Rh5CG055700

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005457
Physical Location & Seq
Reverse (-)
4050423 .. 4051160
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG055700.1

Sequence Viewer

Length: 453 bp
ATGGCAGGTCAAGAGGACTCCATTGAAGTAGTTGCTGCGACACGAAAAGAGATGATAAGAGCCCTTAGAGATGCACAGGAACTGTCAAACACTCCGGATGAGGACTCTGCTCGTATTAACAATAACACTGACGATGACAACGAAGCTAGTGAAGAAACTAATATGAGTGTGAAGTTCCGAAATTATTTCCCTCGTGATAAGAAGCTTATGGAAGGAAGGCTTAAAACTGGTCCAATATTGAAGTTTGATGACCCTATTGCAGCAGTGGTGCCTTTTCCATCAGAGAAGAAGTTCAAGGATCTTGTTCCCAAACCACCACACTTTGAACTTCAAAGGGATGTGCAGAAGAGGCTTGATAAGCTTGAAAGGCGAACGCAGAAGGCGTTGTGTAAAATTATGGAGCAAGAAAGGCTGAGGCAAGAGAATGAAGGTGGCATAAATGGTCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
cwf18

Protein Analysis

150

Amino Acids

17.24

Weight (kDa)

5.62

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cwf18 PF08315 8 - 135 6.6e-16 cwf18 pre-mRNA splicing factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 94
AclWI GGATC 1 cut(s) 306
AgsI TTSAA 6 cut(s) 26, 241, 295, 326, 332, 365
AluBI AGCT 4 cut(s) 146, 205, 361, 450
AluI AGCT 4 cut(s) 146, 205, 361, 450
AlwI GGATC 1 cut(s) 306
AlwNI CAGNNNCTG 1 cut(s) 82
Aor13HI TCCGGA 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 35, 260
Asp700I GAANNNNTTC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 230, 443
AvaII GGWCC 2 cut(s) 230, 443
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 64
BauI CACGAG 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 2 cut(s) 22, 272
BccI CCATC 1 cut(s) 286
BfaI CTAG 2 cut(s) 147, 451
BisI GCNGC 2 cut(s) 36, 261
BlsI GCNGC 2 cut(s) 37, 262
Bme18I GGWCC 2 cut(s) 230, 443
BmgT120I GGNCC 2 cut(s) 230, 443
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 61
Bpu10I CCTNAGC 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 94
BseGI GGATG 2 cut(s) 103, 343
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 1 cut(s) 232
BseXI GCAGC 2 cut(s) 22, 272
BsgI GTGCAG 1 cut(s) 362
BshNI GGYRCC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 405
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 1 cut(s) 306
BspT107I GGYRCC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 232
BssMI GATC 1 cut(s) 298
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 65, 413
BstF5I GGATG 2 cut(s) 103, 343
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 4 cut(s) 349, 358, 367, 409
BstV1I GCAGC 2 cut(s) 22, 272
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BtsCI GGATG 2 cut(s) 103, 343
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 126, 270
CaiI CAGNNNCTG 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 230, 443
CviJI RGCY 8 cut(s) 62, 146, 205, 220, 352, 361, 412, 450
CviKI_1 RGCY 8 cut(s) 62, 146, 205, 220, 352, 361, 412, 450
DdeI CTNAG 2 cut(s) 65, 413
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 230, 443
EcoT38I GRGCYC 1 cut(s) 64
FaiI YATR 4 cut(s) 164, 209, 398, 437
FalI AAGNNNNNCTT 2 cut(s) 204, 236
Fnu4HI GCNGC 2 cut(s) 36, 261
FokI GGATG 2 cut(s) 110, 350
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 36, 261
FspBI CTAG 2 cut(s) 147, 451
GluI GCNGC 2 cut(s) 36, 261
HapII CCGG 1 cut(s) 95
HindIII AAGCTT 2 cut(s) 203, 359
HinfI GANTC 2 cut(s) 17, 104
HpaII CCGG 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 179, 283
Hpy188III TCNNGA 3 cut(s) 11, 95, 194
HpyAV CCTTC 4 cut(s) 206, 210, 373, 422
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 74, 260, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 358, 367, 409
HpyF3I CTNAG 2 cut(s) 65, 413
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 3 cut(s) 62, 108, 213
Lsp1109I GCAGC 2 cut(s) 22, 272
LweI GCATC 1 cut(s) 61
MaeI CTAG 2 cut(s) 147, 451
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 3 cut(s) 164, 298, 358
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 2 cut(s) 181, 393
MlyI GAGTC 2 cut(s) 11, 98
MnlI CCTC 5 cut(s) 7, 94, 201, 342, 408
MroI TCCGGA 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 2 cut(s) 117, 222
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 349, 358, 367, 409
NdeII GATC 1 cut(s) 298
NlaIV GGNNCC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 380
PdmI GAANNNNTTC 1 cut(s) 290
PkrI GCNGC 2 cut(s) 37, 262
PleI GAGTC 2 cut(s) 11, 98
PpsI GAGTC 2 cut(s) 11, 98
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 2 cut(s) 230, 443
PstNI CAGNNNCTG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 298
SaqAI TTAA 2 cut(s) 117, 222
SatI GCNGC 2 cut(s) 36, 261
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 2 cut(s) 230, 443
SchI GAGTC 2 cut(s) 11, 98
SduI GDGCHC 1 cut(s) 64
SetI ASST 6 cut(s) 10, 148, 207, 363, 433, 452
SfaNI GCATC 1 cut(s) 61
SinI GGWCC 2 cut(s) 230, 443
Sse9I AATT 2 cut(s) 181, 393
SspI AATATT 1 cut(s) 237
SspMI CTAG 2 cut(s) 147, 451
TaaI ACNGT 1 cut(s) 84
TasI AATT 2 cut(s) 181, 393
Tru1I TTAA 2 cut(s) 117, 222
Tru9I TTAA 2 cut(s) 117, 222
TscAI CASTG 2 cut(s) 133, 270
TseI GCWGC 2 cut(s) 35, 260
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 2 cut(s) 133, 270
VpaK11BI GGWCC 2 cut(s) 230, 443
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 2 cut(s) 147, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.