MD05G1326000.v1.1

Armadillo/beta-catenin-like repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012984
Physical Location & Seq
Forward (+)
45192120 .. 45193889
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1326000.v1.1.491

Sequence Viewer

Length: 1770 bp
ATGAGAGCAACAATGGGGGAAGAAGAGAAGCAGCGAGCCAAAGAAACAGAGCAGAGCCAAAACTCGTCGGAATCTTCCTCCGGTAAATCAAGTCTCCGGCGAATTATCGAGTCCATAACATCTCTGATTTCGCTTTCTTATTCCATCAAAATCTTTTCGGCGAAATGGCAAACGATAAGGACCAAGCTCGAAGATTTGAACTCCGGCCTAGTGGCCGTACAGAACTGCGAGGCCAGCGAAAACCCTGCTGTATCAGGCATTGTGTCGAATACATGGAAGACGGTCAACGAGTGTCACGAGCTCGCTCGTCGCTGCGTCGATCTTTCGTACAGCGGGAAGCTCCTGATGCAGAGCGACTTGGACATGCTTTCCGCAAGACTCGATCTTCACGCAAGAAACCTGTCGGAGGTTTACAACGCCGGCGTTTTGACACGGCGGTTCGCGATCGTCGTTTCGAGGCCCGGCAACGGAGCTTGCAGAGACGACATGAGGTTCTACGTCAGAGACTTGATGACGAGGATGAAGATTGGCGACGCGGAGATGAAACGACAGGCGTTGCTTAATTTGTACGAGGCTGTCGTGGAAGACGACAAGTATGTTAAAGTCGTCGTTGAACATGGCGAGATTGTGCATTTACTGATCCGTTTTCTTGATTTTTCGCATGAGGTTGAAATCCAAGAGTTGTCTGCAAAGATTGTTTCTGTTATTTCTGGGTTTCGTTCGTACAAGGCTGTTCTGGTCGGAGCCGGGATTATCGCGCCGTTGATTCGGGTTTTGGAGAGTGCGAGGGAGGCTGGGAAAGAAGAAGCTGCAAAGAGCTTACAGAGATTAACCGAAAATTCGGATAATGGGTGGTCGATTTCAGCTCACGGCGGAGTCACGGCTTTGCTTAAGTTATGTTCCGGCGGCGATGGCGGCGAAATCAGATCAGAGTTGGTTGGTCCTGCTTGCGGGGCACTCAAAAATCTTGTTGGCATTGAAGAAATCAAGAGATTCATGGTTGAAGGAGGTGTAATTTCGACGTTTATCAGGCTCACAAGGTCGAAAGACGAAGTCTTGCAGATCAATTCGATTGAGTTTCTGCAAAACATCGCTTCTGGGGACGACGCAATTCGGATTATGGTGGCGAAAGAGGGCGGAATTCGAGCGTTAGTTCACGTTTTGGAGCCTCGATCGGTGGCTTGTTCTTGTAAAGTGAGGGAGACGGCATTGAGGGCAATAGAGAATTTGTGTTTTTGGAATGCGAATTCGATTAGTGTTCTGATCAAGTACGGTTTTGTTGATCAGCTCATGTTCTTTCTACGAAATGGGGAGGTTTCGCTTCAAGAACTGGCGCTAAAAGTGGCGATTAGGATGTGTGGGAAGTCAGAGGAGGCCAGAAAGGCGATGGGGGATGCAAATTTCATGACGGAGCTGGTCAACTTCCTCGATTCAAAGTCGTTTGAGGTTCGAGATATGGCGGCTGAGGCGCTGTCGAACATGGTCTCAGTCCCGAAAAATAGAAAACGATTCGTGCAGGATGATCGCAACATGTGCCTCCTTTTGCAGCGGTTCAATCCGGAGCAAGTAAATTCGGGCAACACGAAGCCCTTGTTCTCCATTTTGATGTCGCTGACGAGCTGCAACGGTGGGAGGAAGAAGATTGCGCATTCGGGTTACTTGAAAAACATCCAAAAACTTGCAGAAAATGAAGTTTCGGATGCCAAGAAGCTTGTGAAGAAGCTATCCACAAACAGATTTCGTAGCATGTTGAGTGGAATCTGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

