Rorug04G0419900

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005457
Physical Location & Seq
Forward (+)
58049317 .. 58055605
6289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0419900.1

Sequence Viewer

Length: 3009 bp
ATGGGTGGGAATTTGAAGATGCAGAGCCACCACTCTGTGGCTGTGAGGCTGAATGAGCAAATGGGGGCCAAAAAGGGCTTCACTTTTATTCAGGCCTACAGAGCTTGGTTCCCAAAGCTTTTGATGCTTTGGATTCTGGTGATGGCATATTTGAGCTTGTCAATCTACAATTACATGGATGCTGATAACAAAGTGAGAAGGGTGGAAGTGCTTAGTAGCATGTGTGATCAGAGAGCAAGAATGTTGCAAGATCAGTTCAATGTTAGTGTTAATCATGTGCATGCCCTGGCCATCCTTGTTTCAACATTTCATTACCTCAAGAACCCATCAGCAATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCCTTCGAGAGGCCTCTATTAAGTGGGGTGGCCTATGCACAAAGAGTTGTTAATTCGGAGAGGGAAAGTTTCGAAAGGCAAAATGGCTGGATGATAAAGACGATGGAGAGGGAGCCCTCACCCATCCGAGATGAGTATGCACCTGTAATTTTCTCGCAGGAAACCGTCTCTTACATTGAGTCAATTGACATGATGTCTGGGGAGGAGGACAGAGAAAACATTTTAAGGGCTAGGGCTACTGGAAAAGCAGTTCTGACCAGTCCATTCAGGCTGCTCGGTTCACATCATCTTGGTGTTGTGCTGACTTTCCCTGTTTACAAATCCAAGCTCTCTCCAAACCCAACTGTGGAGGAGCGCATAAAAGCAGCTTCCGGGTACCTTGGTGGAGCCTTTGATGTTGAGTCCCTTGTAGAGAATTTACTTGGGCAACTTGCTGGGAATCAGGCCATTATGGTTTATGTATATGATGTCACAAAATCTTCTGATCCCCTAATCATGTATGGTCACCAATATCATCAAGATGGTGACACGTCTCTTCTGCATGAAAGTAAGCTTGATTTTGGGGATCCCTTCAGAAAGCATCAGATGATATGTAGATATCATCACAAGGCACCGACATCATGGACAGCAATTAACACTGCATTCTTATTCTTTGTGATTGGTTTATTAGTTGGGTATATCTTATATGGAGCTGCAATGCACATTGTCAAAGTCGAGGATGATTTCCGTGAAATGGAAGAATTAAAAGTTCGAGCAGAAGCTGCTGATGTTGCCAAGTCCCAGTTTCTTGCTACTGTTTCCCATGAAATTCGAACACCCATGAATGGAATCCTTGGAATGCTTGCCTTGCTTCTAGATACAGCTTTAAGTGGAACCCAGAGGGATTATGCTCAAACTGCTCAGGCCTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTGCTTGACCGGGCAAAAATTGAAGCTGGAAGGTTGGAGCTGGAACAAGTTCCATTTGGCATTCGATCTATACTAGATGATGTCCTTTCTTTATTTTCTGAAAAGTCTAGAAATATGGGTATAGAGCTTGCAGTATTTGTTTCCGATAAAGTTCCAGAAATTTTTATCGGTGATCCCGGGAGATTCAGACAAATCATTACAAATCTTGTGGGCAACTCTATTAAATTCACAGAACGAGGACATATATTTGTCAAAGTCCATCTAGCTGAGCCCTCGAAGGCCATGATTAATGGGAAATCAATGACTTACTTGAACGGAGGATCAGATGAAGGTGTAAAAACATCTGATGGTCGTCAGTTTAAGACGTTAAGTGGATGTGAAGCAGCTGATGATCAGAATAGTTGGGATACTTTTAAGCATCTAATTGCTAATGAAGAACATAGAACTGATGTTTCAAGTAATGTTGCAGCCAATAATGAGGCTTCTGGACATATCACTTTGATGGTATCTGTGGAAGATACAGGAATTGGTATACCATTATGTGCCCAAGAACGAGTATTTATGCCCTTCATGCAGGCAGACAGTTCAACCTCTAGACATTATGGAGGCACTGGTATCGGCTTGAGCATCAGTAAGTGTCTAGTTGAACTGATGGGTGGTCAGATAAACTTCACAAGTCGACCTCATGTTGGGAGCACATTTTCGTTCACGGCTAATTTTGGGAGGTGCAAAGAAAATGTAGTTAGTGACTTGAAAAAACCTAAGTTGGAAGATCTACCTTCTAACTTTAGAGGATTGAGATCGATACTAGTTGATGGAAAACTTGTGAGAGCTGCTGTAACAAAATACCACTTGAAGAGACTTGGAATCTTGGTAGAAGTTGTAAGTAGCATAAAGATGGCTGTTGCTTTTTGTGGAAGAAATGGTTCTGCGACATCTGGAAATATTGTCCCTCCAGATATAATTCTAGTAGAAAAGGATGCATGGATTTCTGGTGAAGAATGTGATCTCAACATACAGCAATTGGAATGGAAACAGAATGGGCATATATATAAGCTGCCTAAGATGATCCTTCTTGCAACCAATTTCGGTGAAGGTGAATTTGATAAGGCAAAGGCAGCTGGTTTTACAGATACCGTGATTATGAAACCTTTGAGGGCTAGTATGGTAGCTGCATGTCTTCAACAGGTGCTTGGCATAGGGAAGAAGAGGCAACAGGGGAAGGAGCTGCCTAATGGATCTAATTTCCTTCAAAGCCTGCTCTCTGGTAAAAAAATCTTGGTGGTTGATGACAATATGGTAAACAGAAGAGTTGCTGCAGGTGCATTAAAAAAGTTCAGAGCTGATGTAGTGTGTGTTGACAGTGGCAAAGCTGCATTGCATTTGCTTCAAATACCACACAACTTTGATGCTTGTTTCATGGATATTCAAATGCCTGAAATGGATGGTTTTGAGGCAACTCGTAGAATTCGGCAGATGGAGAGCAAGGCAAATGGGGAGATAAATGGTGGATTGGAAGGAGTTGCAAGAAAGGGTGAGTGGCATTTGCCAGTATTAGCTATGACCGCTGATGTTATCCATGCCACTTATGATGAGTGCCTAAAATGTGGTATGGATGGATATGTCTCAAAGCCATTTGAGGAAGAGAATCTGTATCAAGCCGTGGCGAAGTTCTTCAAATCTAAACCAGAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
cwf18

Protein Analysis

1002

Amino Acids

111.25

Weight (kDa)

6.66

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 111 - 291 1.1e-37 CHASE domain
HisKA PF00512 382 - 447 1e-19 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 602 - 675 1.4e-16 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Receiver_CRE1 PF24896 697 - 836 6.4e-54 AHK4/CRE1/WOL first receiver domain
Response_reg PF00072 863 - 932 1.5e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2621
Acc36I ACCTGC 1 cut(s) 2621
Acc65I GGTACC 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 747, 982
AccB7I CCANNNNNTGG 1 cut(s) 37
AccI GTMKAC 2 cut(s) 1843, 1990
AciI CCGC 1 cut(s) 2877
AclWI GGATC 7 cut(s) 851, 932, 945, 1478, 1639, 2374, 2557
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 7 cut(s) 10, 787, 1179, 1470, 1535, 2411, 2778
AcuI CTGAAG 1 cut(s) 928
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 1 cut(s) 749
AfiI CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 2000
AflIII ACRYGT 1 cut(s) 900
AhdI GACNNNNNGTC 1 cut(s) 565
AhlI ACTAGT 1 cut(s) 2119
AjiI CACGTC 1 cut(s) 903
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 606, 638
Alw21I GWGCWC 1 cut(s) 2009
Alw26I GTCTC 4 cut(s) 544, 909, 2164, 2941
AlwI GGATC 7 cut(s) 851, 932, 945, 1478, 1639, 2374, 2557
AlwNI CAGNNNCTG 1 cut(s) 1133
Ama87I CYCGRG 1 cut(s) 1487
AoxI GGCC 8 cut(s) 66, 93, 288, 383, 402, 816, 1275, 1590
ApoI RAATTY 7 cut(s) 10, 787, 1179, 1470, 1535, 2411, 2778
AseI ATTAAT 2 cut(s) 1301, 1599
Asp700I GAANNNNTTC 3 cut(s) 1359, 2236, 2984
Asp718I GGTACC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 729
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 4 cut(s) 745, 1322, 1488, 1489
AsuHPI GGTGA 9 cut(s) 151, 483, 869, 908, 1493, 2318, 2414, 2420, 2858
AsuII TTCGAA 2 cut(s) 444, 1183
