAACAAACTTAGAAGCCATATGGAAGGTAATGCAAGAAGGTGAGGCTGGTGTTATGGTTTGGGATCCTTACGGTGGAAAAATGTGTGAGATTTCAGAATCTTCAATTCCATTTCCACATAGGGCTGGAGTTTTACACAACATACAATACTTCAGCAAATGGCAAGAGGGGGGATATTTGGCTGAGCAGAGGCATTTGAAGACTGCATATGTCAACTACAGGGATTTGGACATTGGGAGAAATATCCATGGAATATTTTCTGAAGCCAAGATTTGGGGTGAAAAGTACTTCAAGGGAAATTTTGATCAATTGGCTCATATAAAGGGTATGGTTGATTATGGAAACTTCTTCAAGAATGAGCAAAGTATTGCACCAAACTTTTATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

519

Amino Acids

57.56

Weight (kDa)

6.83

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021118)

Species Orthologous Gene IDs
malus_domestica MD05G1268600.v1.1 MD10G1247200.v1.1
prunus_persica Prupe.4G096200_v2.0.a1
rosa_rugosa Rorug05G0036800 Rorug05G0037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 1440
AciI CCGC 1 cut(s) 348
AclWI GGATC 4 cut(s) 1036, 1049, 1226, 1239
AcsI RAATTY 3 cut(s) 245, 602, 1465
AcuI CTGAAG 3 cut(s) 211, 1303, 1449
AfaI GTAC 3 cut(s) 173, 321, 1454
AfeI AGCGCT 1 cut(s) 283
AfiI CCNNNNNNNGG 6 cut(s) 550, 551, 982, 1004, 1241, 1440
AhlI ACTAGT 1 cut(s) 970
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 927, 1075
AjuI GAANNNNNNNTTGG 2 cut(s) 740, 772
AluBI AGCT 6 cut(s) 256, 299, 467, 487, 533, 993
AluI AGCT 6 cut(s) 256, 299, 467, 487, 533, 993
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 4 cut(s) 1036, 1049, 1226, 1239
Aor51HI AGCGCT 1 cut(s) 283
AoxI GGCC 5 cut(s) 325, 517, 607, 699, 930
ApeKI GCWGC 2 cut(s) 299, 614
ApoI RAATTY 3 cut(s) 245, 602, 1465
ArsI GACNNNNNNTTYG 2 cut(s) 337, 369
Asp700I GAANNNNTTC 1 cut(s) 1423
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 699
AsuHPI GGTGA 7 cut(s) 26, 494, 695, 790, 1079, 1220, 1457
AsuII TTCGAA 1 cut(s) 343
AxyI CCTNAGG 2 cut(s) 774, 1017
BamHI GGATCC 2 cut(s) 1041, 1231
BanI GGYRCC 1 cut(s) 470
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 1373
BbvI GCAGC 2 cut(s) 286, 601
BccI CCATC 2 cut(s) 647, 976
BciT130I CCWGG 2 cut(s) 929, 1077
BclI TGATCA 3 cut(s) 286, 964, 1471
BcoDI GTCTC 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 970
BfaI CTAG 2 cut(s) 546, 971
BfmI CTRYAG 2 cut(s) 81, 1384
BfoI RGCGCY 1 cut(s) 285
BglII AGATCT 1 cut(s) 868
BisI GCNGC 2 cut(s) 300, 615
BlpI GCTNAGC 1 cut(s) 1350
BlsI GCNGC 2 cut(s) 301, 616
BmcAI AGTACT 1 cut(s) 1454
Bme1390I CCNGG 2 cut(s) 929, 1077
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 699
BmiI GGNNCC 5 cut(s) 472, 762, 958, 1043, 1233
BmrFI CCNGG 2 cut(s) 929, 1077
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 1373
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 1314
Bpu1102I GCTNAGC 1 cut(s) 1350
Bpu14I TTCGAA 1 cut(s) 343
BsaJI CCNNGG 4 cut(s) 520, 1075, 1086, 1414
BsaXI ACNNNNNCTCC 4 cut(s) 723, 753, 1082, 1112
Bsc4I CCNNNNNNNGG 6 cut(s) 550, 551, 982, 1004, 1241, 1440
Bse1I ACTGG 4 cut(s) 133, 764, 960, 1045
Bse21I CCTNAGG 2 cut(s) 774, 1017
BseBI CCWGG 2 cut(s) 929, 1077
BseDI CCNNGG 4 cut(s) 520, 1075, 1086, 1414
BseGI GGATG 1 cut(s) 792
BseLI CCNNNNNNNGG 6 cut(s) 550, 551, 982, 1004, 1241, 1440
BseMII CTCAG 5 cut(s) 84, 162, 990, 1008, 1341
BseNI ACTGG 4 cut(s) 133, 764, 960, 1045
BseRI GAGGAG 2 cut(s) 723, 732
BseXI GCAGC 2 cut(s) 286, 601
BseYI CCCAGC 2 cut(s) 529, 557
BshFI GGCC 5 cut(s) 327, 519, 609, 701, 932
BshNI GGYRCC 1 cut(s) 470
BslFI GGGAC 3 cut(s) 83, 374, 959
BslI CCNNNNNNNGG 6 cut(s) 550, 551, 982, 1004, 1241, 1440
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 3 cut(s) 83, 374, 959
BsnI GGCC 5 cut(s) 327, 519, 609, 701, 932
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 372