590

Amino Acids

65.47

Weight (kDa)

8.92

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 34 - 142 1.4e-36 Domain of unknown function (DUF7032)
ARM_ARMC5 PF24768 202 - 428 1.2e-09 ARMC5
ARM_PUB PF25598 255 - 472 8.3e-11 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 369 - 569 8.1e-08 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012984)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G61350
fragaria_vesca FvH4_3g03930
malus_domestica MD05G1326000.v1.1 MD10G1303900.v1.1
prunus_persica Prupe.4G037700_v2.0.a1 Prupe.4G037700_v2.0.a1
pyrus_communis pycom05g30020 pycom10g25640
rosa_chinensis RchiOBHm_Chr5g0006221
rosa_laevigata RLG00000031373
rosa_multiflora Rmu_sc0009371.1_g000002
rosa_roxburghii Rroxscaffold_1G00069790
rosa_rugosa Rorug04G0419900
rosa_samantha Rh5AG048300 Rh5BG047100 Rh5CG055800 Rh5DG046700
rosa_wichuraiana Rw5G004810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1647
AccII CGCG 3 cut(s) 443, 536, 758
AccIII TCCGGA 1 cut(s) 1558
AclWI GGATC 1 cut(s) 634
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 6 cut(s) 838, 1140, 1225, 1246, 1399, 1570
AfaI GTAC 5 cut(s) 219, 329, 569, 725, 1271
AfiI CCNNNNNNNGG 3 cut(s) 406, 467, 950
AflII CTTAAG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 1530
AgsI TTSAA 9 cut(s) 199, 614, 671, 980, 1004, 1325, 1434, 1555, 1663
Alw21I GWGCWC 1 cut(s) 303
Alw26I GTCTC 5 cut(s) 98, 474, 498, 1196, 1489
AlwI GGATC 1 cut(s) 634
Aor13HI TCCGGA 1 cut(s) 1558
AoxI GGCC 5 cut(s) 205, 213, 231, 458, 1374
ApeKI GCWGC 5 cut(s) 31, 312, 809, 1546, 1620
ApoI RAATTY 6 cut(s) 838, 1140, 1225, 1246, 1399, 1570
AspLEI GCGC 4 cut(s) 760, 1336, 1471, 1648
AspS9I GGNCC 3 cut(s) 180, 459, 941
AsuC2I CCSGG 2 cut(s) 462, 748
AvaII GGWCC 2 cut(s) 180, 941
BaeGI GKGCMC 1 cut(s) 958
BanII GRGCYC 1 cut(s) 303
BauI CACGAG 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 284, 591
Bbv12I GWGCWC 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 1464
BbvI GCAGC 5 cut(s) 43, 299, 796, 1558, 1607
BccI CCATC 3 cut(s) 152, 905, 1381
BceAI ACGGC 6 cut(s) 200, 449, 745, 886, 897, 1221
BcgI CGANNNNNNTGC 4 cut(s) 227, 261, 1505, 1539
BclI TGATCA 2 cut(s) 1263, 1282
BcnI CCSGG 2 cut(s) 462, 748
BcoDI GTCTC 5 cut(s) 98, 474, 498, 1196, 1489
BfaI CTAG 1 cut(s) 209
BfoI RGCGCY 2 cut(s) 1337, 1472
BfrI CTTAAG 1 cut(s) 890
BglI GCCNNNNNGGC 1 cut(s) 1382
BisI GCNGC 8 cut(s) 32, 313, 810, 907, 916, 1461, 1547, 1621
BlsI GCNGC 8 cut(s) 33, 314, 811, 908, 917, 1462, 1548, 1622
Bme1390I CCNGG 2 cut(s) 462, 748
Bme18I GGWCC 2 cut(s) 180, 941
BmgT120I GGNCC 3 cut(s) 180, 459, 941
BmiI GGNNCC 2 cut(s) 745, 1167
