MD10G1303900.v1.1

Armadillo/beta-catenin-like repeats

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
39019423 .. 39022020
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1303900.v1.1.491

Sequence Viewer

Length: 1770 bp
ATGAGAGCAACTATGGGGAAAGAAAAGAAGCAGGGAGCCAAAGAAACAGAGCAGAGCCAAAACTCGTCGGAATCTTCCTCCGGCGAATCAAGTCTCCGGCGAACTATCGAGTCCATTACATCTCTGATTTCACTGTCTTATTCCATCAAAATATTTGCGGCGAAATGGAAGACGATAAGGACCAAGCTCGAAGATTTGAACTCCGGCCTAGAGGCCGTAGAAAACTGCGAGGCCAGCGAAAACGCAGTTCTCTCAGGCATTGTGTCGGGCGTATGTCAGACGGTCAACGAGTGCCACGAAATCGCGCGTCGCTGCGTCGATCTTTCGTACAGCGGGAAGCTCCTGATGCAGAGCGACTTGGACATTCTCTCAGCAAGACTCGATCTTCACGCAAGAAACCTCTCGGAGGTTTACAACGCCGGCGTTTTGACACGGAGGTTCGCGATTGTCGTTTCGAGGCCCGGAAACGGAGCTTGCAGAGATGACATGAGGTTCTACGTCAGAGACGTGATGACGAGGATGAAGATTGGCAACGCAGAGATGAAACGCCAGGCGTTGCTTAATCTGCACGAGGCTTTGGTGGAAGACGACAAGTATGTTAAAGTCGTCGTTGAGCACAGTGAGATTGTGCATGTATTGGCTAGTTTTCTTGATTTTTCGCATGATGTTCAAATCCAGGAGTTGTCTGCAAAGATTGTTTCTGTGATTTCTGGGTTTGGTTCGTGCAAGGTTGTTCTGATCGGAGCCGGGATTATCGCGCCGTTGATTCAGGTTTTGGAGTGTGGGAGTGTGGTTGGGAAAGAAGAAGCTGCAAAGAGCTTGCAGAGATTAACGGAAAATTCGGATAATGGGTGGTCTATTTCAGCTCACGGCGGAGTCACAGCTCTGCTTAAGTTATGTTCCGGCGGCGATGGCAGCGAGATCAGAGCAGAGTTGGTCGGTCCTGCTTGCGGGGCACTCAAAAATCTCGTTGGCATTGAAGAAATCAAGAGATTCATGGTCGAAGAAGGTGTTATTTCGACGTTTATCGGGCTCACAAGGTCGAAAGATGAAGTCTTGCAGGTCAATTCGATTGAGTTTCTGCAAAACATTGCTTCTGGGGATGAGGCAATTCGGGTTATGGTGGCGAAAGAGGGCGGAATTCAAGCGTTGGTTCGCGTTTTGGCTACCCGATCGGCGGCTTGTTCTTGTAAAGTGAGGGAGACAGCATTGAGGGCAATTGAGAATTTGTGTTTTCGCAATGCGAATTCGATTAGTCTTCTGATCAAGTACGGTTTTGTTGATCAGCTCATGTTCTTTCTCCAAAATGGGGAGGTTTCGATTCAAGAACTGGCGCTAAAAGTGTCGATTAGAATGTGTGGGAAATCAGAGGAGGCCAAGAAGGCAATGGGGGATGCAAACTTCATGACGGAGCTGGTTAAGTTTCTTGATTCCAAGTCGTTTGAGGTTCGAGAAATGGCGGCTGAAGCGCTGTCGAACATGGTCACAGTCCCGAAAAACAGAAAACGATTCGTGCAGGATGATCGCAACATGTGCCTCCTCTTGCAGCGGTTCGATCCGAAGCAAGTGAATTCGGGCAACAAAAAGCTCTTGTTCTCCATTTTGATGTCGCTGACGAGCTGCAATAGCGGGAGGAGGAAGATTGCGCATTCGGGTTACATGAAAAACATCGAAAAACTAGCAGAAGATGAAGTTTCAGATGCCAAGAAGCTTGTGAAGAAGCTATCCACAAACAGATTTCGTAGCATGTTGAGTGGAATCTGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

590

Amino Acids

64.85

Weight (kDa)