Bsp1407I TGTACA 1 cut(s) 171
Bsp143I GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
Bsp1720I GCTNAGC 1 cut(s) 1350
Bsp19I CCATGG 2 cut(s) 520, 1414
BspACI CCGC 1 cut(s) 348
BspANI GGCC 5 cut(s) 327, 519, 609, 701, 932
BspCNI CTCAG 5 cut(s) 83, 161, 991, 1009, 1342
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 5 cut(s) 472, 762, 958, 1043, 1233
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 4 cut(s) 1036, 1049, 1226, 1239
BspT104I TTCGAA 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 470
BsrGI TGTACA 1 cut(s) 171
BsrI ACTGG 4 cut(s) 133, 764, 960, 1045
BssECI CCNNGG 4 cut(s) 520, 1075, 1086, 1414
BssMI GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
BssT1I CCWWGG 3 cut(s) 520, 1086, 1414
Bst2UI CCWGG 2 cut(s) 929, 1077
Bst4CI ACNGT 5 cut(s) 276, 478, 784, 1061, 1241
Bst6I CTCTTC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 171
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 8 cut(s) 70, 148, 774, 909, 999, 1017, 1177, 1350
BstDSI CCRYGG 2 cut(s) 520, 1414
BstF5I GGATG 1 cut(s) 792
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 8 cut(s) 289, 409, 753, 871, 967, 1044, 1234, 1474
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
BstMWI GCNNNNNNNGC 2 cut(s) 29, 447
BstNI CCWGG 2 cut(s) 929, 1077
BstSCI CCNGG 2 cut(s) 927, 1075
BstSFI CTRYAG 2 cut(s) 81, 1384
BstV1I GCAGC 2 cut(s) 286, 601
BstV2I GAAGAC 1 cut(s) 1373
BstX2I RGATCY 3 cut(s) 868, 1041, 1231
BstYI RGATCY 3 cut(s) 868, 1041, 1231
Bsu36I CCTNAGG 2 cut(s) 774, 1017
BsuRI GGCC 5 cut(s) 327, 519, 609, 701, 932
BtgI CCRYGG 2 cut(s) 520, 1414
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 792
BtsI GCAGTG 1 cut(s) 450
BtsIMutI CAGTG 4 cut(s) 450, 577, 967, 977
Cac8I GCNNGC 1 cut(s) 329
CciI TCATGA 1 cut(s) 862
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 699
Csp6I GTAC 3 cut(s) 172, 320, 1453
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 7 cut(s) 323, 456, 497, 521, 863, 1112, 1415
CviQI GTAC 3 cut(s) 172, 320, 1453
DdeI CTNAG 8 cut(s) 70, 148, 774, 909, 999, 1017, 1177, 1350
DpnI GATC 8 cut(s) 288, 408, 752, 870, 966, 1043, 1233, 1473
DpnII GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 3 cut(s) 520, 1086, 1414
Eco24I GRGCYC 1 cut(s) 372
Eco47III AGCGCT 1 cut(s) 283
Eco57I CTGAAG 3 cut(s) 211, 1303, 1449
Eco81I CCTNAGG 2 cut(s) 774, 1017
EcoRII CCWGG 2 cut(s) 927, 1075
EcoT14I CCWWGG 3 cut(s) 520, 1086, 1414
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 3 cut(s) 520, 1086, 1414
FaeI CATG 7 cut(s) 326, 459, 500, 524, 866, 1115, 1418
FaqI GGGAC 3 cut(s) 83, 374, 959
FatI CATG 7 cut(s) 322, 455, 496, 520, 862, 1111, 1414
FauNDI CATATG 3 cut(s) 385, 1187, 1375
FbaI TGATCA 3 cut(s) 286, 964, 1471
Fnu4HI GCNGC 2 cut(s) 300, 615
FokI GGATG 1 cut(s) 779
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 2 cut(s) 300, 615
FspBI CTAG 2 cut(s) 546, 971
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 300, 615
GsaI CCCAGC 2 cut(s) 533, 561
GsuI CTGGAG 1 cut(s) 1314
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 5 cut(s) 327, 519, 609, 701, 932
HhaI GCGC 1 cut(s) 284
Hin1II CATG 7 cut(s) 326, 459, 500, 524, 866, 1115, 1418
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HincII GTYRAC 4 cut(s) 91, 415, 436, 1381
HindII GTYRAC 4 cut(s) 91, 415, 436, 1381
HindIII AAGCTT 2 cut(s) 254, 991
HinfI GANTC 5 cut(s) 340, 829, 882, 905, 1265
HphI GGTGA 7 cut(s) 26, 494, 695, 790, 1079, 1220, 1457
Hpy166II GTNNAC 7 cut(s) 91, 172, 415, 436, 581, 1050, 1381
Hpy188I TCNGA 5 cut(s) 510, 1144, 1168, 1264, 1429
