Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017115

Physical Location & Seq

Genomic Coordinates Reverse (-)

13244578 .. 13246173

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032297

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGAATTCGTAGTACTATTGCTTTCTTTGTTCCTGAGTTTAGTTTCATGTGCAAGTTCTGATCCAACCACTGAAACTCTCAGGCTGTGCATGACAACTCAACTCGGTGACTACAATGAAACGTCTCAAATCATCCACACCTCAAACTCATCTTCGTATTCATCTATCTTGAAATCCTCACAACAAAATCCTAGATGGCTAAACTCCACATCAAAGCCTCTCCTCATTCTCACACCTTTCAACGAGTCCGAAATCCGAGCAGCTGTGCTTTGCAGCAGAAAACGTGGCCTACAAATCAGGGTCAGAAGTGGAGGCCATGACTATGAAGGGCTCTCATATCTCTGCAAGACGCCATTCATCATCATTGACATGATCAACTTCAAGTCCATTGATGTCAACCTTGCAGATGAAACAGCTTGGGTTCAGTCAGGAGCTACGCTAGGTGAGCTTTACTATAGCATTGGGAAGAAAAGTGACGTCCATGGATTCCCAGCTGGGATTTGTCCAACTGTTGGAATTGGTGGTCATTTTAGTGGTGGTGGATTTGGGACCTTGATTAGGAAACATGGCCTAGCAGCTGACCATGTCATAGATGCTATTTTAATTGATGCTAATGGGAAAATCATGAACAGAAAAACAATGGGGGAGGATCTGTTTTGGGCCATTAGAGGAGGTGGAGGAGCAAGTTTTGGGATCATAGTTTCATGGAAGATCAAATTGGTTCAGGTCCCAAAAGTTGTGACTGGTTTTACAGTTAACAAGTTAATATCACAAGGTGGAAGTAGCCTTGTGAATAGGTGGCAGTACATTGCAGACAAGTTCCATGAGGATCTTTTCATGAGAGTCATCCTTCAGAATGTTGGGAGTGGGAGTCAGAAACAAGTCCAAGCCGCTTTCAATTCTTTGTTTCTAGGAGGGATTGAGACACTAATGCCATTGATGAAACAGAGCTTTCCAGAGTTGGGTTTGGAGGCAAAAGACTGCATTGAAATGAGTTGGGTTCAATCTGCTCAGTACTTTGCTGGGTACAAGAAAGAGCAGCCTTCGGAGGTCTTGTTGTCTAGGGAGGCACTCTATAAGAGCAATTTCAAGGCCAAATCCGACTTTGTAATAAACCCTATTCCAGAAATCGGGCTACGAGGGATTTGGGAGAGGTTCATGCAAGAAGAACTAGCCTTCATGATACTGGATCCCTATGGTGGAAAGATGGCTGAGATTTCGGAATTCGAAATTCCGTTTCCTCATAGGAAAGGGAATCTGTACAACATACAGTACATTGTGAAGTGGGATGTGAATGAGGTCAGTGAAGCCAACAAGCATATGAATTGGATGAATATGCTTTATGGGTTTATGAAGCCCTATGTTTCAAATTCTCCAAGGGGTGCCTACATCAATTACAAGGATCTTCAGCTGGGGACCAACAACAAAGGCACTAACACAAGCTACATAGAAGCGAGTAGTTGGGGGAGAAAGTACTTCAAAAACAATTTCAAGAGGCTTGCACAAGTGAAGAGCAAGGTTGATCCACATAACTTCTTCAGAAATGAGCAGAGTATTCCTCCTCTTCCTGGTTTGTTTGGCATTAAAGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0030312 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

532

Amino Acids

59.45

Weight (kDa)