BmrFI CCNGG 2 cut(s) 462, 748
BmsI GCATC 3 cut(s) 336, 1384, 1690
BpiI GAAGAC 2 cut(s) 284, 591
Bpu10I CCTNAGC 1 cut(s) 1464
BpuMI CCSGG 2 cut(s) 462, 748
BsaI GGTCTC 1 cut(s) 1489
BsaWI WCCGGW 2 cut(s) 80, 1558
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 467, 950
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 1335
BseAI TCCGGA 1 cut(s) 1558
BseGI GGATG 6 cut(s) 525, 1359, 1399, 1525, 1668, 1705
BseLI CCNNNNNNNGG 3 cut(s) 406, 467, 950
BseMII CTCAG 2 cut(s) 1455, 1500
BseNI ACTGG 1 cut(s) 1335
BseRI GAGGAG 1 cut(s) 1385
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 5 cut(s) 43, 299, 796, 1558, 1607
BseYI CCCAGC 1 cut(s) 794
BsgI GTGCAG 1 cut(s) 1535
Bsh1236I CGCG 3 cut(s) 443, 536, 758
Bsh1285I CGRYCG 2 cut(s) 447, 1175
BshFI GGCC 5 cut(s) 207, 215, 233, 460, 1376
BsiEI CGRYCG 2 cut(s) 447, 1175
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 8 cut(s) 81, 97, 204, 420, 462, 747, 903, 1559
BslFI GGGAC 2 cut(s) 1115, 1475
BslI CCNNNNNNNGG 3 cut(s) 406, 467, 950
BsmAI GTCTC 5 cut(s) 98, 474, 498, 1196, 1489
BsmBI CGTCTC 2 cut(s) 474, 1196
BsmFI GGGAC 2 cut(s) 1115, 1475
BsmI GAATGC 2 cut(s) 1246, 1648
BsnI GGCC 5 cut(s) 207, 215, 233, 460, 1376
Bso31I GGTCTC 1 cut(s) 1489
Bsp1286I GDGCHC 2 cut(s) 303, 958
Bsp13I TCCGGA 1 cut(s) 1558
Bsp68I TCGCGA 1 cut(s) 443
BspANI GGCC 5 cut(s) 207, 215, 233, 460, 1376
BspCNI CTCAG 2 cut(s) 1456, 1499
BspEI TCCGGA 1 cut(s) 1558
BspFNI CGCG 3 cut(s) 443, 536, 758
BspHI TCATGA 1 cut(s) 1404
BspLI GGNNCC 2 cut(s) 745, 1167
BspPI GGATC 1 cut(s) 634
BspTI CTTAAG 1 cut(s) 890
BspTNI GGTCTC 1 cut(s) 1489
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 1 cut(s) 1335
BssAI RCCGGY 1 cut(s) 419
BssSI CACGAG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 283, 1274, 1628
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 890
BstAPI GCANNNNNTGC 1 cut(s) 1533
BstC8I GCNNGC 6 cut(s) 36, 235, 303, 421, 475, 949
BstDEI CTNAG 2 cut(s) 1464, 1486
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 6 cut(s) 525, 1359, 1399, 1525, 1668, 1705
BstFNI CGCG 3 cut(s) 443, 536, 758
BstH2I RGCGCY 2 cut(s) 1337, 1472
BstHHI GCGC 4 cut(s) 760, 1336, 1471, 1648
BstMAI GTCTC 5 cut(s) 98, 474, 498, 1196, 1489
BstMCI CGRYCG 2 cut(s) 447, 1175
BstNSI RCATGY 3 cut(s) 367, 1534, 1750
BstSCI CCNGG 2 cut(s) 460, 746
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 3 cut(s) 443, 536, 758
BstV1I GCAGC 5 cut(s) 43, 299, 796, 1558, 1607
BstV2I GAAGAC 2 cut(s) 284, 591
BsuRI GGCC 5 cut(s) 207, 215, 233, 460, 1376
BtgZI GCGATG 3 cut(s) 924, 1075, 1400
BtsCI GGATG 6 cut(s) 525, 1359, 1399, 1525, 1668, 1705
