RchiOBHm_Chr5g0004821

BEST Arabidopsis thaliana protein match is glycine-rich protein (TAIR AT3G29075.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014424
Physical Location & Seq
Reverse (-)
3172073 .. 3173490
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28605

Sequence Viewer

Length: 933 bp
ATGGCCTACTACAGCTCCAGCTACTATCAAACTGGTCATGATGATCATGGTGAGTATTACTTAACCTCTTATACTCATAATCCTGATGATTCTGCTCCAATTTCTTATTCTAGCTATGAAGATCCCTGCTTTCAGAACTTGCTTGAATATCAATATCCAAACCCAACTCCATATTATCATGCCAATTACCACTCTGCCTCTGCTTACAGCAACCCCATTTCAATTCAATATGACCCCCCAAAATTCTATGAACAGAGTTATGAGACTGGTGTGACTCAGTTTCTGATTTCTTACTCTGTTTCCCCTGAGTTTAATGACCCTGAAATTGATGATTATGATGATTATGATCCAACACCTTACGGTGGTGGATACAACATTGATTCACAGTATGGTAAACCCCTTCCACCTTCAAATGAAACTTGTTATCCTCGCGGCGGTTCGTCCTCTCCTCTTGATCTAAAACCCCCAAATCTCAATGGCGCCATTGTTCCAGTTAGTGTTGGTGGTAATGAACCAATTGCTGATGAGCAAGCAGCAAAACCCATCAAGGAAATTAGCCAACCTACTAAGGAAGAAGAGCCAAGGCAGGTACTTGCAATTGAGAATGGGGATGACACTAAAAGCCAGGGAAAGACTAATCAAGGTGAGGTATACAATTCTGGGTCTGTAAGTGGGAGAGGGTTATATGATCGAGTGCCTAGTGGGTATGGATTGGAAGCCATGGACATGTGTGAGAGTCTATTTGGGTACTGGCCTTGTCTGGCTCGTGATTTGAGGAGATCGAATTGCGAGCCAGGCAATGACCTGCGATATTCTTGTGAAGGAAGGTATGAAAATTCATGGAAAGGAGCTGCAGATTATCTATTTGGGAGCTCAAATCCATATGGGGGAGAAAGAACCACTTACTATGAGTATGAAGACTACCGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.85

Weight (kDa)