8.59

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7032 PF23005 34 - 142 1.1e-36 Domain of unknown function (DUF7032)
ARM_PUB PF25598 275 - 474 1.6e-08 Plant U-box protein ARM repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012984)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1647
Acc36I ACCTGC 1 cut(s) 1051
AccII CGCG 5 cut(s) 305, 307, 443, 758, 1158
AclWI GGATC 1 cut(s) 1550
AcsI RAATTY 5 cut(s) 838, 1140, 1225, 1246, 1570
AcuI CTGAAG 1 cut(s) 1485
AfaI GTAC 2 cut(s) 329, 1271
AfeI AGCGCT 1 cut(s) 1470
AfiI CCNNNNNNNGG 5 cut(s) 406, 467, 950, 1177, 1309
AflII CTTAAG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 1530
AgsI TTSAA 5 cut(s) 199, 671, 980, 1145, 1325
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 2 cut(s) 549, 675
Alw21I GWGCWC 1 cut(s) 618
Alw26I GTCTC 3 cut(s) 98, 498, 1196
AlwI GGATC 1 cut(s) 1550
Aor51HI AGCGCT 1 cut(s) 1470
AoxI GGCC 5 cut(s) 205, 213, 231, 458, 1374
ApeKI GCWGC 5 cut(s) 312, 809, 915, 1546, 1620
ApoI RAATTY 5 cut(s) 838, 1140, 1225, 1246, 1570
AspLEI GCGC 5 cut(s) 307, 760, 1336, 1471, 1648
AspS9I GGNCC 3 cut(s) 180, 459, 941
AsuC2I CCSGG 2 cut(s) 462, 748
AvaII GGWCC 2 cut(s) 180, 941
BaeGI GKGCMC 1 cut(s) 958
BanII GRGCYC 1 cut(s) 1035
BauI CACGAG 1 cut(s) 569
BbsI GAAGAC 3 cut(s) 176, 591, 1250
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 5 cut(s) 299, 796, 927, 1558, 1607
BccI CCATC 2 cut(s) 152, 905
BceAI ACGGC 3 cut(s) 200, 745, 886
BcgI CGANNNNNNTGC 2 cut(s) 1505, 1539
BciT130I CCWGG 2 cut(s) 551, 677
BclI TGATCA 2 cut(s) 1263, 1282
BcnI CCSGG 2 cut(s) 462, 748
BcoDI GTCTC 3 cut(s) 98, 498, 1196
BfaI CTAG 3 cut(s) 209, 642, 1679
BfoI RGCGCY 2 cut(s) 1337, 1472
BfrI CTTAAG 1 cut(s) 890
BfuAI ACCTGC 1 cut(s) 1051
BglI GCCNNNNNGGC 1 cut(s) 1382
BisI GCNGC 9 cut(s) 159, 313, 810, 907, 916, 1179, 1461, 1547, 1621
BlsI GCNGC 9 cut(s) 160, 314, 811, 908, 917, 1180, 1462, 1548, 1622
Bme1390I CCNGG 4 cut(s) 462, 551, 677, 748
Bme18I GGWCC 2 cut(s) 180, 941
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 180, 459, 941
BmiI GGNNCC 2 cut(s) 37, 745
BmrFI CCNGG 4 cut(s) 462, 551, 677, 748
BmsI GCATC 3 cut(s) 336, 1384, 1690
BpiI GAAGAC 3 cut(s) 176, 591, 1250
BpuMI CCSGG 2 cut(s) 462, 748
Bsc4I CCNNNNNNNGG 5 cut(s) 406, 467, 950, 1177, 1309
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 1335
Bse3DI GCAATG 3 cut(s) 1089, 1246, 1392
BseBI CCWGG 2 cut(s) 551, 677
BseGI GGATG 4 cut(s) 525, 1108, 1399, 1525
BseLI CCNNNNNNNGG 5 cut(s) 406, 467, 950, 1177, 1309
BseMI GCAATG 3 cut(s) 1089, 1246, 1392
BseMII CTCAG 2 cut(s) 267, 384
BseNI ACTGG 1 cut(s) 1335
BseRI GAGGAG 3 cut(s) 1385, 1529, 1648
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 5 cut(s) 299, 796, 927, 1558, 1607