BtuMI TCGCGA 1 cut(s) 443
Cac8I GCNNGC 6 cut(s) 36, 235, 303, 421, 475, 949
CciI TCATGA 1 cut(s) 1404
CfoI GCGC 4 cut(s) 760, 1336, 1471, 1648
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 180, 459, 941
CseI GACGC 3 cut(s) 304, 542, 1115
Csp6I GTAC 5 cut(s) 218, 328, 568, 724, 1270
CviQI GTAC 5 cut(s) 218, 328, 568, 724, 1270
DdeI CTNAG 2 cut(s) 1464, 1486
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 2 cut(s) 888, 1152
Ecl136II GAGCTC 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 1489
Eco47I GGWCC 2 cut(s) 180, 941
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoRI GAATTC 2 cut(s) 1140, 1246
EcoT38I GRGCYC 1 cut(s) 303
Esp3I CGTCTC 2 cut(s) 474, 1196
FaqI GGGAC 2 cut(s) 1115, 1475
FauI CCCGC 2 cut(s) 326, 944
FbaI TGATCA 2 cut(s) 1263, 1282
Fnu4HI GCNGC 8 cut(s) 32, 313, 810, 907, 916, 1461, 1547, 1621
FokI GGATG 6 cut(s) 532, 1366, 1406, 1532, 1655, 1712
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 8 cut(s) 32, 313, 810, 907, 916, 1461, 1547, 1621
FspBI CTAG 1 cut(s) 209
FspI TGCGCA 1 cut(s) 1647
GlaI GCGC 4 cut(s) 759, 1335, 1470, 1647
GluI GCNGC 8 cut(s) 32, 313, 810, 907, 916, 1461, 1547, 1621
GsaI CCCAGC 1 cut(s) 798
HaeII RGCGCY 2 cut(s) 1337, 1472
HaeIII GGCC 5 cut(s) 207, 215, 233, 460, 1376
HapII CCGG 8 cut(s) 81, 97, 204, 420, 462, 747, 903, 1559
HgaI GACGC 3 cut(s) 304, 542, 1115
HhaI GCGC 4 cut(s) 760, 1336, 1471, 1648
Hin6I GCGC 4 cut(s) 758, 1334, 1469, 1646
HinP1I GCGC 4 cut(s) 758, 1334, 1469, 1646
HincII GTYRAC 2 cut(s) 286, 1420
HindII GTYRAC 2 cut(s) 286, 1420
HindIII AAGCTT 1 cut(s) 1709
HinfI GANTC 9 cut(s) 71, 110, 378, 766, 876, 993, 1430, 1509, 1758
HpaII CCGG 8 cut(s) 81, 97, 204, 420, 462, 747, 903, 1559
Hpy166II GTNNAC 4 cut(s) 286, 412, 1156, 1420
Hpy8I GTNNAC 4 cut(s) 286, 412, 1156, 1420
Hpy99I CGWCG 8 cut(s) 70, 312, 320, 452, 536, 611, 1024, 1109
HpyAV CCTTC 1 cut(s) 998
HpyCH4III ACNGT 3 cut(s) 283, 1274, 1628
HpyCH4IV ACGT 3 cut(s) 498, 1022, 1158
HpyF3I CTNAG 2 cut(s) 1464, 1486
HpySE526I ACGT 3 cut(s) 498, 1022, 1158
HspAI GCGC 4 cut(s) 758, 1334, 1469, 1646
Kpn2I TCCGGA 1 cut(s) 1558
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Ksp22I TGATCA 2 cut(s) 1263, 1282
LmnI GCTCC 6 cut(s) 345, 470, 743, 1165, 1411, 1561
Lsp1109I GCAGC 5 cut(s) 43, 299, 796, 1558, 1607
LweI GCATC 3 cut(s) 336, 1384, 1690
MaeI CTAG 1 cut(s) 209
MaeII ACGT 3 cut(s) 498, 1022, 1158
MaeIII GTNAC 3 cut(s) 293, 877, 1655
MhlI GDGCHC 2 cut(s) 303, 958
MlyI GAGTC 3 cut(s) 119, 372, 885
MmeI TCCRAC 3 cut(s) 48, 384, 721
MreI CGCCGGCG 1 cut(s) 419
MroI TCCGGA 1 cut(s) 1558
MroNI GCCGGC 1 cut(s) 419
