Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005457

Physical Location & Seq

Genomic Coordinates Reverse (-)

18346126 .. 18350186

Gene Structure 4061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCCGCTGAAGAGGACTCCATTGAACAAGTAGTTGCAGCACGTCAAGAGAGGCTAAGAGCTCTTAAAGCTGCGCAAGAACTCTTAAACACTCCAGATGAGGATTCCTCTCTGGTTGACTCTAATGCTGACGAAGACAATGAAACTAGCGAAGAAACCATGAAATTCCGAAATTATGTTCCTCATGATAAGAAGCTTCAGGAGGGAAAGCTTGTTCCACCAGTCCTACCAAAGTTTGAAGACCCTGTTGCAGCAGTACCTTCTCCCTCAGAGAAGAAAGAGGACCCGTTTGTGAATATTGCTCCTAAAAAACCAAACTGGGAACTTCGCAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGGCGAACCCAAAAGGCAATGTGTAAACTTATGGAGGAACAAGAGAAGCAAAAGCAATTGGATGAAGATGGCAGAAATGGTGCAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

cwf18

Protein Analysis

152

Amino Acids

17.3

Weight (kDa)

4.86

Isoelectric Point (pI)

71.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05070
fragaria_vesca	FvH4_3g03920 FvH4_5g18550
malus_domestica	MD06G1240400.v1.1 MD14G1246600.v1.1
prunus_persica	Prupe.5G244900_v2.0.a1
pyrus_communis	pycom06g21570
rosa_chinensis	RchiOBHm_Chr5g0006211 RchiOBHm_Chr7g0176961
rosa_laevigata	RLG00000005568 RLG00000031374
rosa_multiflora	Rmu_co8466633.1_g000001 Rmu_sc0005310.1_g000038 Rmu_sc0009371.1_g000003 Rmu_sc0013468.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276210
rosa_rugosa	Rorug04G0419900 Rorug06G0402400 Rorug06G0402500
rosa_samantha	Rh5AG048200 Rh5BG046900 Rh5CG055700 Rh5DG046600 Rh7AG001800 Rh7BG002200 Rh7CG001600 Rh7DG002200
rosa_wichuraiana	Rw5G004800 Rw7G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	75
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	2 cut(s)	30, 182
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	26, 239, 362
AjiI	CACGTC	1 cut(s)	44
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	6 cut(s)	62, 71, 196, 211, 349, 358
AluI	AGCT	6 cut(s)	62, 71, 196, 211, 349, 358
Alw21I	GWGCWC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	38, 71, 251
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	2 cut(s)	141, 246
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	3 cut(s)	50, 58, 263
BccI	CCATC	1 cut(s)	425
BfaI	CTAG	2 cut(s)	147, 454
BisI	GCNGC	4 cut(s)	6, 39, 72, 252
BlsI	GCNGC	4 cut(s)	7, 40, 73, 253
Bme18I	GGWCC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	328
BpiI	GAAGAC	2 cut(s)	141, 246
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
BpmI	CTGGAG	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	221, 323
Bse3DI	GCAATG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	340, 430
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	221, 323
BseXI	GCAGC	3 cut(s)	50, 58, 263
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	221, 323
Bst6I	CTCTTC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	56, 268
BstF5I	GGATG	2 cut(s)	340, 430
BstHHI	GCGC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 346, 355, 364
BstV1I	GCAGC	3 cut(s)	50, 58, 263
BstV2I	GAAGAC	2 cut(s)	141, 246
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	340, 430
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	2 cut(s)	160, 185
CviJI	RGCY	8 cut(s)	5, 55, 62, 71, 196, 211, 349, 358
CviKI_1	RGCY	8 cut(s)	5, 55, 62, 71, 196, 211, 349, 358
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	2 cut(s)	56, 268
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Ecl136II	GAGCTC	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	62
Eco57I	CTGAAG	2 cut(s)	30, 182
EcoICRI	GAGCTC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	283
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	2 cut(s)	163, 188
FaiI	YATR	4 cut(s)	161, 177, 186, 395
FatI	CATG	2 cut(s)	159, 184
Fnu4HI	GCNGC	4 cut(s)	6, 39, 72, 252
FokI	GGATG	2 cut(s)	347, 437
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	6, 39, 72, 252
FspBI	CTAG	2 cut(s)	147, 454
FspI	TGCGCA	1 cut(s)	75
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	4 cut(s)	6, 39, 72, 252
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	163, 188
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	4 cut(s)	194, 209, 347, 356
HinfI	GANTC	3 cut(s)	17, 104, 119
Hpy166II	GTNNAC	2 cut(s)	118, 389
Hpy188I	TCNGA	2 cut(s)	170, 271
Hpy188III	TCNNGA	4 cut(s)	47, 95, 185, 200
Hpy8I	GTNNAC	2 cut(s)	118, 389
HpyAV	CCTTC	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	38, 251, 340, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 346, 355, 364
HpyF3I	CTNAG	2 cut(s)	56, 268
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	163, 188
HspAI	GCGC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	98, 108, 185, 234, 258, 304, 316
Lsp1109I	GCAGC	3 cut(s)	50, 58, 263
MaeI	CTAG	2 cut(s)	147, 454
MaeII	ACGT	1 cut(s)	43
MboII	GAAGA	7 cut(s)	23, 146, 164, 251, 286, 355, 440
MfeI	CAATTG	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	164, 172, 419
MlyI	GAGTC	2 cut(s)	11, 113
MnlI	CCTC	9 cut(s)	7, 45, 94, 118, 192, 196, 274, 277, 391
MseI	TTAA	2 cut(s)	66, 86
MspA1I	CMGCKG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	419
MwoI	GCNNNNNNNGC	4 cut(s)	68, 346, 355, 364
NlaIII	CATG	2 cut(s)	163, 188
NlaIV	GGNNCC	1 cut(s)	285
NsbI	TGCGCA	1 cut(s)	75
PagI	TCATGA	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	7, 40, 73, 253
PleI	GAGTC	2 cut(s)	11, 113
PpsI	GAGTC	2 cut(s)	11, 113
PpuMI	RGGWCCY	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	66, 86
SatI	GCNGC	4 cut(s)	6, 39, 72, 252
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	11, 113
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	8 cut(s)	46, 64, 73, 198, 213, 262, 351, 360
SinI	GGWCC	1 cut(s)	283
Sse9I	AATT	3 cut(s)	164, 172, 419
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	2 cut(s)	147, 454
SstI	GAGCTC	1 cut(s)	64
TaiI	ACGT	1 cut(s)	46
TasI	AATT	3 cut(s)	164, 172, 419
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	66, 86
Tru9I	TTAA	2 cut(s)	66, 86
TseI	GCWGC	3 cut(s)	38, 71, 251
TspDTI	ATGAA	3 cut(s)	156, 176, 441
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	2 cut(s)	147, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.