Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005457

Physical Location & Seq

Genomic Coordinates Reverse (-)

54694883 .. 54697180

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0402500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGATGATGAGCCAAGAGCAAGAGCAAGAGATCGACGAAGATCAGTTTCCAATTGGGATGCGTGTGCTTGTGGTAGATGATGATCGCACTGGCCTCCTCGACTTGGAAGCTGGGCTTCTTAACTGCCATTATCATGTTAAAGAGTATCAGCCATCCAGGAACGGCATTGTGGTTGTTAAGAGAAAGCAAGTGTTGTCTGCAACTCTGCAAGTGGAGATACAAATTACAAAGGTTGTGATGAAAGGAAAATTGAATGGAGCTTGTGATTATCTGCTGAAACCTGTCAGAGTGGAGCAGCTGAAGCTCATGTGGCAACATGTGTTCAAGATCAGGAGGAGGACAAAGATCAATGTCGATTTAATGACAAATATTTCAGCTGCCACCGCTTGTTGTTGTGCCTCACCAGTCCCCCTCTCAACCAAAAGAAGACGGAAGCAATGCAATGATCTAGACGATAACAAGGATCTTTCAAAACCATCATCATCAACCCCGCAAAAGCAAAAGCCTCAGCTTGTTTGGTCTATGGAAATGAGTCCAAAGTTACAGATTGCTGTTAAACATTTAGGCAATGTCGACAAGGCTGAGGCTGAACCCAAAAAGATTGTAGATCTGATGAATGTGGAAGGGCTGACAACAGAAAATGTGCCGACTGCAATCCAGAACCATAGGCTTTATTTTAAAGCATATGCTGATGCAATGGCAGCACGCGCTTCACATTCTAGCTTCTTCTTATCGGCCAATGCTTGGAAATTAAAGAATCCCGATGATGCTGCACTCCGAAAGTTTCATGAGGTGATGGAGTTGATGAATCAACAGAGGCTTAGAATAGCAAATACGCCAACCCTTCTGCAGAGACGTAGGCTTTATGTTCAAAGAAGGGGCTCACTCTCGCAATCCAAACCGCTGATCGAACCCATAGATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

cwf18

Protein Analysis

308

Amino Acids

35.13

Weight (kDa)