9.0

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	73 - 209	6.6e-23	FAD binding domain
BBE	PF08031	462 - 520	4.6e-20	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20860
fragaria_vesca	FvH4_3g10830
malus_domestica	MD10G1247300.v1.1
prunus_persica	Prupe.4G096000_v2.0.a1 Prupe.4G096100_v2.0.a1
pyrus_communis	pycom05g25170 pycom10g20520
rosa_chinensis	RchiOBHm_Chr5g0017541
rosa_laevigata	RLG00000032297
rosa_multiflora	Rmu_sc0002565.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059900
rosa_rugosa	Rorug05G0036800
rosa_wichuraiana	Rw5G011300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	480
AccB1I	GGYRCC	1 cut(s)	1382
AccB7I	CCANNNNNTGG	1 cut(s)	512
AciI	CCGC	1 cut(s)	891
AclWI	GGATC	8 cut(s)	56, 657, 701, 837, 1184, 1197, 1410, 1517
AcsI	RAATTY	4 cut(s)	5, 1223, 1230, 1369
AcuI	CTGAAG	3 cut(s)	836, 1391, 1522
AcyI	GRCGYC	2 cut(s)	350, 477
AdeI	CACNNNGTG	1 cut(s)	776
AfaI	GTAC	7 cut(s)	15, 806, 1016, 1028, 1262, 1274, 1475
AfiI	CCNNNNNNNGG	6 cut(s)	512, 558, 962, 1130, 1199, 1568
AjnI	CCWGG	1 cut(s)	1567
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	9 cut(s)	263, 416, 434, 448, 494, 578, 951, 1411, 1443
AluI	AGCT	9 cut(s)	263, 416, 434, 448, 494, 578, 951, 1411, 1443
Alw26I	GTCTC	2 cut(s)	129, 917
AlwI	GGATC	8 cut(s)	56, 657, 701, 837, 1184, 1197, 1410, 1517
AoxI	GGCC	5 cut(s)	286, 313, 568, 660, 1092
ApeKI	GCWGC	4 cut(s)	260, 273, 575, 1039
ApoI	RAATTY	4 cut(s)	5, 1223, 1230, 1369
AspS9I	GGNCC	4 cut(s)	549, 660, 727, 1416
AsuHPI	GGTGA	2 cut(s)	119, 455
AsuII	TTCGAA	1 cut(s)	1227
AvaII	GGWCC	3 cut(s)	549, 727, 1416
BamHI	GGATCC	1 cut(s)	1189
BanI	GGYRCC	1 cut(s)	1382
BanII	GRGCYC	1 cut(s)	333
BbvI	GCAGC	4 cut(s)	272, 285, 587, 1051
BccI	CCATC	2 cut(s)	189, 1201
BciT130I	CCWGG	1 cut(s)	1569
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	129, 917
BfaI	CTAG	6 cut(s)	192, 440, 572, 911, 1062, 1172
BfmI	CTRYAG	1 cut(s)	454
BisI	GCNGC	5 cut(s)	261, 274, 576, 891, 1040
BlsI	GCNGC	5 cut(s)	262, 275, 577, 892, 1041
BmcAI	AGTACT	3 cut(s)	15, 1016, 1475
Bme1390I	CCNGG	1 cut(s)	1569
Bme18I	GGWCC	3 cut(s)	549, 727, 1416
BmgT120I	GGNCC	4 cut(s)	549, 660, 727, 1416
BmiI	GGNNCC	5 cut(s)	550, 729, 1191, 1384, 1417
BmrFI	CCNGG	1 cut(s)	1569
BmsI	GCATC	2 cut(s)	583, 598
BplI	GAGNNNNNCTC	2 cut(s)	1543, 1575
Bpu14I	TTCGAA	1 cut(s)	1227
BsaHI	GRCGYC	2 cut(s)	350, 477
BsaJI	CCNNGG	2 cut(s)	481, 1376
BsaXI	ACNNNNNCTCC	6 cut(s)	638, 668, 856, 886, 1040, 1070
Bsc4I	CCNNNNNNNGG	6 cut(s)	512, 558, 962, 1130, 1199, 1568
Bse1I	ACTGG	2 cut(s)	748, 1191
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	1569
BseDI	CCNNGG	2 cut(s)	481, 1376