AvaI CYCGRG 1 cut(s) 1487
BaeGI GKGCMC 1 cut(s) 1858
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 937
BanI GGYRCC 2 cut(s) 747, 982
BanII GRGCYC 2 cut(s) 489, 1584
BbsI GAAGAC 1 cut(s) 2483
Bbv12I GWGCWC 1 cut(s) 2009
BceAI ACGGC 2 cut(s) 2037, 2957
BcgI CGANNNNNNTGC 2 cut(s) 1909, 1943
BciT130I CCWGG 1 cut(s) 287
BciVI GTATCC 1 cut(s) 1711
BclI TGATCA 3 cut(s) 226, 337, 1702
BcnI CCSGG 4 cut(s) 745, 1322, 1488, 1489
BcoDI GTCTC 4 cut(s) 544, 909, 2164, 2941
BcuI ACTAGT 1 cut(s) 2119
BfmI CTRYAG 2 cut(s) 97, 2628
BfuAI ACCTGC 1 cut(s) 2621
BfuI GTATCC 1 cut(s) 1711
BglII AGATCT 1 cut(s) 2083
BlpI GCTNAGC 1 cut(s) 1578
Bme1390I CCNGG 5 cut(s) 287, 745, 1322, 1488, 1489
BmeRI GACNNNNNGTC 1 cut(s) 565
BmeT110I CYCGRG 1 cut(s) 1487
BmgBI CACGTC 1 cut(s) 903
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
BmrFI CCNGG 5 cut(s) 287, 745, 1322, 1488, 1489
BmrI ACTGGG 1 cut(s) 1147
BmsI GCATC 8 cut(s) 9, 114, 169, 961, 1738, 1947, 2281, 2710
BmuI ACTGGG 1 cut(s) 1147
BpiI GAAGAC 1 cut(s) 2483
BpmI CTGGAG 1 cut(s) 2250
Bpu10I CCTNAGC 1 cut(s) 1272
Bpu1102I GCTNAGC 1 cut(s) 1578
Bpu14I TTCGAA 2 cut(s) 444, 1183
BpuEI CTTGAG 2 cut(s) 302, 1954
BpuMI CCSGG 4 cut(s) 745, 1322, 1488, 1489
Bsa29I ATCGAT 1 cut(s) 2114
BsaBI GATNNNNATC 1 cut(s) 2110
BsaJI CCNNGG 5 cut(s) 285, 751, 1204, 1487, 2973
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 2000
Bse1I ACTGG 5 cut(s) 616, 630, 1153, 1927, 2861
Bse3DI GCAATG 2 cut(s) 1074, 2687
Bse8I GATNNNNATC 1 cut(s) 2110
BseBI CCWGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 2114
BseDI CCNNGG 5 cut(s) 285, 751, 1204, 1487, 2973
BseGI GGATG 9 cut(s) 184, 291, 468, 495, 1096, 1691, 2296, 2761, 2932
BseJI GATNNNNATC 1 cut(s) 2110
BseLI CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 2000
BseMI GCAATG 2 cut(s) 1074, 2687
BseMII CTCAG 2 cut(s) 1286, 1569
BseNI ACTGG 5 cut(s) 616, 630, 1153, 1927, 2861
BseRI GAGGAG 2 cut(s) 590, 737
BseSI GKGCMC 1 cut(s) 1858
BseYI CCCAGC 1 cut(s) 806
BshFI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1592
BshNI GGYRCC 2 cut(s) 747, 982
BshVI ATCGAT 1 cut(s) 2114
BsiHKAI GWGCWC 1 cut(s) 2009
BsiHKCI CYCGRG 1 cut(s) 1487
BsiSI CCGG 3 cut(s) 744, 1321, 1488
BslFI GGGAC 3 cut(s) 760, 1135, 2246
BslI CCNNNNNNNGG 6 cut(s) 37, 381, 718, 1105, 1196, 2000
BsmAI GTCTC 4 cut(s) 544, 909, 2164, 2941
BsmBI CGTCTC 2 cut(s) 544, 909
BsmFI GGGAC 3 cut(s) 760, 1135, 2246
BsmI GAATGC 3 cut(s) 1013, 1215, 1371
BsnI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1592
BsoBI CYCGRG 1 cut(s) 1487
Bsp119I TTCGAA 2 cut(s) 444, 1183
