Rorug05G0036800

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017115
Physical Location & Seq
Forward (+)
2663612 .. 2667181
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0036800.1

Sequence Viewer

Length: 1629 bp
ATGGCGTTCATTCTTCAAGCTCACTCTGCCTCCTCAAAGTCTCAGACTGCTGATCTTCACGTCCGTCATGAAGAAAAACTGAAGGAGTTGAAGGAAACACTCGCAAATTCCGGAGAAGATCAACTGCAGCAATTGGTTATGGTTGATGCCATGCAACGCCTCGGCGTCGCTTATTACTTCCAAGAAGAAATTGATGCAATTTTAGAGAAGCAATACACCAGGTCATCAGCTTATAATGATAATGACGATGGAAATCATCAACTTCTTGAGGCTTCCCTACGTTTTCGACTATTGAGACAACAAGGCTTCCCTGTAACTCCAGAGGCATGTAACAAGATCAAGAACAATGAGAAACTCAAATCCGGACTAATAGCTGGTGATGAAGACATAAAAGGATTAGTGGAATTATGTGAAGCATCTCACTTGAGTTTCCAAGGAGAAGAAACGCTTGACGAAGCAGGAAAGCTCAGCCGCCAGCTTCTCACTGCCTGGGTCCCCAACAATCTCAAAGATCATCGCGCAACACTGCTTGTTGCGCACACACTGGAGCATCCTTATCACAAGAGCTTGACAAGATTCATGGCCAAGAACTTTTTGAATAATTTTCAAGGCCAAGAGAAATGGGTTTGTTCTTTACAAGAGCTAGCAAACCTAGAGTTCAACATGGTTGAATCCATAATCCGAAATGAAATCCTACAAGTATCTCGATGGTGGAAAGAACTAGGTTTGACCAAAGAGTTGAAGTTTGTGAGAGACCAGCCAATTAAATGGTACACATGGCCGATGGCGAGCCTCGTTGATCCACGATTATCAGATGAAAGAATTGAACTCACAAAAGCAATCTCTCTTGTTTACATTATAGATGACATTTTTGACGTTCATGGAACTCTGGATGAACTCATTCACTTCACAGCAGCAGTTGAGAGATGGGATACTGATACAAATGATGAGCTACCGAATTACATGAAAACATGTTTCAAGGCTCTTAATGAGATTACCAATGATATCAGCGAGAGTGTCTACGAAAAGCACGGATGGAACCCTATTGAAACCCTAAGAGAATCGTGGGCAAGATTGTGCAAGGCATTCTTAGTAGAAGCAGAATGGTTTAGACATGGGCAGTTGCCAAACTCCGAGGACTACTTGAAGAATGGGATTATCAGTTCAGGGGTGCCTGCAGTTTTAACCCACGCCTTCTTTATTATTGGTCAAGATATGACCAAGGAAACCATAGATCTTTTCAACAACATCAACTTACCTAGTATCGTGTCTTCAACGGCCACGATACTTCGGCTATGGGATGACTTTGGAAGCGCCATGGACGAGGAGCAAAATGGGTATGATGGATCATACATGCAGTGCTATATGGAAGAACATCCAGGCTCTTTGGTCGAAGAAGCGCAAGCATATGTAATCCGAAAGATTTCGGATGAATGGAAGTACCTCAACCAAGAATGCTTCTCTTGCAATCCATTTTCAGAGTCCTTTACACAACTCGCTCTCAATGTTTCTAGAATGGTTCCCATGATGTACGATTACAATGCCCATCATCGTCTTCCAAGCCTTGAGGAGAATATGAAGTCGTTGCTTTTGGATAGTTTTCTTTCCAAAGGCATCACTCATGGCTAG

Protein Analysis

542

Amino Acids

62.41

Weight (kDa)