Hpy188III TCNNGA 6 cut(s) 337, 356, 665, 863, 998, 1519
Hpy8I GTNNAC 7 cut(s) 91, 172, 415, 436, 581, 1050, 1381
HpyAV CCTTC 4 cut(s) 47, 198, 1186, 1199
HpyCH4III ACNGT 5 cut(s) 276, 478, 784, 1061, 1241
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 447
HpyF3I CTNAG 8 cut(s) 70, 148, 774, 909, 999, 1017, 1177, 1350
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 7 cut(s) 326, 459, 500, 524, 866, 1115, 1418
HspAI GCGC 1 cut(s) 282
Ksp22I TGATCA 3 cut(s) 286, 964, 1471
Kzo9I GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
Lsp1109I GCAGC 2 cut(s) 286, 601
LweI GCATC 1 cut(s) 622
MaeI CTAG 2 cut(s) 546, 971
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 4 cut(s) 115, 353, 778, 1150
MalI GATC 8 cut(s) 288, 408, 752, 870, 966, 1043, 1233, 1473
MboI GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
MboII GAAGA 8 cut(s) 55, 58, 760, 878, 1120, 1260, 1378, 1507
MfeI CAATTG 3 cut(s) 9, 636, 1475
MflI RGATCY 3 cut(s) 868, 1041, 1231
MhlI GDGCHC 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 1019
MroXI GAANNNNTTC 1 cut(s) 1423
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 3 cut(s) 360, 570, 593
MspA1I CMGCKG 1 cut(s) 533
MspR9I CCNGG 2 cut(s) 929, 1077
MunI CAATTG 3 cut(s) 9, 636, 1475
MvaI CCWGG 2 cut(s) 929, 1077
MwoI GCNNNNNNNGC 2 cut(s) 29, 447
NcoI CCATGG 2 cut(s) 520, 1414
NdeI CATATG 3 cut(s) 385, 1187, 1375
NdeII GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
NlaIII CATG 7 cut(s) 326, 459, 500, 524, 866, 1115, 1418
NlaIV GGNNCC 5 cut(s) 472, 762, 958, 1043, 1233
NmuCI GTSAC 3 cut(s) 353, 778, 1150
NspV TTCGAA 1 cut(s) 343
PagI TCATGA 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 1423
PfeI GAWTC 5 cut(s) 340, 829, 882, 905, 1265
PflFI GACNNNGTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 1440
PkrI GCNGC 2 cut(s) 301, 616
Psp6I CCWGG 2 cut(s) 927, 1075
PspFI CCCAGC 2 cut(s) 529, 557
PspGI CCWGG 2 cut(s) 927, 1075
PspN4I GGNNCC 5 cut(s) 472, 762, 958, 1043, 1233
PspPI GGNCC 1 cut(s) 699
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 3 cut(s) 868, 1041, 1231
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 3 cut(s) 173, 321, 1454
RsaNI GTAC 3 cut(s) 172, 320, 1453
RseI CAYNNNNRTG 3 cut(s) 360, 570, 593
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 2 cut(s) 300, 615
Sau3AI GATC 8 cut(s) 286, 406, 750, 868, 964, 1041, 1231, 1471
Sau96I GGNCC 1 cut(s) 699
ScaI AGTACT 1 cut(s) 1454
ScrFI CCNGG 2 cut(s) 929, 1077
SduI GDGCHC 1 cut(s) 372
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 2 cut(s) 81, 1384
SfuI TTCGAA 1 cut(s) 343
SmiMI CAYNNNNRTG 3 cut(s) 360, 570, 593
SpeI ACTAGT 1 cut(s) 970
SsiI CCGC 1 cut(s) 348
SspI AATATT 2 cut(s) 661, 1422
SspMI CTAG 2 cut(s) 546, 971
StyD4I CCNGG 2 cut(s) 927, 1075
StyI CCWWGG 3 cut(s) 520, 1086, 1414
TaaI ACNGT 5 cut(s) 276, 478, 784, 1061, 1241
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 343
TatI WGTACW 3 cut(s) 171, 319, 1452
TfiI GAWTC 5 cut(s) 340, 829, 882, 905, 1265
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 4 cut(s) 457, 577, 967, 984
TseFI GTSAC 3 cut(s) 353, 778, 1150
TseI GCWGC 2 cut(s) 299, 614
Tsp45I GTSAC 3 cut(s) 353, 778, 1150
TspDTI ATGAA 8 cut(s) 180, 186, 239, 372, 851, 865, 879, 933
TspRI CASTG 4 cut(s) 457, 577, 967, 984
Tth111I GACNNNGTC 1 cut(s) 95
Van91I CCANNNNNTGG 1 cut(s) 1440
XapI RAATTY 3 cut(s) 245, 602, 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 1423
XspI CTAG 2 cut(s) 546, 971
ZrmI AGTACT 1 cut(s) 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.