Bsp1286I GDGCHC 4 cut(s) 489, 1584, 1858, 2009
Bsp1720I GCTNAGC 1 cut(s) 1578
BspACI CCGC 1 cut(s) 2877
BspANI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1592
BspCNI CTCAG 2 cut(s) 1285, 1570
BspDI ATCGAT 1 cut(s) 2114
BspLI GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
BspMAI CTGCAG 1 cut(s) 2632
BspMI ACCTGC 1 cut(s) 2621
BspPI GGATC 7 cut(s) 851, 932, 945, 1478, 1639, 2374, 2557
BspT104I TTCGAA 2 cut(s) 444, 1183
BspT107I GGYRCC 2 cut(s) 747, 982
BsrDI GCAATG 2 cut(s) 1074, 2687
BsrI ACTGG 5 cut(s) 616, 630, 1153, 1927, 2861
BssECI CCNNGG 5 cut(s) 285, 751, 1204, 1487, 2973
BssNAI GTATAC 1 cut(s) 1844
BssT1I CCWWGG 2 cut(s) 751, 1204
Bst1107I GTATAC 1 cut(s) 1844
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 6 cut(s) 538, 718, 1168, 1895, 2449, 2675
Bst6I CTCTTC 5 cut(s) 912, 2162, 2513, 2614, 2949
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstBI TTCGAA 2 cut(s) 444, 1183
BstC8I GCNNGC 5 cut(s) 282, 1215, 1440, 1887, 2570
BstDEI CTNAG 5 cut(s) 212, 1272, 1578, 2073, 2373
BstDSI CCRYGG 1 cut(s) 2973
BstEII GGTNACC 1 cut(s) 875
BstENI CCTNNNNNAGG 1 cut(s) 379
BstF5I GGATG 9 cut(s) 184, 291, 468, 495, 1096, 1691, 2296, 2761, 2932
BstHHI GCGC 1 cut(s) 729
BstMAI GTCTC 4 cut(s) 544, 909, 2164, 2941
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 3 cut(s) 223, 284, 2490
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 5 cut(s) 285, 743, 1320, 1486, 1487
BstSFI CTRYAG 2 cut(s) 97, 2628
BstSLI GKGCMC 1 cut(s) 1858
BstV2I GAAGAC 1 cut(s) 2483
BstX2I RGATCY 3 cut(s) 937, 2083, 2549
BstYI RGATCY 3 cut(s) 937, 2083, 2549
BstZ17I GTATAC 1 cut(s) 1844
Bsu15I ATCGAT 1 cut(s) 2114
BsuI GTATCC 1 cut(s) 1711
BsuRI GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1592
BsuTUI ATCGAT 1 cut(s) 2114
BtgI CCRYGG 1 cut(s) 2973
BtrI CACGTC 1 cut(s) 903
BtsCI GGATG 9 cut(s) 184, 291, 468, 495, 1096, 1691, 2296, 2761, 2932
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 4 cut(s) 1008, 1289, 1920, 2680
BveI ACCTGC 1 cut(s) 2621
Cac8I GCNNGC 5 cut(s) 282, 1215, 1440, 1887, 2570
CaiI CAGNNNCTG 1 cut(s) 1133
CfoI GCGC 1 cut(s) 729
Cfr13I GGNCC 1 cut(s) 66
Cfr9I CCCGGG 1 cut(s) 1487
ClaI ATCGAT 1 cut(s) 2114
Csp6I GTAC 1 cut(s) 748
CspCI CAANNNNNGTGG 2 cut(s) 1500, 1535
CviQI GTAC 1 cut(s) 748
DdeI CTNAG 5 cut(s) 212, 1272, 1578, 2073, 2373
DraIII CACNNNGTG 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 5 cut(s) 912, 2162, 2513, 2614, 2949
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 5 cut(s) 912, 2162, 2513, 2614, 2949
Eco130I CCWWGG 2 cut(s) 751, 1204
Eco147I AGGCCT 3 cut(s) 95, 385, 1277