BsgI GTGCAG 2 cut(s) 551, 1535
Bsh1236I CGCG 5 cut(s) 305, 307, 443, 758, 1158
Bsh1285I CGRYCG 1 cut(s) 1175
BshFI GGCC 5 cut(s) 207, 215, 233, 460, 1376
BsiEI CGRYCG 1 cut(s) 1175
BsiHKAI GWGCWC 1 cut(s) 618
BsiSI CCGG 7 cut(s) 81, 97, 204, 420, 462, 747, 903
BslFI GGGAC 1 cut(s) 1475
BslI CCNNNNNNNGG 5 cut(s) 406, 467, 950, 1177, 1309
BsmAI GTCTC 3 cut(s) 98, 498, 1196
BsmBI CGTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 1475
BsmI GAATGC 1 cut(s) 1648
BsnI GGCC 5 cut(s) 207, 215, 233, 460, 1376
Bsp1286I GDGCHC 3 cut(s) 618, 958, 1035
Bsp143I GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
Bsp68I TCGCGA 1 cut(s) 443
BspANI GGCC 5 cut(s) 207, 215, 233, 460, 1376
BspCNI CTCAG 2 cut(s) 266, 383
BspFNI CGCG 5 cut(s) 305, 307, 443, 758, 1158
BspHI TCATGA 1 cut(s) 1404
BspLI GGNNCC 2 cut(s) 37, 745
BspMI ACCTGC 1 cut(s) 1051
BspPI GGATC 1 cut(s) 1550
BspTI CTTAAG 1 cut(s) 890
BsrDI GCAATG 3 cut(s) 1089, 1246, 1392
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 1 cut(s) 1335
BssAI RCCGGY 1 cut(s) 419
BssMI GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
BssSI CACGAG 1 cut(s) 569
Bst2BI CACGAG 1 cut(s) 569
Bst2UI CCWGG 2 cut(s) 551, 677
Bst4CI ACNGT 5 cut(s) 135, 283, 620, 1274, 1489
BstAFI CTTAAG 1 cut(s) 890
BstAPI GCANNNNNTGC 1 cut(s) 1533
BstC8I GCNNGC 5 cut(s) 235, 421, 475, 821, 949
BstDEI CTNAG 2 cut(s) 253, 370
BstENI CCTNNNNNAGG 1 cut(s) 404
BstF5I GGATG 4 cut(s) 525, 1108, 1399, 1525
BstFNI CGCG 5 cut(s) 305, 307, 443, 758, 1158
BstH2I RGCGCY 2 cut(s) 1337, 1472
BstHHI GCGC 5 cut(s) 307, 760, 1336, 1471, 1648
BstKTI GATC 9 cut(s) 322, 385, 741, 924, 1175, 1266, 1285, 1525, 1558
BstMAI GTCTC 3 cut(s) 98, 498, 1196
BstMBI GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
BstMCI CGRYCG 1 cut(s) 1175
BstNI CCWGG 2 cut(s) 551, 677
BstNSI RCATGY 3 cut(s) 635, 1534, 1750
BstSCI CCNGG 4 cut(s) 460, 549, 675, 746
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 5 cut(s) 305, 307, 443, 758, 1158
BstV1I GCAGC 5 cut(s) 299, 796, 927, 1558, 1607
BstV2I GAAGAC 3 cut(s) 176, 591, 1250
BsuRI GGCC 5 cut(s) 207, 215, 233, 460, 1376
BtgZI GCGATG 1 cut(s) 924
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 4 cut(s) 525, 1108, 1399, 1525
BtsIMutI CAGTG 2 cut(s) 131, 625
BtuMI TCGCGA 1 cut(s) 443
BveI ACCTGC 1 cut(s) 1051
Cac8I GCNNGC 5 cut(s) 235, 421, 475, 821, 949
CciI TCATGA 1 cut(s) 1404
CfoI GCGC 5 cut(s) 307, 760, 1336, 1471, 1648
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 3 cut(s) 180, 459, 941
CseI GACGC 2 cut(s) 296, 304
Csp6I GTAC 2 cut(s) 328, 1270
CviQI GTAC 2 cut(s) 328, 1270
DdeI CTNAG 2 cut(s) 253, 370
DpnI GATC 9 cut(s) 321, 384, 740, 923, 1174, 1265, 1284, 1524, 1557