MseI TTAA 4 cut(s) 561, 600, 830, 891
MslI CAYNNNNRTG 1 cut(s) 1604
MspA1I CMGCKG 2 cut(s) 333, 1549
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 8 cut(s) 81, 97, 204, 420, 462, 747, 903, 1559
MspR9I CCNGG 2 cut(s) 462, 748
Mva1269I GAATGC 2 cut(s) 1246, 1648
MvnI CGCG 3 cut(s) 443, 536, 758
NaeI GCCGGC 1 cut(s) 421
NciI CCSGG 2 cut(s) 462, 748
NgoMIV GCCGGC 1 cut(s) 419
NlaIV GGNNCC 2 cut(s) 745, 1167
NmuCI GTSAC 2 cut(s) 293, 877
NruI TCGCGA 1 cut(s) 443
NsbI TGCGCA 1 cut(s) 1647
NspI RCATGY 3 cut(s) 367, 1534, 1750
PagI TCATGA 1 cut(s) 1404
PciI ACATGT 1 cut(s) 1530
PcsI WCGNNNNNNNCGW 5 cut(s) 294, 447, 576, 585, 1580
PctI GAATGC 2 cut(s) 1246, 1648
PdiI GCCGGC 1 cut(s) 421
PfeI GAWTC 6 cut(s) 71, 766, 993, 1430, 1509, 1758
PflFI GACNNNGTC 1 cut(s) 1052
PkrI GCNGC 8 cut(s) 33, 314, 811, 908, 917, 1462, 1548, 1622
Ple19I CGATCG 2 cut(s) 447, 1175
PleI GAGTC 3 cut(s) 118, 372, 884
PpsI GAGTC 3 cut(s) 118, 372, 884
PscI ACATGT 1 cut(s) 1530
Psp124BI GAGCTC 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 794
PspN4I GGNNCC 2 cut(s) 745, 1167
PspPI GGNCC 3 cut(s) 180, 459, 941
PsyI GACNNNGTC 1 cut(s) 1052
PvuI CGATCG 2 cut(s) 447, 1175
RruI TCGCGA 1 cut(s) 443
RsaI GTAC 5 cut(s) 219, 329, 569, 725, 1271
RsaNI GTAC 5 cut(s) 218, 328, 568, 724, 1270
RseI CAYNNNNRTG 1 cut(s) 1604
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 4 cut(s) 561, 600, 830, 891
SatI GCNGC 8 cut(s) 32, 313, 810, 907, 916, 1461, 1547, 1621
Sau96I GGNCC 3 cut(s) 180, 459, 941
SchI GAGTC 3 cut(s) 119, 372, 885
ScrFI CCNGG 2 cut(s) 462, 748
SduI GDGCHC 2 cut(s) 303, 958
SfaNI GCATC 3 cut(s) 336, 1384, 1690
SgrAI CRCCGGYG 1 cut(s) 419
SinI GGWCC 2 cut(s) 180, 941
SmiMI CAYNNNNRTG 1 cut(s) 1604
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
SspMI CTAG 1 cut(s) 209
SstI GAGCTC 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 460, 746
TaaI ACNGT 3 cut(s) 283, 1274, 1628
TaiI ACGT 3 cut(s) 501, 1025, 1161
TauI GCSGC 3 cut(s) 909, 918, 1463
TfiI GAWTC 6 cut(s) 71, 766, 993, 1430, 1509, 1758
Tru1I TTAA 4 cut(s) 561, 600, 830, 891
Tru9I TTAA 4 cut(s) 561, 600, 830, 891
TseFI GTSAC 2 cut(s) 293, 877
TseI GCWGC 5 cut(s) 31, 312, 809, 1546, 1620
Tsp45I GTSAC 2 cut(s) 293, 877
TspDTI ATGAA 5 cut(s) 536, 557, 985, 1393, 1704
TspGWI ACGGA 3 cut(s) 483, 632, 1424
Tth111I GACNNNGTC 1 cut(s) 1052
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 2 cut(s) 180, 941
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 6 cut(s) 838, 1140, 1225, 1246, 1399, 1570
XceI RCATGY 3 cut(s) 367, 1534, 1750
XcmI CCANNNNNNNNNTGG 1 cut(s) 1384
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.