MD05G1334500.v1.1

BEST Arabidopsis thaliana protein match is glycine-rich protein (TAIR AT3G29075.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014424
Physical Location & Seq
Forward (+)
45767054 .. 45768016
963 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1334500.v1.1.491

Sequence Viewer

Length: 963 bp
ATGGCATTCTACAGCTCCAACTACTATGAGGCTGGTGATCTTGGTGAGTATAGTTTAACCCCTTATGCTGATATTCATGATCATCATGCTTCTCTAGATCAAGGACCAACATCTTATTATTATTCTAGCCATGAGCCCCCCACCCAAAACTCGTATTATTATTCTAGCCATCAGCCCCCCACCCAAAACTTGTTTCAGTATGATCCAACTCCATCTCAATATTATTATGCTTGTCAAAATTCTTACACAAAACCTCTATCCATCAATTACTACCCAAATGTTTATAACCCGAGTTATGATGCTGAAGTGACTCAGTTTATGATATCTTATTCCGTTTCTTCCAAGTTTAATGAGCTTGAATTTGAAGAGTATGATCCTACACCTTATGGTGGTGGATTTGATATTGTTCAAACTTACGGAAAGCCCCTTTCGCCTTCACTTGAAACTTGTTATCCTCGTTCTTCTGGGCCTGCTGCACTAAATCCCCCCTCTTTAGAAGGTGTCACTGATGGCTCTATCGTGCCGTTGAGTGGTAAGCAAGAACCTTCTCAGCAAGCACCAAAACCCATCAATGGAAGCCAACCGATGCAAGCGGTTGAAGAAGAGAAGCAGCACCAAGAGAGGAGAGAAGATCAGCCAAGTCAAGTCGAAGAAAGCCCTAATCAAGTTGAGGAAAGTGAAGAAGTTGTGCAGGGTAGTTATGAACATGGGCAGGAAGTGTATAATCAAGTTCCTAGTGGATATGGACTGGAGGCCATGGATATTTGTGAGAGTTTGTTTGGGTATTGGCCTTGCCTGGCTCGTGATTTTAAGAGAGGCAATGGAAATGGTGATTCATGCTATGAATTTGGTAGTGGTGAAGGAAGATATGGGAATCCATGGAAAGGAACTGCAGATTATCTTTTCGGAAGCTCAAATCCGTATGGAGAAATAAGGGATGAAGGAAGCAACTATTTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.98

Weight (kDa)