5.02

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 4 - 172 2.7e-34 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 239 - 480 6.3e-77 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 279 - 480 7.8e-49 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G20860
fragaria_vesca FvH4_3g10830
malus_domestica MD10G1247300.v1.1
prunus_persica Prupe.4G096000_v2.0.a1 Prupe.4G096100_v2.0.a1
pyrus_communis pycom05g25170 pycom10g20520
rosa_chinensis RchiOBHm_Chr5g0017541
rosa_laevigata RLG00000032297
rosa_multiflora Rmu_sc0002565.1_g000003
rosa_roxburghii Rroxscaffold_1G00059900
rosa_rugosa Rorug05G0036800
rosa_wichuraiana Rw5G011300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
Acc16I TGCGCA 1 cut(s) 537
AccB1I GGYRCC 1 cut(s) 1171
AccI GTMKAC 1 cut(s) 1020
AccII CGCG 1 cut(s) 519
AccIII TCCGGA 2 cut(s) 110, 362
AciI CCGC 1 cut(s) 472
AclWI GGATC 2 cut(s) 794, 1354
AcoI YGGCCR 3 cut(s) 582, 779, 1278
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 101
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 3 cut(s) 773, 1442, 1532
AflIII ACRYGT 1 cut(s) 971
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 3 cut(s) 218, 488, 1378
AloI GAACNNNNNNTCC 2 cut(s) 1147, 1179
AluBI AGCT 8 cut(s) 20, 230, 374, 466, 478, 567, 643, 952
AluI AGCT 8 cut(s) 20, 230, 374, 466, 478, 567, 643, 952
Alw26I GTCTC 3 cut(s) 45, 289, 747
AlwI GGATC 2 cut(s) 794, 1354
Aor13HI TCCGGA 2 cut(s) 110, 362
AoxI GGCC 4 cut(s) 582, 610, 779, 1278
ApeKI GCWGC 2 cut(s) 127, 914
ApoI RAATTY 1 cut(s) 106
Asp700I GAANNNNTTC 2 cut(s) 900, 1423
AspLEI GCGC 4 cut(s) 521, 538, 1316, 1402
AspS9I GGNCC 1 cut(s) 493
AsuHPI GGTGA 1 cut(s) 389
AsuNHI GCTAGC 1 cut(s) 643
AvaII GGWCC 1 cut(s) 493
BalI TGGCCA 1 cut(s) 584
BanI GGYRCC 1 cut(s) 1171
BarI GAAGNNNNNNTAC 2 cut(s) 1255, 1287
BbsI GAAGAC 3 cut(s) 390, 1263, 1547
BbvI GCAGC 2 cut(s) 139, 926
BccI CCATC 7 cut(s) 242, 702, 778, 921, 1029, 1337, 1554
BceAI ACGGC 1 cut(s) 1293
BcgI CGANNNNNNTGC 2 cut(s) 1523, 1557
BciT130I CCWGG 3 cut(s) 220, 490, 1380
BciVI GTATCC 1 cut(s) 925
BcoDI GTCTC 3 cut(s) 45, 289, 747
BfaI CTAG 6 cut(s) 644, 653, 722, 1260, 1512, 1627
BfmI CTRYAG 2 cut(s) 125, 1176
BfoI RGCGCY 1 cut(s) 1317
BfuI GTATCC 1 cut(s) 925
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 3 cut(s) 128, 472, 915
BlpI GCTNAGC 1 cut(s) 467
BlsI GCNGC 3 cut(s) 129, 473, 916
Bme1390I CCNGG 3 cut(s) 220, 490, 1380
Bme18I GGWCC 1 cut(s) 493
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 493
BmiI GGNNCC 5 cut(s) 494, 495, 1040, 1173, 1521
BmrFI CCNGG 3 cut(s) 220, 490, 1380
BmsI GCATC 5 cut(s) 136, 184, 425, 559, 1623
BmtI GCTAGC 1 cut(s) 647
BpiI GAAGAC 3 cut(s) 390, 1263, 1547
BpmI CTGGAG 2 cut(s) 303, 566
Bpu1102I GCTNAGC 1 cut(s) 467
BpuEI CTTGAG 3 cut(s) 287, 445, 1586