9.48

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05070
fragaria_vesca	FvH4_3g03920 FvH4_5g18550
malus_domestica	MD06G1240400.v1.1 MD14G1246600.v1.1
prunus_persica	Prupe.5G244900_v2.0.a1
pyrus_communis	pycom06g21570
rosa_chinensis	RchiOBHm_Chr5g0006211 RchiOBHm_Chr7g0176961
rosa_laevigata	RLG00000005568 RLG00000031374
rosa_multiflora	Rmu_co8466633.1_g000001 Rmu_sc0005310.1_g000038 Rmu_sc0009371.1_g000003 Rmu_sc0013468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276210
rosa_rugosa	Rorug04G0419900 Rorug06G0402400 Rorug06G0402500
rosa_samantha	Rh5AG048200 Rh5BG046900 Rh5CG055700 Rh5DG046600 Rh7AG001800 Rh7BG002200 Rh7CG001600 Rh7DG002200
rosa_wichuraiana	Rw5G004800 Rw7G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	1 cut(s)	708
AciI	CCGC	3 cut(s)	384, 491, 902
AclWI	GGATC	1 cut(s)	471
AcoI	YGGCCR	1 cut(s)	735
AcuI	CTGAAG	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	103, 744, 920
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	4 cut(s)	253, 325, 471, 872
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	7 cut(s)	110, 260, 298, 304, 377, 511, 723
AluI	AGCT	7 cut(s)	110, 260, 298, 304, 377, 511, 723
Alw26I	GTCTC	1 cut(s)	847
AlwI	GGATC	1 cut(s)	471
AoxI	GGCC	2 cut(s)	91, 735
ApeKI	GCWGC	4 cut(s)	295, 377, 701, 770
AspLEI	GCGC	1 cut(s)	710
AsuHPI	GGTGA	2 cut(s)	393, 805
BanII	GRGCYC	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	433
BbvCI	CCTCAGC	2 cut(s)	507, 582
BbvI	GCAGC	4 cut(s)	307, 364, 713, 757
BccI	CCATC	4 cut(s)	160, 484, 790, 914
BceAI	ACGGC	1 cut(s)	178
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	847
BfaI	CTAG	2 cut(s)	449, 720
BfmI	CTRYAG	1 cut(s)	848
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	4 cut(s)	296, 378, 702, 771
BlsI	GCNGC	4 cut(s)	297, 379, 703, 772
Bme1390I	CCNGG	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	3 cut(s)	48, 682, 757
BpiI	GAAGAC	1 cut(s)	433
Bpu10I	CCTNAGC	2 cut(s)	507, 582
BsaBI	GATNNNNATC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 744, 920
Bse1I	ACTGG	2 cut(s)	94, 404
Bse3DI	GCAATG	4 cut(s)	443, 448, 574, 702
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	63, 152
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	103, 744, 920
BseMI	GCAATG	4 cut(s)	443, 448, 574, 702
BseMII	CTCAG	2 cut(s)	521, 573
BseNI	ACTGG	2 cut(s)	94, 404
BseRI	GAGGAG	2 cut(s)	86, 349
BseXI	GCAGC	4 cut(s)	307, 364, 713, 757
BseYI	CCCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	93, 737
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	103, 744, 920
BsmAI	GTCTC	1 cut(s)	847
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	93, 737
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
BspACI	CCGC	3 cut(s)	384, 491, 902
BspANI	GGCC	2 cut(s)	93, 737
BspCNI	CTCAG	2 cut(s)	520, 574
BspFNI	CGCG	1 cut(s)	708
BspHI	TCATGA	1 cut(s)	787
BspMAI	CTGCAG	1 cut(s)	852
BspPI	GGATC	1 cut(s)	471
BsrDI	GCAATG	4 cut(s)	443, 448, 574, 702
BsrI	ACTGG	2 cut(s)	94, 404
BssMI	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
Bst2UI	CCWGG	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	3 cut(s)	507, 582, 821
BstF5I	GGATG	2 cut(s)	63, 152
BstFNI	CGCG	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	710
BstKTI	GATC	9 cut(s)	33, 43, 85, 330, 348, 448, 466, 610, 909
BstMAI	GTCTC	1 cut(s)	847
BstMBI	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
BstMWI	GCNNNNNNNGC	5 cut(s)	301, 310, 383, 701, 707
BstNI	CCWGG	1 cut(s)	157
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	848
BstUI	CGCG	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	307, 364, 713, 757
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	463, 607
BstYI	RGATCY	2 cut(s)	463, 607
BsuRI	GGCC	2 cut(s)	93, 737
BtsCI	GGATG	2 cut(s)	63, 152
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	706
CciI	TCATGA	1 cut(s)	787
CfoI	GCGC	1 cut(s)	710
CviAII	CATG	4 cut(s)	134, 307, 317, 788
DdeI	CTNAG	3 cut(s)	507, 582, 821
DpnI	GATC	9 cut(s)	32, 42, 84, 329, 347, 447, 465, 609, 908
