Rh5BG041600

BEST Arabidopsis thaliana protein match is glycine-rich protein (TAIR AT3G29075.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014424
Physical Location & Seq
Reverse (-)
3051598 .. 3053184
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG041600.1

Sequence Viewer

Length: 936 bp
ATGGCCTACTACAGCTCCAGCTACTATCAAACTGGTCATGATGATCATGGTGAGTATTACTTAACCTCTTATGCTCATAACCCTGATGATTCTGCTCCAATTTCTTATTCTAGCTATGAAGATCCCAGCTTTCAGAACTTGCTTGAATATCAATATCCAAACCCAACTCCATATTATCATGCCAATTACCACTCTGCCTCTGTTTACAGCAACCCCATTTCGATTCAATATGACCCCCCAAAATTCTATGAACAGAGTTATGAGACTGGTGTGACTCAGTTTCTGATATCTTACTCTGTTTCCCCTGAGTTTAATGACCCTGAAATTGATGATTATGATGATTATGATCCAACACCTTACGGTGCTGGATACAACATTGATTCACAGTATGGTAAACCCCTTCCACCTTCAAATGCAACTTGTTATCCTCGCGGCGGTTCGTCCTCTCCTCTTGATCTAAAACCCCCAAATCTCAATGGCGCCATTGTTCCAGTTAGTGTTGGTGGTAATGAACCAATTGCTGATGATGAGCAAGCTGCAAAACCCATCAAGGAAATTAGCCAACCTACTAAGGAAGAAGAGCCAAGGCAGGTACTTGCAATTGAGAATGGGGATGACACTAAAAGCCAGGGAAAGACTAATCAAGGTGAGGTATACAATTCTGGGTCTGTAAGTGGGAGAGGGTTATATGATCGAGTGCCTAGTGGGTATGGATTGGAAGCCATGGACATGTGTGAGAGTCTATTTGGGTACTGGCCTTGTCTGGCTCGTGATTTGAGGAGATCGAATTGCGAGCCAGGCAATGACCTGCGATATTCTTGTGAAGGAAGGTATGAAAATTCATGGAAAGGAGCTGCAGATTATCTATTTGGGAGCTCAAATCCATATGGGGGAGAAAGAACCACTTATTATGAGTATGAAGACTACCGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

311

Amino Acids

34.9

Weight (kDa)