4.31

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11440
fragaria_vesca FvH4_3g03190
malus_domestica MD05G1334500.v1.1
prunus_persica Prupe.4G030800_v2.0.a1
pyrus_communis pycom10g26080
rosa_chinensis RchiOBHm_Chr5g0004821 RchiOBHm_Chr5g0044981
rosa_laevigata RLG00000031264
rosa_multiflora Rmu_sc0008308.1_g000016 Rmu_sc0010871.1_g000006
rosa_roxburghii Rroxscaffold_1G00070790
rosa_rugosa Rorug04G0414000
rosa_samantha Rh5AG041900 Rh5BG041600 Rh5CG045500 Rh5DG042000
rosa_wichuraiana Rw5G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 577, 813
AccB1I GGYRCC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 651
AccII CGCG 1 cut(s) 432
AciI CCGC 2 cut(s) 432, 435
AclWI GGATC 2 cut(s) 116, 341
AcsI RAATTY 2 cut(s) 242, 835
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 2 cut(s) 591, 749
AfiI CCNNNNNNNGG 3 cut(s) 362, 434, 887
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 4 cut(s) 146, 222, 227, 411
AjnI CCWGG 2 cut(s) 624, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AluBI AGCT 5 cut(s) 15, 21, 114, 851, 873
AluI AGCT 5 cut(s) 15, 21, 114, 851, 873
Alw21I GWGCWC 1 cut(s) 875
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 2 cut(s) 116, 341
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 2 cut(s) 3, 752
ApeKI GCWGC 2 cut(s) 533, 851
ApoI RAATTY 2 cut(s) 242, 835
AspLEI GCGC 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 62, 656
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 875
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 924
Bbv12I GWGCWC 1 cut(s) 875
BbvI GCAGC 2 cut(s) 545, 838
BccI CCATC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 626, 795
BciVI GTATCC 1 cut(s) 362
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 111, 699
BfmI CTRYAG 2 cut(s) 10, 852
BfoI RGCGCY 1 cut(s) 483
BfuAI ACCTGC 2 cut(s) 577, 813
BfuI GTATCC 1 cut(s) 362
BisI GCNGC 3 cut(s) 433, 534, 852
BlsI GCNGC 3 cut(s) 434, 535, 853
Bme1390I CCNGG 2 cut(s) 626, 795
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 2 cut(s) 626, 795
BpiI GAAGAC 1 cut(s) 924
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 4 cut(s) 581, 625, 720, 925
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 434, 887
Bse1I ACTGG 4 cut(s) 37, 271, 491, 755
Bse3DI GCAATG 1 cut(s) 805
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 2 cut(s) 626, 795
BseDI CCNNGG 4 cut(s) 581, 625, 720, 925
BseGI GGATG 1 cut(s) 616
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 362, 434, 887
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 2 cut(s) 290, 297
BseNI ACTGG 4 cut(s) 37, 271, 491, 755
BseRI GAGGAG 2 cut(s) 438, 790
BseXI GCAGC 2 cut(s) 545, 838
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 2 cut(s) 5, 754
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 875
BslI CCNNNNNNNGG 3 cut(s) 362, 434, 887
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 2 cut(s) 5, 754
Bsp1286I GDGCHC 1 cut(s) 875
Bsp143I GATC 6 cut(s) 43, 121, 346, 454, 688, 779
Bsp19I CCATGG 1 cut(s) 720
BspACI CCGC 2 cut(s) 432, 435
BspANI GGCC 2 cut(s) 5, 754
BspCNI CTCAG 2 cut(s) 289, 298
BspFNI CGCG 1 cut(s) 432
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 856
BspMI ACCTGC 2 cut(s) 577, 813
BspPI GGATC 2 cut(s) 116, 341
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 805
BsrI ACTGG 4 cut(s) 37, 271, 491, 755
BssECI CCNNGG 4 cut(s) 581, 625, 720, 925
BssMI GATC 6 cut(s) 43, 121, 346, 454, 688, 779
BssNAI GTATAC 1 cut(s) 652
BssNI GRCGYC 1 cut(s) 480
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 2 cut(s) 581, 720
Bst1107I GTATAC 1 cut(s) 652
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 2 cut(s) 626, 795
Bst4CI ACNGT 2 cut(s) 362, 387
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 531, 791
BstDEI CTNAG 3 cut(s) 276, 306, 567
BstDSI CCRYGG 1 cut(s) 720
BstF5I GGATG 1 cut(s) 616
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 6 cut(s) 46, 124, 349, 457, 691, 782
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 6 cut(s) 43, 121, 346, 454, 688, 779
BstMWI GCNNNNNNNGC 1 cut(s) 795
BstNI CCWGG 2 cut(s) 626, 795
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 2 cut(s) 624, 793
BstSFI CTRYAG 2 cut(s) 10, 852
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 545, 838
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 652
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 5, 754
BtgI CCRYGG 1 cut(s) 720
BtsCI GGATG 1 cut(s) 616
BveI ACCTGC 2 cut(s) 577, 813
Cac8I GCNNGC 2 cut(s) 531, 791
CaiI CAGNNNCTG 1 cut(s) 283
