Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0005457

Physical Location & Seq

Genomic Coordinates Reverse (-)

203077 .. 205295

Gene Structure 2219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgaagcatacaacagcagctggtcttccaaaaaaaacagagagagagaacagcagctgccctaatttggtgtctccagtctcgcctcctcctcctgctgctgctaacagtctgcgatttaggcaaatggctgctgaagaggactccctcgaagaaatcgttgcggcacgaaaggagaggctcagagccctcaaagctgcacagcaactgttaaacactccggatgaggactctgctcaacttgaaagtaacactaacgatgaccaggaaaagagcaatgaaactcctgatggggatgaaactaccaacatgaaattccgaaattatgttcctcatgataagaagcttcaggaagggaagctagatccaccaaaaccatccaagtttgaagaccctgttgcagcagtgcctcctccatcagagaagaaagaggacccattcgtgaatattgctcctaaaaaaccaaactgggaacttcgtagggatgtgcagaagaagcttgataagcttgaaaggcgaacccagaaggcaatgtgtaaacttatggaacaagaaaagcagaggcaactggatgaagacagcatcaatggtgcaggggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

cwf18

Protein Analysis

200

Amino Acids

22.52

Weight (kDa)

5.66

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05070
fragaria_vesca	FvH4_3g03920 FvH4_5g18550
malus_domestica	MD06G1240400.v1.1 MD14G1246600.v1.1
prunus_persica	Prupe.5G244900_v2.0.a1
pyrus_communis	pycom06g21570
rosa_chinensis	RchiOBHm_Chr5g0006211 RchiOBHm_Chr7g0176961
rosa_laevigata	RLG00000005568 RLG00000031374
rosa_multiflora	Rmu_co8466633.1_g000001 Rmu_sc0005310.1_g000038 Rmu_sc0009371.1_g000003 Rmu_sc0013468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276210
rosa_rugosa	Rorug04G0419900 Rorug06G0402400 Rorug06G0402500
rosa_samantha	Rh5AG048200 Rh5BG046900 Rh5CG055700 Rh5DG046600 Rh7AG001800 Rh7BG002200 Rh7CG001600 Rh7DG002200
rosa_wichuraiana	Rw5G004800 Rw7G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	156, 332
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	245, 389, 512
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	7 cut(s)	20, 57, 197, 346, 361, 499, 508
AluI	AGCT	7 cut(s)	20, 57, 197, 346, 361, 499, 508
Alw26I	GTCTC	2 cut(s)	78, 85
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	3 cut(s)	20, 57, 208
Aor13HI	TCCGGA	1 cut(s)	220
ApeKI	GCWGC	8 cut(s)	17, 54, 57, 98, 101, 131, 197, 401
ApoI	RAATTY	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	433
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	3 cut(s)	17, 396, 582
BbvI	GCAGC	8 cut(s)	29, 44, 66, 85, 88, 118, 184, 413
BccI	CCATC	3 cut(s)	284, 385, 424
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	78, 85
BfaI	CTAG	1 cut(s)	362
BisI	GCNGC	9 cut(s)	18, 55, 58, 99, 102, 132, 165, 198, 402
BlsI	GCNGC	9 cut(s)	19, 56, 59, 100, 103, 133, 166, 199, 403
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	478
BmsI	GCATC	1 cut(s)	591
BmuI	ACTGGG	1 cut(s)	478
BpiI	GAAGAC	3 cut(s)	17, 396, 582
BpmI	CTGGAG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	3 cut(s)	77, 473, 573
Bse3DI	GCAATG	2 cut(s)	283, 537
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	5 cut(s)	229, 301, 377, 490, 577
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	283, 537
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	3 cut(s)	77, 473, 573
BseRI	GAGGAG	3 cut(s)	78, 81, 402
BseXI	GCAGC	8 cut(s)	29, 44, 66, 85, 88, 118, 184, 413
BsgI	GTGCAG	2 cut(s)	183, 509
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	78, 85
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	364
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	435
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	283, 537
BsrI	ACTGG	3 cut(s)	77, 473, 573
BssMI	GATC	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	110, 210
Bst6I	CTCTTC	1 cut(s)	132
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	5 cut(s)	229, 301, 377, 490, 577
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	78, 85
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 194, 496, 505, 514
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	264
BstV1I	GCAGC	8 cut(s)	29, 44, 66, 85, 88, 118, 184, 413
BstV2I	GAAGAC	3 cut(s)	17, 396, 582
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BtsCI	GGATG	5 cut(s)	229, 301, 377, 490, 577
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
CaiI	CAGNNNCTG	3 cut(s)	20, 57, 208
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	433
CviAII	CATG	2 cut(s)	310, 335
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	156, 332
EcoO109I	RGGNCCY	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	190
FaeI	CATG	2 cut(s)	313, 338
FaiI	YATR	5 cut(s)	9, 311, 327, 336, 545
FatI	CATG	2 cut(s)	309, 334
Fnu4HI	GCNGC	9 cut(s)	18, 55, 58, 99, 102, 132, 165, 198, 402
FokI	GGATG	5 cut(s)	236, 308, 364, 497, 584
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	9 cut(s)	18, 55, 58, 99, 102, 132, 165, 198, 402
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	9 cut(s)	18, 55, 58, 99, 102, 132, 165, 198, 402
GsuI	CTGGAG	1 cut(s)	60
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	2 cut(s)	313, 338
HindIII	AAGCTT	3 cut(s)	344, 497, 506
HinfI	GANTC	2 cut(s)	143, 230
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	3 cut(s)	185, 320, 421
Hpy188III	TCNNGA	5 cut(s)	221, 287, 335, 350, 442
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	347, 520
HpyCH4III	ACNGT	2 cut(s)	110, 210
HpyCH4V	TGCA	4 cut(s)	200, 401, 490, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 194, 496, 505, 514
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	313, 338
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	8 cut(s)	29, 44, 66, 85, 88, 118, 184, 413
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	7 cut(s)	17, 149, 164, 401, 436, 505, 587
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	3 cut(s)	64, 314, 322
MlyI	GAGTC	2 cut(s)	137, 224
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	1 cut(s)	212
MspA1I	CMGCKG	2 cut(s)	20, 57
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	5 cut(s)	121, 194, 496, 505, 514
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	313, 338
NlaIV	GGNNCC	1 cut(s)	435
PagI	TCATGA	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PkrI	GCNGC	9 cut(s)	19, 56, 59, 100, 103, 133, 166, 199, 403
PleI	GAGTC	2 cut(s)	137, 224
PpsI	GAGTC	2 cut(s)	137, 224
PpuMI	RGGWCCY	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	433
PspPPI	RGGWCCY	1 cut(s)	433
PstNI	CAGNNNCTG	3 cut(s)	20, 57, 208
PsuI	RGATCY	1 cut(s)	364
PvuII	CAGCTG	2 cut(s)	20, 57
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	9 cut(s)	18, 55, 58, 99, 102, 132, 165, 198, 402
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	2 cut(s)	137, 224
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	7 cut(s)	22, 59, 199, 348, 363, 501, 510
SfaNI	GCATC	1 cut(s)	591
SinI	GGWCC	1 cut(s)	433
Sse9I	AATT	3 cut(s)	64, 314, 322
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	110, 210
TaqI	TCGA	1 cut(s)	150
TasI	AATT	3 cut(s)	64, 314, 322
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	8 cut(s)	17, 54, 57, 98, 101, 131, 197, 401
TspDTI	ATGAA	5 cut(s)	17, 294, 312, 326, 588
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	1 cut(s)	314
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.