Eco24I GRGCYC 2 cut(s) 489, 1584
Eco32I GATATC 1 cut(s) 971
Eco57I CTGAAG 1 cut(s) 928
Eco88I CYCGRG 1 cut(s) 1487
Eco91I GGTNACC 1 cut(s) 875
EcoNI CCTNNNNNAGG 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 875
EcoRI GAATTC 1 cut(s) 2778
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 971
EcoT14I CCWWGG 2 cut(s) 751, 1204
EcoT22I ATGCAT 1 cut(s) 2296
EcoT38I GRGCYC 2 cut(s) 489, 1584
ErhI CCWWGG 2 cut(s) 751, 1204
Esp3I CGTCTC 2 cut(s) 544, 909
FaqI GGGAC 3 cut(s) 760, 1135, 2246
FbaI TGATCA 3 cut(s) 226, 337, 1702
FblI GTMKAC 2 cut(s) 1843, 1990
FokI GGATG 9 cut(s) 191, 278, 475, 482, 1103, 1698, 2303, 2768, 2939
FriOI GRGCYC 2 cut(s) 489, 1584
GlaI GCGC 1 cut(s) 728
GsaI CCCAGC 1 cut(s) 810
GsuI CTGGAG 1 cut(s) 2250
HaeIII GGCC 8 cut(s) 68, 95, 290, 385, 404, 818, 1277, 1592
HapII CCGG 3 cut(s) 744, 1321, 1488
HhaI GCGC 1 cut(s) 729
Hin6I GCGC 1 cut(s) 727
HinP1I GCGC 1 cut(s) 727
HincII GTYRAC 2 cut(s) 1991, 2671
HindII GTYRAC 2 cut(s) 1991, 2671
HindIII AAGCTT 2 cut(s) 116, 923
HinfI GANTC 9 cut(s) 133, 551, 773, 811, 1200, 1494, 2178, 2959, 3002
HpaII CCGG 3 cut(s) 744, 1321, 1488
HphI GGTGA 9 cut(s) 151, 483, 869, 908, 1493, 2318, 2414, 2420, 2858
Hpy166II GTNNAC 7 cut(s) 653, 688, 1844, 1991, 2019, 2614, 2671
Hpy8I GTNNAC 7 cut(s) 653, 688, 1844, 1991, 2019, 2614, 2671
HpyCH4III ACNGT 6 cut(s) 538, 718, 1168, 1895, 2449, 2675
HpyCH4IV ACGT 2 cut(s) 902, 1676
HpyF3I CTNAG 5 cut(s) 212, 1272, 1578, 2073, 2373
HpySE526I ACGT 2 cut(s) 902, 1676
HspAI GCGC 1 cut(s) 727
KpnI GGTACC 1 cut(s) 751
Ksp22I TGATCA 3 cut(s) 226, 337, 1702
LmnI GCTCC 7 cut(s) 484, 724, 758, 1061, 1348, 2004, 2536
LweI GCATC 8 cut(s) 9, 114, 169, 961, 1738, 1947, 2281, 2710
MaeII ACGT 2 cut(s) 902, 1676
MaeIII GTNAC 5 cut(s) 841, 875, 896, 2057, 2149
MfeI CAATTG 3 cut(s) 333, 555, 2333
MflI RGATCY 3 cut(s) 937, 2083, 2549
MhlI GDGCHC 4 cut(s) 489, 1584, 1858, 2009
MlsI TGGCCA 1 cut(s) 290
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 2 cut(s) 560, 782
MmeI TCCRAC 2 cut(s) 1326, 2058
Mox20I TGGCCA 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 2296
MroXI GAANNNNTTC 3 cut(s) 1359, 2236, 2984
MscI TGGCCA 1 cut(s) 290
MslI CAYNNNNRTG 5 cut(s) 279, 663, 891, 1811, 2207
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 3 cut(s) 1697, 2432, 2879
MspI CCGG 3 cut(s) 744, 1321, 1488
MspR9I CCNGG 5 cut(s) 287, 745, 1322, 1488, 1489
MunI CAATTG 3 cut(s) 333, 555, 2333
Mva1269I GAATGC 3 cut(s) 1013, 1215, 1371
MvaI CCWGG 1 cut(s) 287
NciI CCSGG 4 cut(s) 745, 1322, 1488, 1489
NlaIV GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