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 482
Csp6I GTAC 2 cut(s) 590, 748
CviAII CATG 6 cut(s) 38, 47, 179, 721, 727, 840
CviQI GTAC 2 cut(s) 590, 748
DdeI CTNAG 3 cut(s) 276, 306, 567
DinI GGCGCC 1 cut(s) 481
DpnI GATC 6 cut(s) 45, 123, 348, 456, 690, 781
DpnII GATC 6 cut(s) 43, 121, 346, 454, 688, 779
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Ecl136II GAGCTC 1 cut(s) 873
Eco130I CCWWGG 2 cut(s) 581, 720
Eco24I GRGCYC 1 cut(s) 875
Eco53kI GAGCTC 1 cut(s) 873
EcoICRI GAGCTC 1 cut(s) 873
EcoRII CCWGG 2 cut(s) 624, 793
EcoT14I CCWWGG 2 cut(s) 581, 720
EcoT38I GRGCYC 1 cut(s) 875
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
ErhI CCWWGG 2 cut(s) 581, 720
FaeI CATG 6 cut(s) 41, 50, 182, 724, 730, 843
FalI AAGNNNNNCTT 2 cut(s) 886, 918
FatI CATG 6 cut(s) 37, 46, 178, 720, 726, 839
FauNDI CATATG 1 cut(s) 883
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 3 cut(s) 433, 534, 852
FokI GGATG 1 cut(s) 623
FriOI GRGCYC 1 cut(s) 875
Fsp4HI GCNGC 3 cut(s) 433, 534, 852
FspBI CTAG 2 cut(s) 111, 699
GlaI GCGC 1 cut(s) 481
GluI GCNGC 3 cut(s) 433, 534, 852
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 2 cut(s) 5, 754
HhaI GCGC 1 cut(s) 482
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 6 cut(s) 41, 50, 182, 724, 730, 843
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HinfI GANTC 4 cut(s) 89, 274, 380, 736
HphI GGTGA 2 cut(s) 62, 656
Hpy166II GTNNAC 2 cut(s) 395, 652
Hpy188I TCNGA 2 cut(s) 135, 285
Hpy188III TCNNGA 4 cut(s) 38, 83, 452, 767
Hpy8I GTNNAC 2 cut(s) 395, 652
HpyAV CCTTC 4 cut(s) 410, 417, 815, 819
HpyCH4III ACNGT 2 cut(s) 362, 387
HpyCH4V TGCA 2 cut(s) 596, 854
HpyF10VI GCNNNNNNNGC 1 cut(s) 795
HpyF3I CTNAG 3 cut(s) 276, 306, 567
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 6 cut(s) 41, 50, 182, 724, 730, 843
HspAI GCGC 1 cut(s) 480
KasI GGCGCC 1 cut(s) 479
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 6 cut(s) 43, 121, 346, 454, 688, 779
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 4 cut(s) 20, 100, 848, 870
Lsp1109I GCAGC 2 cut(s) 545, 838
MaeI CTAG 2 cut(s) 111, 699
MaeIII GTNAC 1 cut(s) 271
MalI GATC 6 cut(s) 45, 123, 348, 456, 690, 781
MboI GATC 6 cut(s) 43, 121, 346, 454, 688, 779
MboII GAAGA 4 cut(s) 131, 584, 587, 929
MfeI CAATTG 2 cut(s) 516, 597
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 875
Mly113I GGCGCC 1 cut(s) 480
MlyI GAGTC 2 cut(s) 268, 745
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 9 cut(s) 76, 208, 438, 454, 459, 640, 671, 768, 920
MseI TTAA 2 cut(s) 62, 312
MslI CAYNNNNRTG 1 cut(s) 725
MspR9I CCNGG 2 cut(s) 626, 795
MunI CAATTG 2 cut(s) 516, 597
MvaI CCWGG 2 cut(s) 626, 795
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 795
NarI GGCGCC 1 cut(s) 480
NcoI CCATGG 1 cut(s) 720
NdeI CATATG 1 cut(s) 883
NdeII GATC 6 cut(s) 43, 121, 346, 454, 688, 779
NlaIII CATG 6 cut(s) 41, 50, 182, 724, 730, 843
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 730
PagI TCATGA 1 cut(s) 37
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 89, 380
PkrI GCNGC 3 cut(s) 434, 535, 853
PleI GAGTC 2 cut(s) 268, 744
PluTI GGCGCC 1 cut(s) 483
PpsI GAGTC 2 cut(s) 268, 744
PscI ACATGT 1 cut(s) 726
Psp124BI GAGCTC 1 cut(s) 875
Psp6I CCWGG 2 cut(s) 624, 793
PspGI CCWGG 2 cut(s) 624, 793
PspN4I GGNNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 856
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 591, 749
RsaNI GTAC 2 cut(s) 590, 748
RseI CAYNNNNRTG 1 cut(s) 725
SacI GAGCTC 1 cut(s) 875
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 2 cut(s) 62, 312
SatI GCNGC 3 cut(s) 433, 534, 852
Sau3AI GATC 6 cut(s) 43, 121, 346, 454, 688, 779
SchI GAGTC 2 cut(s) 268, 745
ScrFI CCNGG 2 cut(s) 626, 795
SduI GDGCHC 1 cut(s) 875
SfcI CTRYAG 2 cut(s) 10, 852
SfoI GGCGCC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 725
SsiI CCGC 2 cut(s) 432, 435
SspDI GGCGCC 1 cut(s) 479
SspMI CTAG 2 cut(s) 111, 699
SstI GAGCTC 1 cut(s) 875
StyD4I CCNGG 2 cut(s) 624, 793
StyI CCWWGG 2 cut(s) 581, 720
TaaI ACNGT 2 cut(s) 362, 387
TaqI TCGA 2 cut(s) 691, 782
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 2 cut(s) 89, 380
Tru1I TTAA 2 cut(s) 62, 312
Tru9I TTAA 2 cut(s) 62, 312
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 533, 851
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 7 cut(s) 132, 264, 429, 525, 828, 846, 930
XapI RAATTY 2 cut(s) 242, 835
XceI RCATGY 1 cut(s) 730
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 2 cut(s) 111, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.