BseGI	GGATG	4 cut(s)	132, 846, 1294, 1335
BseLI	CCNNNNNNNGG	6 cut(s)	512, 558, 962, 1130, 1199, 1568
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	4 cut(s)	26, 94, 1025, 1203
BseNI	ACTGG	2 cut(s)	748, 1191
BseRI	GAGGAG	4 cut(s)	212, 684, 693, 1551
BseXI	GCAGC	4 cut(s)	272, 285, 587, 1051
BseYI	CCCAGC	4 cut(s)	490, 494, 1022, 1411
BshFI	GGCC	5 cut(s)	288, 315, 570, 662, 1094
BshNI	GGYRCC	1 cut(s)	1382
BslFI	GGGAC	3 cut(s)	562, 713, 1429
BslI	CCNNNNNNNGG	6 cut(s)	512, 558, 962, 1130, 1199, 1568
BsmAI	GTCTC	2 cut(s)	129, 917
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	3 cut(s)	562, 713, 1429
BsnI	GGCC	5 cut(s)	288, 315, 570, 662, 1094
Bsp119I	TTCGAA	1 cut(s)	1227
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp1407I	TGTACA	1 cut(s)	1260
Bsp143I	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	1 cut(s)	891
BspANI	GGCC	5 cut(s)	288, 315, 570, 662, 1094
BspCNI	CTCAG	4 cut(s)	27, 93, 1024, 1204
BspHI	TCATGA	3 cut(s)	624, 837, 1179
BspLI	GGNNCC	5 cut(s)	550, 729, 1191, 1384, 1417
BspPI	GGATC	8 cut(s)	56, 657, 701, 837, 1184, 1197, 1410, 1517
BspQI	GCTCTTC	1 cut(s)	1505
BspT104I	TTCGAA	1 cut(s)	1227
BspT107I	GGYRCC	1 cut(s)	1382
BsrDI	GCAATG	1 cut(s)	807
BsrGI	TGTACA	1 cut(s)	1260
BsrI	ACTGG	2 cut(s)	748, 1191
BssECI	CCNNGG	2 cut(s)	481, 1376
BssMI	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
BssNI	GRCGYC	2 cut(s)	350, 477
BssT1I	CCWWGG	2 cut(s)	481, 1376
Bst2UI	CCWGG	1 cut(s)	1569
Bst4CI	ACNGT	3 cut(s)	511, 754, 1272
Bst6I	CTCTTC	2 cut(s)	1505, 1569
BstACI	GRCGYC	2 cut(s)	350, 477
BstAUI	TGTACA	1 cut(s)	1260
BstBI	TTCGAA	1 cut(s)	1227
BstC8I	GCNNGC	1 cut(s)	1500
BstDEI	CTNAG	4 cut(s)	35, 80, 1011, 1212
BstDSI	CCRYGG	1 cut(s)	481
BstENI	CCTNNNNNAGG	1 cut(s)	556
BstF5I	GGATG	4 cut(s)	132, 846, 1294, 1335
BstKTI	GATC	9 cut(s)	64, 375, 652, 696, 714, 832, 1192, 1405, 1525
BstMAI	GTCTC	2 cut(s)	129, 917
BstMBI	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	1 cut(s)	1569
BstSCI	CCNGG	1 cut(s)	1567
BstSFI	CTRYAG	1 cut(s)	454
BstV1I	GCAGC	4 cut(s)	272, 285, 587, 1051
BstX2I	RGATCY	4 cut(s)	649, 829, 1189, 1402
BstYI	RGATCY	4 cut(s)	649, 829, 1189, 1402
BsuRI	GGCC	5 cut(s)	288, 315, 570, 662, 1094
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	4 cut(s)	132, 846, 1294, 1335
BtsIMutI	CAGTG	2 cut(s)	69, 1309
Cac8I	GCNNGC	1 cut(s)	1500
CciI	TCATGA	3 cut(s)	624, 837, 1179
Cfr13I	GGNCC	4 cut(s)	549, 660, 727, 1416
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	7 cut(s)	14, 805, 1015, 1027, 1261, 1273, 1474
CviQI	GTAC	7 cut(s)	14, 805, 1015, 1027, 1261, 1273, 1474
DdeI	CTNAG	4 cut(s)	35, 80, 1011, 1212