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 747
BsaJI CCNNGG 6 cut(s) 160, 433, 489, 1134, 1221, 1317
BsaWI WCCGGW 2 cut(s) 110, 362
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bse1I ACTGG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 252
BseAI TCCGGA 2 cut(s) 110, 362
BseBI CCWGG 3 cut(s) 220, 490, 1380
BseDI CCNNGG 6 cut(s) 160, 433, 489, 1134, 1221, 1317
BseGI GGATG 6 cut(s) 550, 898, 1040, 1306, 1375, 1435
BseJI GATNNNNATC 1 cut(s) 252
BseMII CTCAG 2 cut(s) 56, 481
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 3 cut(s) 22, 1340, 1583
BseXI GCAGC 2 cut(s) 139, 926
Bsh1236I CGCG 1 cut(s) 519
BshFI GGCC 4 cut(s) 584, 612, 781, 1280
BshNI GGYRCC 1 cut(s) 1171
BsiSI CCGG 2 cut(s) 111, 363
BslFI GGGAC 1 cut(s) 479
BsmAI GTCTC 3 cut(s) 45, 289, 747
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 2 cut(s) 1085, 1460
BsnI GGCC 4 cut(s) 584, 612, 781, 1280
Bso31I GGTCTC 1 cut(s) 747
Bsp13I TCCGGA 2 cut(s) 110, 362
Bsp143I GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
Bsp1720I GCTNAGC 1 cut(s) 467
Bsp19I CCATGG 1 cut(s) 1317
BspACI CCGC 1 cut(s) 472
BspANI GGCC 4 cut(s) 584, 612, 781, 1280
BspCNI CTCAG 2 cut(s) 55, 480
BspEI TCCGGA 2 cut(s) 110, 362
BspFNI CGCG 1 cut(s) 519
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 5 cut(s) 494, 495, 1040, 1173, 1521
BspMAI CTGCAG 2 cut(s) 129, 1180
BspOI GCTAGC 1 cut(s) 647
BspPI GGATC 2 cut(s) 794, 1354
BspT107I GGYRCC 1 cut(s) 1171
BspTNI GGTCTC 1 cut(s) 747
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 6 cut(s) 160, 433, 489, 1134, 1221, 1317
BssMI GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 3 cut(s) 433, 1221, 1317
Bst2UI CCWGG 3 cut(s) 220, 490, 1380
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 5 cut(s) 476, 645, 790, 1176, 1404
BstDEI CTNAG 4 cut(s) 42, 467, 1055, 1090
BstDSI CCRYGG 1 cut(s) 1317
BstF5I GGATG 6 cut(s) 550, 898, 1040, 1306, 1375, 1435
BstFNI CGCG 1 cut(s) 519
BstH2I RGCGCY 1 cut(s) 1317
BstHHI GCGC 4 cut(s) 521, 538, 1316, 1402
BstKTI GATC 7 cut(s) 55, 121, 339, 514, 802, 1237, 1349
BstMAI GTCTC 3 cut(s) 45, 289, 747
BstMBI GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
BstMWI GCNNNNNNNGC 3 cut(s) 26, 535, 1464
BstNI CCWGG 3 cut(s) 220, 490, 1380
BstNSI RCATGY 3 cut(s) 330, 975, 1357
BstSCI CCNGG 3 cut(s) 218, 488, 1378
BstSFI CTRYAG 2 cut(s) 125, 1176
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 139, 926
BstV2I GAAGAC 3 cut(s) 390, 1263, 1547
BstX2I RGATCY 1 cut(s) 1234
BstXI CCANNNNNNTGG 1 cut(s) 768
BstYI RGATCY 1 cut(s) 1234
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 4 cut(s) 584, 612, 781, 1280
BtgI CCRYGG 1 cut(s) 1317
BtgZI GCGATG 1 cut(s) 500
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 6 cut(s) 550, 898, 1040, 1306, 1375, 1435