4.3

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11440
fragaria_vesca FvH4_3g03190
malus_domestica MD05G1334500.v1.1
prunus_persica Prupe.4G030800_v2.0.a1
pyrus_communis pycom10g26080
rosa_chinensis RchiOBHm_Chr5g0004821 RchiOBHm_Chr5g0044981
rosa_laevigata RLG00000031264
rosa_multiflora Rmu_sc0008308.1_g000016 Rmu_sc0010871.1_g000006
rosa_roxburghii Rroxscaffold_1G00070790
rosa_rugosa Rorug04G0414000
rosa_samantha Rh5AG041900 Rh5BG041600 Rh5CG045500 Rh5DG042000
rosa_wichuraiana Rw5G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AciI CCGC 1 cut(s) 593
AclWI GGATC 2 cut(s) 197, 368
AcsI RAATTY 3 cut(s) 238, 359, 845
AcuI CTGAAG 1 cut(s) 324
AfiI CCNNNNNNNGG 4 cut(s) 389, 530, 572, 884
AgsI TTSAA 5 cut(s) 359, 365, 410, 443, 599
AjnI CCWGG 1 cut(s) 795
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AluBI AGCT 3 cut(s) 15, 355, 912
AluI AGCT 3 cut(s) 15, 355, 912
AlwI GGATC 2 cut(s) 197, 368
Ama87I CYCGRG 1 cut(s) 289
AoxI GGCC 3 cut(s) 467, 753, 788
ApeKI GCWGC 2 cut(s) 473, 610
ApoI RAATTY 3 cut(s) 238, 359, 845
AspS9I GGNCC 2 cut(s) 104, 467
AsuHPI GGTGA 4 cut(s) 47, 56, 842, 869
AvaI CYCGRG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 104
BanII GRGCYC 1 cut(s) 138
BauI CACGAG 1 cut(s) 801
BbvI GCAGC 2 cut(s) 460, 622
BccI CCATC 5 cut(s) 177, 220, 269, 503, 575
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 797
BclI TGATCA 1 cut(s) 79
BfaI CTAG 4 cut(s) 95, 126, 165, 735
BfmI CTRYAG 2 cut(s) 10, 891
BisI GCNGC 2 cut(s) 474, 611
BlsI GCNGC 2 cut(s) 475, 612
Bme1390I CCNGG 1 cut(s) 797
Bme18I GGWCC 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 104, 467
BmrFI CCNGG 1 cut(s) 797
BmsI GCATC 2 cut(s) 289, 576
BpmI CTGGAG 1 cut(s) 770
BsaJI CCNNGG 2 cut(s) 756, 878
Bsc4I CCNNNNNNNGG 4 cut(s) 389, 530, 572, 884
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 826
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 2 cut(s) 756, 878
BseGI GGATG 1 cut(s) 943
BseLI CCNNNNNNNGG 4 cut(s) 389, 530, 572, 884
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 2 cut(s) 326, 563
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 1 cut(s) 637
BseXI GCAGC 2 cut(s) 460, 622
BsgI GTGCAG 2 cut(s) 459, 710
BshFI GGCC 3 cut(s) 469, 755, 790
BsiHKCI CYCGRG 1 cut(s) 289
BslI CCNNNNNNNGG 4 cut(s) 389, 530, 572, 884
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 3 cut(s) 469, 755, 790
BsoBI CYCGRG 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 6 cut(s) 37, 79, 97, 202, 373, 631
Bsp19I CCATGG 2 cut(s) 756, 878
BspACI CCGC 1 cut(s) 593
BspANI GGCC 3 cut(s) 469, 755, 790
BspCNI CTCAG 2 cut(s) 325, 562
BspHI TCATGA 1 cut(s) 76
BspMAI CTGCAG 1 cut(s) 895
BspPI GGATC 2 cut(s) 197, 368
BsrDI GCAATG 1 cut(s) 826
BsrI ACTGG 1 cut(s) 753
BssECI CCNNGG 2 cut(s) 756, 878
BssMI GATC 6 cut(s) 37, 79, 97, 202, 373, 631
BssSI CACGAG 1 cut(s) 801
BssT1I CCWWGG 2 cut(s) 756, 878
Bst2BI CACGAG 1 cut(s) 801
Bst2UI CCWGG 1 cut(s) 797
Bst6I CTCTTC 2 cut(s) 360, 597
BstC8I GCNNGC 3 cut(s) 471, 555, 591
BstDEI CTNAG 2 cut(s) 312, 549
BstDSI CCRYGG 2 cut(s) 756, 878
BstF5I GGATG 1 cut(s) 943
BstKTI GATC 6 cut(s) 40, 82, 100, 205, 376, 634
BstMBI GATC 6 cut(s) 37, 79, 97, 202, 373, 631
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstNI CCWGG 1 cut(s) 797
BstSCI CCNGG 1 cut(s) 795
BstSFI CTRYAG 2 cut(s) 10, 891
BstV1I GCAGC 2 cut(s) 460, 622
BsuRI GGCC 3 cut(s) 469, 755, 790
BtgI CCRYGG 2 cut(s) 756, 878
BtsCI GGATG 1 cut(s) 943
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 471, 555, 591
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 104, 467
CviAII CATG 7 cut(s) 77, 86, 131, 707, 757, 837, 879
DdeI CTNAG 2 cut(s) 312, 549