NmuCI GTSAC 4 cut(s) 841, 875, 896, 2057
NsiI ATGCAT 1 cut(s) 2296
NspI RCATGY 3 cut(s) 223, 284, 2490
NspV TTCGAA 2 cut(s) 444, 1183
PaeI GCATGC 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 2621
PceI AGGCCT 3 cut(s) 95, 385, 1277
PctI GAATGC 3 cut(s) 1013, 1215, 1371
PdmI GAANNNNTTC 3 cut(s) 1359, 2236, 2984
PfeI GAWTC 6 cut(s) 133, 811, 1200, 1494, 2178, 2959
PflMI CCANNNNNTGG 1 cut(s) 37
PleI GAGTC 2 cut(s) 559, 781
PpsI GAGTC 2 cut(s) 559, 781
PshBI ATTAAT 2 cut(s) 1301, 1599
Psp6I CCWGG 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 875
PspFI CCCAGC 1 cut(s) 806
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 8 cut(s) 67, 110, 486, 749, 760, 939, 984, 1246
PspPI GGNCC 1 cut(s) 66
PstI CTGCAG 1 cut(s) 2632
PstNI CAGNNNCTG 1 cut(s) 1133
PsuI RGATCY 3 cut(s) 937, 2083, 2549
PvuII CAGCTG 2 cut(s) 1697, 2432
RsaI GTAC 1 cut(s) 749
RsaNI GTAC 1 cut(s) 748
RseI CAYNNNNRTG 5 cut(s) 279, 663, 891, 1811, 2207
SalI GTCGAC 1 cut(s) 1989
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 2 cut(s) 560, 782
ScrFI CCNGG 5 cut(s) 287, 745, 1322, 1488, 1489
SduI GDGCHC 4 cut(s) 489, 1584, 1858, 2009
SfaNI GCATC 8 cut(s) 9, 114, 169, 961, 1738, 1947, 2281, 2710
SfcI CTRYAG 2 cut(s) 97, 2628
SfuI TTCGAA 2 cut(s) 444, 1183
SmaI CCCGGG 1 cut(s) 1489
SmiMI CAYNNNNRTG 5 cut(s) 279, 663, 891, 1811, 2207
SmlI CTYRAG 2 cut(s) 317, 1933
SmoI CTYRAG 2 cut(s) 317, 1933
SpeI ACTAGT 1 cut(s) 2119
SphI GCATGC 1 cut(s) 284
SseBI AGGCCT 3 cut(s) 95, 385, 1277
SsiI CCGC 1 cut(s) 2877
SspI AATATT 1 cut(s) 2257
StuI AGGCCT 3 cut(s) 95, 385, 1277
StyD4I CCNGG 5 cut(s) 285, 743, 1320, 1486, 1487
StyI CCWWGG 2 cut(s) 751, 1204
TaaI ACNGT 6 cut(s) 538, 718, 1168, 1895, 2449, 2675
TaiI ACGT 2 cut(s) 905, 1679
TaqI TCGA 9 cut(s) 378, 444, 1086, 1123, 1183, 1375, 1586, 1990, 2114
TfiI GAWTC 6 cut(s) 133, 811, 1200, 1494, 2178, 2959
TscAI CASTG 4 cut(s) 1015, 1296, 1927, 2680
TseFI GTSAC 4 cut(s) 841, 875, 896, 2057
Tsp45I GTSAC 4 cut(s) 841, 875, 896, 2057
TspDTI ATGAA 9 cut(s) 299, 930, 1191, 1208, 1653, 1758, 1870, 2471, 2719
TspGWI ACGGA 2 cut(s) 1088, 1641
TspMI CCCGGG 1 cut(s) 1487
TspRI CASTG 4 cut(s) 1015, 1296, 1927, 2680
Van91I CCANNNNNTGG 1 cut(s) 37
VspI ATTAAT 2 cut(s) 1301, 1599
XagI CCTNNNNNAGG 1 cut(s) 379
XapI RAATTY 7 cut(s) 10, 787, 1179, 1470, 1535, 2411, 2778
XbaI TCTAGA 3 cut(s) 1225, 1418, 1904
XceI RCATGY 3 cut(s) 223, 284, 2490
XmaI CCCGGG 1 cut(s) 1487
XmiI GTMKAC 2 cut(s) 1843, 1990
XmnI GAANNNNTTC 3 cut(s) 1359, 2236, 2984
Zsp2I ATGCAT 1 cut(s) 2296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.