DpnI	GATC	9 cut(s)	63, 374, 651, 695, 713, 831, 1191, 1404, 1524
DpnII	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
DraIII	CACNNNGTG	1 cut(s)	776
Eam1104I	CTCTTC	2 cut(s)	1505, 1569
EarI	CTCTTC	2 cut(s)	1505, 1569
Eco130I	CCWWGG	2 cut(s)	481, 1376
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	3 cut(s)	549, 727, 1416
Eco57I	CTGAAG	3 cut(s)	836, 1391, 1522
EcoNI	CCTNNNNNAGG	1 cut(s)	556
EcoO109I	RGGNCCY	2 cut(s)	549, 727
EcoRI	GAATTC	2 cut(s)	5, 1223
EcoRII	CCWGG	1 cut(s)	1567
EcoT14I	CCWWGG	2 cut(s)	481, 1376
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	481, 1376
Esp3I	CGTCTC	1 cut(s)	129
FaqI	GGGAC	3 cut(s)	562, 713, 1429
FauNDI	CATATG	1 cut(s)	1320
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	5 cut(s)	261, 274, 576, 891, 1040
FokI	GGATG	4 cut(s)	119, 833, 1301, 1342
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	5 cut(s)	261, 274, 576, 891, 1040
FspBI	CTAG	6 cut(s)	192, 440, 572, 911, 1062, 1172
GluI	GCNGC	5 cut(s)	261, 274, 576, 891, 1040
GsaI	CCCAGC	4 cut(s)	494, 498, 1026, 1415
HaeIII	GGCC	5 cut(s)	288, 315, 570, 662, 1094
HgaI	GACGC	1 cut(s)	358
Hin1I	GRCGYC	2 cut(s)	350, 477
HincII	GTYRAC	2 cut(s)	397, 757
HindII	GTYRAC	2 cut(s)	397, 757
HinfI	GANTC	5 cut(s)	245, 486, 843, 871, 1255
HpaI	GTTAAC	1 cut(s)	757
HphI	GGTGA	2 cut(s)	119, 455
Hpy166II	GTNNAC	2 cut(s)	397, 757
Hpy188III	TCNNGA	9 cut(s)	34, 169, 429, 625, 838, 956, 1124, 1180, 1492
Hpy8I	GTNNAC	2 cut(s)	397, 757
HpyAV	CCTTC	4 cut(s)	320, 860, 1053, 1186
HpyCH4III	ACNGT	3 cut(s)	511, 754, 1272
HpyCH4IV	ACGT	3 cut(s)	122, 283, 477
HpyCH4V	TGCA	9 cut(s)	53, 90, 273, 345, 404, 812, 984, 1162, 1502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	4 cut(s)	35, 80, 1011, 1212
HpySE526I	ACGT	3 cut(s)	122, 283, 477
Hsp92I	GRCGYC	2 cut(s)	350, 477
Ksp22I	TGATCA	1 cut(s)	372
KspAI	GTTAAC	1 cut(s)	757
Kzo9I	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
LguI	GCTCTTC	1 cut(s)	1505
LmnI	GCTCC	2 cut(s)	431, 680
Lsp1109I	GCAGC	4 cut(s)	272, 285, 587, 1051
LweI	GCATC	2 cut(s)	583, 598
MaeI	CTAG	6 cut(s)	192, 440, 572, 911, 1062, 1172
MaeII	ACGT	3 cut(s)	122, 283, 477
MaeIII	GTNAC	3 cut(s)	107, 473, 739
MalI	GATC	9 cut(s)	63, 374, 651, 695, 713, 831, 1191, 1404, 1524
MboI	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
MboII	GAAGA	8 cut(s)	144, 478, 721, 1178, 1397, 1522, 1528, 1556
MflI	RGATCY	4 cut(s)	649, 829, 1189, 1402
MhlI	GDGCHC	1 cut(s)	333
MlyI	GAGTC	3 cut(s)	254, 852, 880
MmeI	TCCRAC	4 cut(s)	89, 493, 530, 1125
MseI	TTAA	5 cut(s)	602, 756, 764, 1584, 1594
MslI	CAYNNNNRTG	4 cut(s)	321, 368, 531, 989
MspA1I	CMGCKG	4 cut(s)	263, 494, 578, 1411
MspR9I	CCNGG	1 cut(s)	1569