DpnII GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
EciI GGCGGA 2 cut(s) 888, 1152
Eco24I GRGCYC 1 cut(s) 1035
Eco47I GGWCC 2 cut(s) 180, 941
Eco47III AGCGCT 1 cut(s) 1470
Eco57I CTGAAG 1 cut(s) 1485
EcoNI CCTNNNNNAGG 1 cut(s) 404
EcoRI GAATTC 3 cut(s) 1140, 1246, 1570
EcoRII CCWGG 2 cut(s) 549, 675
EcoT38I GRGCYC 1 cut(s) 1035
Esp3I CGTCTC 1 cut(s) 498
FaqI GGGAC 1 cut(s) 1475
FauI CCCGC 3 cut(s) 326, 944, 1622
FbaI TGATCA 2 cut(s) 1263, 1282
Fnu4HI GCNGC 9 cut(s) 159, 313, 810, 907, 916, 1179, 1461, 1547, 1621
FokI GGATG 4 cut(s) 532, 1115, 1406, 1532
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 9 cut(s) 159, 313, 810, 907, 916, 1179, 1461, 1547, 1621
FspBI CTAG 3 cut(s) 209, 642, 1679
FspI TGCGCA 1 cut(s) 1647
GlaI GCGC 5 cut(s) 306, 759, 1335, 1470, 1647
GluI GCNGC 9 cut(s) 159, 313, 810, 907, 916, 1179, 1461, 1547, 1621
HaeII RGCGCY 2 cut(s) 1337, 1472
HaeIII GGCC 5 cut(s) 207, 215, 233, 460, 1376
HapII CCGG 7 cut(s) 81, 97, 204, 420, 462, 747, 903
HgaI GACGC 2 cut(s) 296, 304
HhaI GCGC 5 cut(s) 307, 760, 1336, 1471, 1648
Hin6I GCGC 5 cut(s) 305, 758, 1334, 1469, 1646
HinP1I GCGC 5 cut(s) 305, 758, 1334, 1469, 1646
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 1709
HpaII CCGG 7 cut(s) 81, 97, 204, 420, 462, 747, 903
Hpy166II GTNNAC 2 cut(s) 286, 412
Hpy188III TCNNGA 9 cut(s) 343, 442, 650, 988, 1325, 1405, 1427, 1451, 1492
Hpy8I GTNNAC 2 cut(s) 286, 412
Hpy99I CGWCG 5 cut(s) 70, 312, 320, 611, 1024
HpyAV CCTTC 2 cut(s) 1001, 1375
HpyCH4III ACNGT 5 cut(s) 135, 283, 620, 1274, 1489
HpyCH4IV ACGT 3 cut(s) 498, 507, 1022
HpyF3I CTNAG 2 cut(s) 253, 370
HpySE526I ACGT 3 cut(s) 498, 507, 1022
HspAI GCGC 5 cut(s) 305, 758, 1334, 1469, 1646
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Ksp22I TGATCA 2 cut(s) 1263, 1282
Kzo9I GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
LmnI GCTCC 5 cut(s) 35, 345, 470, 743, 1411
Lsp1109I GCAGC 5 cut(s) 299, 796, 927, 1558, 1607
LweI GCATC 3 cut(s) 336, 1384, 1690
MaeI CTAG 3 cut(s) 209, 642, 1679
MaeII ACGT 3 cut(s) 498, 507, 1022
MaeIII GTNAC 3 cut(s) 877, 1483, 1655
MalI GATC 9 cut(s) 321, 384, 740, 923, 1174, 1265, 1284, 1524, 1557
MboI GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
MfeI CAATTG 1 cut(s) 1218
MhlI GDGCHC 3 cut(s) 618, 958, 1035
MluCI AATT 8 cut(s) 838, 1066, 1110, 1140, 1218, 1225, 1246, 1570
MlyI GAGTC 3 cut(s) 119, 372, 885
MmeI TCCRAC 1 cut(s) 48
MreI CGCCGGCG 1 cut(s) 419
MroNI GCCGGC 1 cut(s) 419
MseI TTAA 6 cut(s) 561, 600, 830, 891, 1419, 1768
MslI CAYNNNNRTG 1 cut(s) 1604
MspA1I CMGCKG 2 cut(s) 333, 1549
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 7 cut(s) 81, 97, 204, 420, 462, 747, 903
MspR9I CCNGG 4 cut(s) 462, 551, 677, 748
MunI CAATTG 1 cut(s) 1218