DpnI GATC 6 cut(s) 39, 81, 99, 204, 375, 633
DpnII GATC 6 cut(s) 37, 79, 97, 202, 373, 631
Eam1104I CTCTTC 2 cut(s) 360, 597
EarI CTCTTC 2 cut(s) 360, 597
Eco130I CCWWGG 2 cut(s) 756, 878
Eco24I GRGCYC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 795
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 2 cut(s) 756, 878
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 2 cut(s) 756, 878
FaeI CATG 7 cut(s) 80, 89, 134, 710, 760, 840, 882
FatI CATG 7 cut(s) 76, 85, 130, 706, 756, 836, 878
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 474, 611
FokI GGATG 1 cut(s) 950
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 474, 611
FspBI CTAG 4 cut(s) 95, 126, 165, 735
GluI GCNGC 2 cut(s) 474, 611
GsuI CTGGAG 1 cut(s) 770
HaeIII GGCC 3 cut(s) 469, 755, 790
Hin1II CATG 7 cut(s) 80, 89, 134, 710, 760, 840, 882
HinfI GANTC 3 cut(s) 310, 833, 874
HphI GGTGA 4 cut(s) 47, 56, 842, 869
Hpy188I TCNGA 1 cut(s) 908
Hpy188III TCNNGA 3 cut(s) 77, 95, 803
HpyAV CCTTC 5 cut(s) 444, 491, 555, 854, 935
HpyCH4V TGCA 4 cut(s) 476, 589, 691, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 2 cut(s) 312, 549
Hsp92II CATG 7 cut(s) 80, 89, 134, 710, 760, 840, 882
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 6 cut(s) 37, 79, 97, 202, 373, 631
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 18, 450, 483, 677, 698, 734, 782, 809
Lsp1109I GCAGC 2 cut(s) 460, 622
LweI GCATC 2 cut(s) 289, 576
MaeI CTAG 4 cut(s) 95, 126, 165, 735
MaeIII GTNAC 2 cut(s) 307, 502
MalI GATC 6 cut(s) 39, 81, 99, 204, 375, 633
MboI GATC 6 cut(s) 37, 79, 97, 202, 373, 631
MboII GAAGA 9 cut(s) 330, 377, 453, 611, 614, 641, 662, 692, 876
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 4 cut(s) 238, 265, 359, 845
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 2 cut(s) 42, 230
MnlI CCTC 8 cut(s) 22, 264, 465, 499, 615, 664, 745, 809
MseI TTAA 3 cut(s) 56, 348, 810
MspR9I CCNGG 1 cut(s) 797
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 1 cut(s) 797
MwoI GCNNNNNNNGC 1 cut(s) 430
NcoI CCATGG 2 cut(s) 756, 878
NdeII GATC 6 cut(s) 37, 79, 97, 202, 373, 631
NlaIII CATG 7 cut(s) 80, 89, 134, 710, 760, 840, 882
NmuCI GTSAC 2 cut(s) 307, 502
PagI TCATGA 1 cut(s) 76
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 2 cut(s) 833, 874
PkrI GCNGC 2 cut(s) 475, 612
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PsiI TTATAA 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 795
PspGI CCWGG 1 cut(s) 795
PspPI GGNCC 2 cut(s) 104, 467
PstI CTGCAG 1 cut(s) 895
SaqAI TTAA 3 cut(s) 56, 348, 810
SatI GCNGC 2 cut(s) 474, 611
Sau3AI GATC 6 cut(s) 37, 79, 97, 202, 373, 631
Sau96I GGNCC 2 cut(s) 104, 467
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 797
SduI GDGCHC 1 cut(s) 138
SetI ASST 7 cut(s) 17, 256, 357, 385, 502, 547, 914
SfaNI GCATC 2 cut(s) 289, 576
SfcI CTRYAG 2 cut(s) 10, 891
SinI GGWCC 1 cut(s) 104
Sse9I AATT 4 cut(s) 238, 265, 359, 845
SsiI CCGC 1 cut(s) 593
SspI AATATT 1 cut(s) 221
SspMI CTAG 4 cut(s) 95, 126, 165, 735
StyD4I CCNGG 1 cut(s) 795
StyI CCWWGG 2 cut(s) 756, 878
TaqI TCGA 1 cut(s) 648
TasI AATT 4 cut(s) 238, 265, 359, 845
TfiI GAWTC 2 cut(s) 833, 874
Tru1I TTAA 3 cut(s) 56, 348, 810
Tru9I TTAA 3 cut(s) 56, 348, 810
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 2 cut(s) 307, 502
TseI GCWGC 2 cut(s) 473, 610
Tsp45I GTSAC 2 cut(s) 307, 502
TspDTI ATGAA 5 cut(s) 65, 717, 825, 858, 954
TspGWI ACGGA 3 cut(s) 322, 432, 909
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 104
XapI RAATTY 3 cut(s) 238, 359, 845
XbaI TCTAGA 1 cut(s) 94
XspI CTAG 4 cut(s) 95, 126, 165, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.