MvaI	CCWGG	1 cut(s)	1569
MwoI	GCNNNNNNNGC	1 cut(s)	445
NcoI	CCATGG	1 cut(s)	481
NdeI	CATATG	1 cut(s)	1320
NdeII	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
NlaIV	GGNNCC	5 cut(s)	550, 729, 1191, 1384, 1417
NmuCI	GTSAC	3 cut(s)	107, 473, 739
NspV	TTCGAA	1 cut(s)	1227
PagI	TCATGA	3 cut(s)	624, 837, 1179
PciSI	GCTCTTC	1 cut(s)	1505
PfeI	GAWTC	2 cut(s)	486, 1255
PflFI	GACNNNGTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	512
PkrI	GCNGC	5 cut(s)	262, 275, 577, 892, 1041
PleI	GAGTC	3 cut(s)	253, 851, 879
PpsI	GAGTC	3 cut(s)	253, 851, 879
PpuMI	RGGWCCY	2 cut(s)	549, 727
Psp5II	RGGWCCY	2 cut(s)	549, 727
Psp6I	CCWGG	1 cut(s)	1567
PspFI	CCCAGC	4 cut(s)	490, 494, 1022, 1411
PspGI	CCWGG	1 cut(s)	1567
PspN4I	GGNNCC	5 cut(s)	550, 729, 1191, 1384, 1417
PspPI	GGNCC	4 cut(s)	549, 660, 727, 1416
PspPPI	RGGWCCY	2 cut(s)	549, 727
PsuI	RGATCY	4 cut(s)	649, 829, 1189, 1402
PsyI	GACNNNGTC	1 cut(s)	584
PvuII	CAGCTG	4 cut(s)	263, 494, 578, 1411
RsaI	GTAC	7 cut(s)	15, 806, 1016, 1028, 1262, 1274, 1475
RsaNI	GTAC	7 cut(s)	14, 805, 1015, 1027, 1261, 1273, 1474
RseI	CAYNNNNRTG	4 cut(s)	321, 368, 531, 989
SapI	GCTCTTC	1 cut(s)	1505
SaqAI	TTAA	5 cut(s)	602, 756, 764, 1584, 1594
SatI	GCNGC	5 cut(s)	261, 274, 576, 891, 1040
Sau3AI	GATC	9 cut(s)	61, 372, 649, 693, 711, 829, 1189, 1402, 1522
Sau96I	GGNCC	4 cut(s)	549, 660, 727, 1416
ScaI	AGTACT	3 cut(s)	15, 1016, 1475
SchI	GAGTC	3 cut(s)	254, 852, 880
ScrFI	CCNGG	1 cut(s)	1569
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	2 cut(s)	583, 598
SfcI	CTRYAG	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	1227
SinI	GGWCC	3 cut(s)	549, 727, 1416
SmiMI	CAYNNNNRTG	4 cut(s)	321, 368, 531, 989
SsiI	CCGC	1 cut(s)	891
SspMI	CTAG	6 cut(s)	192, 440, 572, 911, 1062, 1172
StyD4I	CCNGG	1 cut(s)	1567
StyI	CCWWGG	2 cut(s)	481, 1376
TaaI	ACNGT	3 cut(s)	511, 754, 1272
TaiI	ACGT	3 cut(s)	125, 286, 480
TaqI	TCGA	1 cut(s)	1227
TatI	WGTACW	6 cut(s)	13, 804, 1014, 1260, 1272, 1473
TauI	GCSGC	1 cut(s)	893
TfiI	GAWTC	2 cut(s)	486, 1255
Tru1I	TTAA	5 cut(s)	602, 756, 764, 1584, 1594
Tru9I	TTAA	5 cut(s)	602, 756, 764, 1584, 1594
TscAI	CASTG	2 cut(s)	76, 1309
TseFI	GTSAC	3 cut(s)	107, 473, 739
TseI	GCWGC	4 cut(s)	260, 273, 575, 1039
Tsp45I	GTSAC	3 cut(s)	107, 473, 739
TspGWI	ACGGA	1 cut(s)	1224
TspRI	CASTG	2 cut(s)	76, 1309
Tth111I	GACNNNGTC	1 cut(s)	584
Van91I	CCANNNNNTGG	1 cut(s)	512
VpaK11BI	GGWCC	3 cut(s)	549, 727, 1416
XagI	CCTNNNNNAGG	1 cut(s)	556
XapI	RAATTY	4 cut(s)	5, 1223, 1230, 1369
XspI	CTAG	6 cut(s)	192, 440, 572, 911, 1062, 1172
ZraI	GACGTC	1 cut(s)	478
ZrmI	AGTACT	3 cut(s)	15, 1016, 1475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.