Mva1269I GAATGC 1 cut(s) 1648
MvaI CCWGG 2 cut(s) 551, 677
MvnI CGCG 5 cut(s) 305, 307, 443, 758, 1158
NaeI GCCGGC 1 cut(s) 421
NciI CCSGG 2 cut(s) 462, 748
NdeII GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
NgoMIV GCCGGC 1 cut(s) 419
NlaIV GGNNCC 2 cut(s) 37, 745
NmuCI GTSAC 2 cut(s) 877, 1483
NruI TCGCGA 1 cut(s) 443
NsbI TGCGCA 1 cut(s) 1647
NspI RCATGY 3 cut(s) 635, 1534, 1750
PagI TCATGA 1 cut(s) 1404
PciI ACATGT 1 cut(s) 1530
PcsI WCGNNNNNNNCGW 3 cut(s) 294, 447, 504
PctI GAATGC 1 cut(s) 1648
PdiI GCCGGC 1 cut(s) 421
PfeI GAWTC 8 cut(s) 71, 86, 766, 993, 1321, 1430, 1509, 1758
PfoI TCCNGGA 1 cut(s) 675
PkrI GCNGC 9 cut(s) 160, 314, 811, 908, 917, 1180, 1462, 1548, 1622
Ple19I CGATCG 1 cut(s) 1175
PleI GAGTC 3 cut(s) 118, 372, 884
PpsI GAGTC 3 cut(s) 118, 372, 884
PscI ACATGT 1 cut(s) 1530
Psp6I CCWGG 2 cut(s) 549, 675
PspGI CCWGG 2 cut(s) 549, 675
PspN4I GGNNCC 2 cut(s) 37, 745
PspPI GGNCC 3 cut(s) 180, 459, 941
PvuI CGATCG 1 cut(s) 1175
RruI TCGCGA 1 cut(s) 443
RsaI GTAC 2 cut(s) 329, 1271
RsaNI GTAC 2 cut(s) 328, 1270
RseI CAYNNNNRTG 1 cut(s) 1604
SaqAI TTAA 6 cut(s) 561, 600, 830, 891, 1419, 1768
SatI GCNGC 9 cut(s) 159, 313, 810, 907, 916, 1179, 1461, 1547, 1621
Sau3AI GATC 9 cut(s) 319, 382, 738, 921, 1172, 1263, 1282, 1522, 1555
Sau96I GGNCC 3 cut(s) 180, 459, 941
SchI GAGTC 3 cut(s) 119, 372, 885
ScrFI CCNGG 4 cut(s) 462, 551, 677, 748
SduI GDGCHC 3 cut(s) 618, 958, 1035
SfaNI GCATC 3 cut(s) 336, 1384, 1690
SgrAI CRCCGGYG 1 cut(s) 419
SinI GGWCC 2 cut(s) 180, 941
SmiMI CAYNNNNRTG 1 cut(s) 1604
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 8 cut(s) 838, 1066, 1110, 1140, 1218, 1225, 1246, 1570
SspI AATATT 1 cut(s) 153
SspMI CTAG 3 cut(s) 209, 642, 1679
StyD4I CCNGG 4 cut(s) 460, 549, 675, 746
TaaI ACNGT 5 cut(s) 135, 283, 620, 1274, 1489
TaiI ACGT 3 cut(s) 501, 510, 1025
TaqII GACCGA 1 cut(s) 929
TasI AATT 8 cut(s) 838, 1066, 1110, 1140, 1218, 1225, 1246, 1570
TauI GCSGC 4 cut(s) 161, 909, 1181, 1463
TfiI GAWTC 8 cut(s) 71, 86, 766, 993, 1321, 1430, 1509, 1758
Tru1I TTAA 6 cut(s) 561, 600, 830, 891, 1419, 1768
Tru9I TTAA 6 cut(s) 561, 600, 830, 891, 1419, 1768
TscAI CASTG 2 cut(s) 138, 625
TseFI GTSAC 2 cut(s) 877, 1483
TseI GCWGC 5 cut(s) 312, 809, 915, 1546, 1620
Tsp45I GTSAC 2 cut(s) 877, 1483
TspDTI ATGAA 7 cut(s) 536, 557, 985, 1065, 1393, 1676, 1704
TspGWI ACGGA 4 cut(s) 448, 483, 848, 1424
TspRI CASTG 2 cut(s) 138, 625
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 2 cut(s) 180, 941
XagI CCTNNNNNAGG 1 cut(s) 404
XapI RAATTY 5 cut(s) 838, 1140, 1225, 1246, 1570
XceI RCATGY 3 cut(s) 635, 1534, 1750
XcmI CCANNNNNNNNNTGG 1 cut(s) 1384
XspI CTAG 3 cut(s) 209, 642, 1679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.