pycom10g26080

BEST Arabidopsis thaliana protein match is glycine-rich protein (TAIR AT3G29075.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014424
Physical Location & Seq
Forward (+)
27502308 .. 27503161
854 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g26080.2

Sequence Viewer

Length: 513 bp
ATGGAATTCTACAGCTCCAACTACTATGAGGCTGGTGATCGATTGCCCCTTTTGCCTTCACTTGAAACTTGTTATCCACGTTCTTCTGGGCCTGGTGCCTTAAATCCCTCCTCTTTCGATGGCGTCACTGATGGCTCTATCGTGCCGTTGAGTGGTAAGCAAGAAACTGCTGAGCAAGCACCAAAACCCATAAATGGAAGTGAACTGATATGGGCGGTTAAAGAAGAGAAGCAGCACCAAGAGAGGATAGAAGATCAGCCAAGCCAAGTAGATGAAAACCATAATCGAGTAGAAGAAAACCCTAATCAAGTTGAGAAAAGTGAAGAAGTTGTGCAGGGTAGTTATGAACATGAGAAGGAAGTGTATATTCAAGTTCCTAGTGGGTATGGATTGGAAGCCATGAATATTTGTGAGAGTTTGTTTGGGTACTGGCCTTGCCTTGCTCGTGCTTTCAAGAGAGGCAATGGAAATGGTGATTGTTGCTATGAATTTGGTAGTGATGAAGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.99

Weight (kDa)

4.48

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11440
fragaria_vesca FvH4_3g03190
malus_domestica MD05G1334500.v1.1
prunus_persica Prupe.4G030800_v2.0.a1
pyrus_communis pycom10g26080
rosa_chinensis RchiOBHm_Chr5g0004821 RchiOBHm_Chr5g0044981
rosa_laevigata RLG00000031264
rosa_multiflora Rmu_sc0008308.1_g000016 Rmu_sc0010871.1_g000006
rosa_roxburghii Rroxscaffold_1G00070790
rosa_rugosa Rorug04G0414000
rosa_samantha Rh5AG041900 Rh5BG041600 Rh5CG045500 Rh5DG042000
rosa_wichuraiana Rw5G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AciI CCGC 1 cut(s) 215
AcsI RAATTY 2 cut(s) 5, 488
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 152, 194
AgsI TTSAA 3 cut(s) 65, 371, 454
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
AoxI GGCC 2 cut(s) 89, 431
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 5, 488
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 47, 485
BanI GGYRCC 1 cut(s) 95
BauI CACGAG 1 cut(s) 444
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 113, 125
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 93
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 10
BisI GCNGC 1 cut(s) 233
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 194
Bse1I ACTGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 152, 194
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 244
BsgI GTGCAG 1 cut(s) 353
BshFI GGCC 2 cut(s) 91, 433
BshNI GGYRCC 1 cut(s) 95
BshVI ATCGAT 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 152, 194
BsnI GGCC 2 cut(s) 91, 433
Bsp143I GATC 2 cut(s) 37, 253
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 1 cut(s) 215
BspANI GGCC 2 cut(s) 91, 433
BspCNI CTCAG 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 40
BspLI GGNNCC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 1 cut(s) 434
BssMI GATC 2 cut(s) 37, 253
BssNI GRCGYC 1 cut(s) 123
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 93
Bst6I CTCTTC 1 cut(s) 219
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 171
BstKTI GATC 2 cut(s) 40, 256
BstMBI GATC 2 cut(s) 37, 253
BstMWI GCNNNNNNNGC 2 cut(s) 52, 176
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 40
BsuRI GGCC 2 cut(s) 91, 433
BsuTUI ATCGAT 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 89
ClaI ATCGAT 1 cut(s) 40
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 427
CviAII CATG 2 cut(s) 350, 400
CviJI RGCY 8 cut(s) 15, 32, 91, 135, 259, 264, 398, 433
CviKI_1 RGCY 8 cut(s) 15, 32, 91, 135, 259, 264, 398, 433
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 39, 255
DpnII GATC 2 cut(s) 37, 253
Eam1104I CTCTTC 1 cut(s) 219
EarI CTCTTC 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 353, 403
FatI CATG 2 cut(s) 349, 399
Fnu4HI GCNGC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 1 cut(s) 378
GluI GCNGC 1 cut(s) 233
HaeIII GGCC 2 cut(s) 91, 433
HgaI GACGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 353, 403
HphI GGTGA 2 cut(s) 47, 485
Hpy166II GTNNAC 1 cut(s) 203
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 1 cut(s) 203
HpyAV CCTTC 3 cut(s) 66, 349, 497
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 176
HpyF3I CTNAG 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 353, 403
Kzo9I GATC 2 cut(s) 37, 253
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 18, 72, 78, 105, 320, 415
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 1 cut(s) 378
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 39, 255
MboI GATC 2 cut(s) 37, 253
MboII GAAGA 5 cut(s) 75, 236, 263, 305, 335
MluCI AATT 2 cut(s) 5, 488
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 5 cut(s) 22, 118, 121, 237, 452
MseI TTAA 2 cut(s) 101, 219
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 52, 176
NdeII GATC 2 cut(s) 37, 253
NlaIII CATG 2 cut(s) 353, 403
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 89
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 2 cut(s) 101, 219
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 2 cut(s) 37, 253
Sau96I GGNCC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 93
SetI ASST 2 cut(s) 17, 82
SfcI CTRYAG 1 cut(s) 10
Sse9I AATT 2 cut(s) 5, 488
SsiI CCGC 1 cut(s) 215
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 82
TaqI TCGA 3 cut(s) 40, 117, 286
TasI AATT 2 cut(s) 5, 488
Tru1I TTAA 2 cut(s) 101, 219
Tru9I TTAA 2 cut(s) 101, 219
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 288, 360, 416, 501
TspRI CASTG 1 cut(s) 133
XapI RAATTY 2 cut(s) 5, 488
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.