BtsI GCAGTG 3 cut(s) 483, 524, 1364
BtsIMutI CAGTG 4 cut(s) 483, 524, 542, 1364
Cac8I GCNNGC 5 cut(s) 476, 645, 790, 1176, 1404
CciI TCATGA 1 cut(s) 67
CfoI GCGC 4 cut(s) 521, 538, 1316, 1402
Cfr13I GGNCC 1 cut(s) 493
CseI GACGC 1 cut(s) 154
CsiI ACCWGGT 1 cut(s) 218
Csp6I GTAC 3 cut(s) 772, 1441, 1531
CviQI GTAC 3 cut(s) 772, 1441, 1531
DdeI CTNAG 4 cut(s) 42, 467, 1055, 1090
DpnI GATC 7 cut(s) 54, 120, 338, 513, 801, 1236, 1348
DpnII GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
EaeI YGGCCR 3 cut(s) 582, 779, 1278
Eco130I CCWWGG 3 cut(s) 433, 1221, 1317
Eco31I GGTCTC 1 cut(s) 747
Eco32I GATATC 1 cut(s) 1006
Eco47I GGWCC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 493
EcoRII CCWGG 3 cut(s) 218, 488, 1378
EcoRV GATATC 1 cut(s) 1006
EcoT14I CCWWGG 3 cut(s) 433, 1221, 1317
ErhI CCWWGG 3 cut(s) 433, 1221, 1317
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 1073, 1105
FaqI GGGAC 1 cut(s) 479
FauNDI CATATG 1 cut(s) 1408
FblI GTMKAC 1 cut(s) 1020
Fnu4HI GCNGC 3 cut(s) 128, 472, 915
FokI GGATG 6 cut(s) 537, 905, 1047, 1313, 1362, 1442
Fsp4HI GCNGC 3 cut(s) 128, 472, 915
FspBI CTAG 6 cut(s) 644, 653, 722, 1260, 1512, 1627
FspI TGCGCA 1 cut(s) 537
GlaI GCGC 4 cut(s) 520, 537, 1315, 1401
GluI GCNGC 3 cut(s) 128, 472, 915
GsuI CTGGAG 2 cut(s) 303, 566
HaeII RGCGCY 1 cut(s) 1317
HaeIII GGCC 4 cut(s) 584, 612, 781, 1280
HapII CCGG 2 cut(s) 111, 363
HgaI GACGC 1 cut(s) 154
HhaI GCGC 4 cut(s) 521, 538, 1316, 1402
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 4 cut(s) 519, 536, 1314, 1400
HinP1I GCGC 4 cut(s) 519, 536, 1314, 1400
HinfI GANTC 4 cut(s) 576, 671, 1061, 1481
HpaII CCGG 2 cut(s) 111, 363
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 3 cut(s) 774, 853, 1021
Hpy188I TCNGA 7 cut(s) 45, 683, 814, 1135, 1418, 1429, 1480
Hpy8I GTNNAC 3 cut(s) 774, 853, 1021
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 76, 85, 1204
HpyCH4IV ACGT 3 cut(s) 60, 280, 876
HpyCH4V TGCA 7 cut(s) 127, 154, 197, 1080, 1178, 1357, 1467
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 535, 1464
HpyF3I CTNAG 4 cut(s) 42, 467, 1055, 1090
HpySE526I ACGT 3 cut(s) 60, 280, 876
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 4 cut(s) 519, 536, 1314, 1400
KflI GGGWCCC 1 cut(s) 493
Kpn2I TCCGGA 2 cut(s) 110, 362
Kzo9I GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
LmnI GCTCC 2 cut(s) 547, 1327
Lsp1109I GCAGC 2 cut(s) 139, 926
LweI GCATC 5 cut(s) 136, 184, 425, 559, 1623
MabI ACCWGGT 1 cut(s) 218
MaeI CTAG 6 cut(s) 644, 653, 722, 1260, 1512, 1627
MaeII ACGT 3 cut(s) 60, 280, 876
MaeIII GTNAC 2 cut(s) 313, 329
MalI GATC 7 cut(s) 54, 120, 338, 513, 801, 1236, 1348
MboI GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 1 cut(s) 1234
MlsI TGGCCA 1 cut(s) 584
MluCI AATT 9 cut(s) 106, 131, 189, 198, 404, 601, 762, 822, 958