DpnII	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	735
Eco24I	GRGCYC	1 cut(s)	884
Eco57I	CTGAAG	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	884
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	4 cut(s)	137, 310, 320, 791
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	4 cut(s)	133, 306, 316, 787
FauI	CCCGC	1 cut(s)	498
FauNDI	CATATG	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	296, 378, 702, 771
FokI	GGATG	2 cut(s)	70, 139
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	4 cut(s)	296, 378, 702, 771
FspBI	CTAG	2 cut(s)	449, 720
GlaI	GCGC	1 cut(s)	709
GluI	GCNGC	4 cut(s)	296, 378, 702, 771
GsaI	CCCAGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	93, 737
HhaI	GCGC	1 cut(s)	710
Hin1II	CATG	4 cut(s)	137, 310, 320, 791
Hin6I	GCGC	1 cut(s)	708
HinP1I	GCGC	1 cut(s)	708
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	3 cut(s)	532, 757, 808
HphI	GGTGA	2 cut(s)	393, 805
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	287, 612, 779
Hpy188III	TCNNGA	6 cut(s)	325, 331, 449, 658, 761, 788
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	617, 854, 870
HpyCH4IV	ACGT	1 cut(s)	856
HpyCH4V	TGCA	7 cut(s)	200, 208, 441, 653, 695, 773, 850
HpyF10VI	GCNNNNNNNGC	5 cut(s)	301, 310, 383, 701, 707
HpyF3I	CTNAG	3 cut(s)	507, 582, 821
HpySE526I	ACGT	1 cut(s)	856
Hsp92II	CATG	4 cut(s)	137, 310, 320, 791
HspAI	GCGC	1 cut(s)	708
Kzo9I	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
LmnI	GCTCC	2 cut(s)	257, 292
LpnPI	CCDG	8 cut(s)	75, 96, 142, 169, 294, 316, 417, 671
Lsp1109I	GCAGC	4 cut(s)	307, 364, 713, 757
LweI	GCATC	3 cut(s)	48, 682, 757
MaeI	CTAG	2 cut(s)	449, 720
MaeII	ACGT	1 cut(s)	856
MaeIII	GTNAC	1 cut(s)	540
MalI	GATC	9 cut(s)	32, 42, 84, 329, 347, 447, 465, 609, 908
MboI	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
MboII	GAAGA	3 cut(s)	50, 438, 718
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	2 cut(s)	463, 607
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	4 cut(s)	51, 222, 248, 749
MlyI	GAGTC	1 cut(s)	541
MseI	TTAA	8 cut(s)	120, 138, 177, 359, 555, 678, 752, 925
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	3 cut(s)	298, 377, 904
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	5 cut(s)	301, 310, 383, 701, 707
NdeI	CATATG	1 cut(s)	685
NdeII	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
NlaIII	CATG	4 cut(s)	137, 310, 320, 791
NspI	RCATGY	1 cut(s)	320
PagI	TCATGA	1 cut(s)	787
PciI	ACATGT	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	757, 808
PflMI	CCANNNNNTGG	1 cut(s)	744
PfoI	TCCNGGA	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	297, 379, 703, 772
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
PscI	ACATGT	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	852
PsuI	RGATCY	2 cut(s)	463, 607
PvuII	CAGCTG	2 cut(s)	298, 377
RseI	CAYNNNNRTG	1 cut(s)	132
SalI	GTCGAC	1 cut(s)	572
SaqAI	TTAA	8 cut(s)	120, 138, 177, 359, 555, 678, 752, 925
SatI	GCNGC	4 cut(s)	296, 378, 702, 771
Sau3AI	GATC	9 cut(s)	30, 40, 82, 327, 345, 445, 463, 607, 906
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	3 cut(s)	48, 682, 757
SfcI	CTRYAG	1 cut(s)	848
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	51, 222, 248, 749
SsiI	CCGC	3 cut(s)	384, 491, 902
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	2 cut(s)	449, 720
StyD4I	CCNGG	1 cut(s)	155
TaiI	ACGT	1 cut(s)	859
TaqI	TCGA	5 cut(s)	33, 99, 354, 573, 909
TasI	AATT	4 cut(s)	51, 222, 248, 749
TfiI	GAWTC	2 cut(s)	757, 808
Tru1I	TTAA	8 cut(s)	120, 138, 177, 359, 555, 678, 752, 925
Tru9I	TTAA	8 cut(s)	120, 138, 177, 359, 555, 678, 752, 925
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	4 cut(s)	295, 377, 701, 770
TspDTI	ATGAA	4 cut(s)	254, 629, 776, 821
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	744
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	1 cut(s)	320
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	2 cut(s)	449, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.