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 1 cut(s) 1490
Mox20I TGGCCA 1 cut(s) 584
MroI TCCGGA 2 cut(s) 110, 362
MroXI GAANNNNTTC 2 cut(s) 900, 1423
MscI TGGCCA 1 cut(s) 584
MseI TTAA 3 cut(s) 765, 987, 1184
Msp20I TGGCCA 1 cut(s) 584
MspI CCGG 2 cut(s) 111, 363
MspR9I CCNGG 3 cut(s) 220, 490, 1380
MunI CAATTG 1 cut(s) 131
Mva1269I GAATGC 2 cut(s) 1085, 1460
MvaI CCWGG 3 cut(s) 220, 490, 1380
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 3 cut(s) 26, 535, 1464
NcoI CCATGG 1 cut(s) 1317
NdeI CATATG 1 cut(s) 1408
NdeII GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
NheI GCTAGC 1 cut(s) 643
NlaIV GGNNCC 5 cut(s) 494, 495, 1040, 1173, 1521
NmeAIII GCCGAG 1 cut(s) 141
NsbI TGCGCA 1 cut(s) 537
NspI RCATGY 3 cut(s) 330, 975, 1357
PagI TCATGA 1 cut(s) 67
PciI ACATGT 1 cut(s) 971
PctI GAATGC 2 cut(s) 1085, 1460
PdmI GAANNNNTTC 2 cut(s) 900, 1423
PfeI GAWTC 3 cut(s) 576, 671, 1061
PkrI GCNGC 3 cut(s) 129, 473, 916
PleI GAGTC 1 cut(s) 1489
PpsI GAGTC 1 cut(s) 1489
PpuMI RGGWCCY 1 cut(s) 493
PscI ACATGT 1 cut(s) 971
PsiI TTATAA 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 493
Psp6I CCWGG 3 cut(s) 218, 488, 1378
PspGI CCWGG 3 cut(s) 218, 488, 1378
PspN4I GGNNCC 5 cut(s) 494, 495, 1040, 1173, 1521
PspPI GGNCC 1 cut(s) 493
PspPPI RGGWCCY 1 cut(s) 493
PstI CTGCAG 2 cut(s) 129, 1180
PsuI RGATCY 1 cut(s) 1234
RsaI GTAC 3 cut(s) 773, 1442, 1532
RsaNI GTAC 3 cut(s) 772, 1441, 1531
SaqAI TTAA 3 cut(s) 765, 987, 1184
SatI GCNGC 3 cut(s) 128, 472, 915
Sau3AI GATC 7 cut(s) 52, 118, 336, 511, 799, 1234, 1346
Sau96I GGNCC 1 cut(s) 493
SchI GAGTC 1 cut(s) 1490
ScrFI CCNGG 3 cut(s) 220, 490, 1380
SexAI ACCWGGT 1 cut(s) 218
SfaNI GCATC 5 cut(s) 136, 184, 425, 559, 1623
SfcI CTRYAG 2 cut(s) 125, 1176
SinI GGWCC 1 cut(s) 493
SmlI CTYRAG 3 cut(s) 266, 424, 1565
SmoI CTYRAG 3 cut(s) 266, 424, 1565
Sse9I AATT 9 cut(s) 106, 131, 189, 198, 404, 601, 762, 822, 958
SsiI CCGC 1 cut(s) 472
SspMI CTAG 6 cut(s) 644, 653, 722, 1260, 1512, 1627
StyD4I CCNGG 3 cut(s) 218, 488, 1378
StyI CCWWGG 3 cut(s) 433, 1221, 1317
TaiI ACGT 3 cut(s) 63, 283, 879
TaqI TCGA 3 cut(s) 286, 706, 1392
TasI AATT 9 cut(s) 106, 131, 189, 198, 404, 601, 762, 822, 958
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 3 cut(s) 576, 671, 1061
Tru1I TTAA 3 cut(s) 765, 987, 1184
Tru9I TTAA 3 cut(s) 765, 987, 1184
TscAI CASTG 4 cut(s) 490, 531, 549, 1364
TseI GCWGC 2 cut(s) 127, 914
TspGWI ACGGA 2 cut(s) 53, 1047
TspRI CASTG 4 cut(s) 490, 531, 549, 1364
VpaK11BI GGWCC 1 cut(s) 493
XapI RAATTY 1 cut(s) 106
XbaI TCTAGA 1 cut(s) 1511
XceI RCATGY 3 cut(s) 330, 975, 1357
XmiI GTMKAC 1 cut(s) 1020
XmnI GAANNNNTTC 2 cut(s) 900, 1423
XspI CTAG 6 cut(s) 644, 653, 722, 1260, 1512, 1627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.