4.31

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11440
fragaria_vesca FvH4_3g03190
malus_domestica MD05G1334500.v1.1
prunus_persica Prupe.4G030800_v2.0.a1
pyrus_communis pycom10g26080
rosa_chinensis RchiOBHm_Chr5g0004821 RchiOBHm_Chr5g0044981
rosa_laevigata RLG00000031264
rosa_multiflora Rmu_sc0008308.1_g000016 Rmu_sc0010871.1_g000006
rosa_roxburghii Rroxscaffold_1G00070790
rosa_rugosa Rorug04G0414000
rosa_samantha Rh5AG041900 Rh5BG041600 Rh5CG045500 Rh5DG042000
rosa_wichuraiana Rw5G004060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 580, 816
AccB1I GGYRCC 1 cut(s) 479
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 432
AciI CCGC 2 cut(s) 432, 435
AclWI GGATC 2 cut(s) 116, 341
AcsI RAATTY 2 cut(s) 242, 838
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 2 cut(s) 594, 752
AfiI CCNNNNNNNGG 2 cut(s) 434, 890
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 3 cut(s) 146, 227, 411
AjnI CCWGG 2 cut(s) 627, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AluBI AGCT 7 cut(s) 15, 21, 114, 129, 536, 854, 876
AluI AGCT 7 cut(s) 15, 21, 114, 129, 536, 854, 876
Alw21I GWGCWC 1 cut(s) 878
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 2 cut(s) 116, 341
AlwNI CAGNNNCTG 1 cut(s) 283
AoxI GGCC 2 cut(s) 3, 755
ApeKI GCWGC 2 cut(s) 536, 854
ApoI RAATTY 2 cut(s) 242, 838
AspLEI GCGC 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 62, 659
BanI GGYRCC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 878
BauI CACGAG 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 1 cut(s) 878
BbvI GCAGC 2 cut(s) 523, 841
BccI CCATC 1 cut(s) 554
BciT130I CCWGG 2 cut(s) 629, 798
BciVI GTATCC 1 cut(s) 362
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 111, 702
BfmI CTRYAG 2 cut(s) 10, 855
BfoI RGCGCY 1 cut(s) 483
BfuAI ACCTGC 2 cut(s) 580, 816
BfuI GTATCC 1 cut(s) 362
BisI GCNGC 3 cut(s) 433, 537, 855
BlsI GCNGC 3 cut(s) 434, 538, 856
Bme1390I CCNGG 2 cut(s) 629, 798
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 2 cut(s) 629, 798
BpiI GAAGAC 1 cut(s) 927
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 4 cut(s) 584, 628, 723, 928
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 890
Bse1I ACTGG 4 cut(s) 37, 271, 491, 758
Bse3DI GCAATG 1 cut(s) 808
Bse8I GATNNNNATC 1 cut(s) 345
BseBI CCWGG 2 cut(s) 629, 798
BseDI CCNNGG 4 cut(s) 584, 628, 723, 928
BseGI GGATG 1 cut(s) 619
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 434, 890
BseMI GCAATG 1 cut(s) 808
BseMII CTCAG 2 cut(s) 290, 297
BseNI ACTGG 4 cut(s) 37, 271, 491, 758
BseRI GAGGAG 2 cut(s) 438, 793
BseXI GCAGC 2 cut(s) 523, 841
BseYI CCCAGC 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 2 cut(s) 5, 757
BshNI GGYRCC 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 878
BslI CCNNNNNNNGG 2 cut(s) 434, 890
BsmAI GTCTC 1 cut(s) 257
BsnI GGCC 2 cut(s) 5, 757
Bsp1286I GDGCHC 1 cut(s) 878
Bsp143I GATC 6 cut(s) 43, 121, 346, 454, 691, 782
Bsp19I CCATGG 1 cut(s) 723
BspACI CCGC 2 cut(s) 432, 435
BspANI GGCC 2 cut(s) 5, 757
BspCNI CTCAG 2 cut(s) 289, 298
BspFNI CGCG 1 cut(s) 432
BspHI TCATGA 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 2 cut(s) 580, 816
BspPI GGATC 2 cut(s) 116, 341
BspQI GCTCTTC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 808
BsrI ACTGG 4 cut(s) 37, 271, 491, 758
BssECI CCNNGG 4 cut(s) 584, 628, 723, 928
BssMI GATC 6 cut(s) 43, 121, 346, 454, 691, 782
BssNAI GTATAC 1 cut(s) 655
BssNI GRCGYC 1 cut(s) 480
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 2 cut(s) 584, 723
Bst1107I GTATAC 1 cut(s) 655
Bst2BI CACGAG 1 cut(s) 768
Bst2UI CCWGG 2 cut(s) 629, 798
Bst4CI ACNGT 2 cut(s) 362, 387
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 534, 794
BstDEI CTNAG 3 cut(s) 276, 306, 570
BstDSI CCRYGG 1 cut(s) 723
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 6 cut(s) 46, 124, 349, 457, 694, 785
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 6 cut(s) 43, 121, 346, 454, 691, 782
BstMWI GCNNNNNNNGC 1 cut(s) 798
BstNI CCWGG 2 cut(s) 629, 798
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 2 cut(s) 627, 796
BstSFI CTRYAG 2 cut(s) 10, 855
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 523, 841
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 655
BsuI GTATCC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 5, 757
BtgI CCRYGG 1 cut(s) 723
BtsCI GGATG 1 cut(s) 619
BveI ACCTGC 2 cut(s) 580, 816
Cac8I GCNNGC 2 cut(s) 534, 794
CaiI CAGNNNCTG 1 cut(s) 283
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 482
Csp6I GTAC 2 cut(s) 593, 751
CviAII CATG 6 cut(s) 38, 47, 179, 724, 730, 843
CviQI GTAC 2 cut(s) 593, 751
DdeI CTNAG 3 cut(s) 276, 306, 570
DinI GGCGCC 1 cut(s) 481
DpnI GATC 6 cut(s) 45, 123, 348, 456, 693, 784
DpnII GATC 6 cut(s) 43, 121, 346, 454, 691, 782
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Ecl136II GAGCTC 1 cut(s) 876
Eco130I CCWWGG 2 cut(s) 584, 723
Eco24I GRGCYC 1 cut(s) 878
Eco32I GATATC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 876
EcoICRI GAGCTC 1 cut(s) 876
EcoRII CCWGG 2 cut(s) 627, 796
EcoRV GATATC 1 cut(s) 288
EcoT14I CCWWGG 2 cut(s) 584, 723
EcoT38I GRGCYC 1 cut(s) 878
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
ErhI CCWWGG 2 cut(s) 584, 723
FaeI CATG 6 cut(s) 41, 50, 182, 727, 733, 846
FalI AAGNNNNNCTT 2 cut(s) 889, 921
FatI CATG 6 cut(s) 37, 46, 178, 723, 729, 842
FauNDI CATATG 1 cut(s) 886
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 3 cut(s) 433, 537, 855
FokI GGATG 1 cut(s) 626
FriOI GRGCYC 1 cut(s) 878
Fsp4HI GCNGC 3 cut(s) 433, 537, 855
FspBI CTAG 2 cut(s) 111, 702
GlaI GCGC 1 cut(s) 481
GluI GCNGC 3 cut(s) 433, 537, 855
GsaI CCCAGC 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 2 cut(s) 5, 757
HhaI GCGC 1 cut(s) 482
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 6 cut(s) 41, 50, 182, 727, 733, 846
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HinfI GANTC 5 cut(s) 89, 223, 274, 380, 739
HphI GGTGA 2 cut(s) 62, 659
Hpy166II GTNNAC 3 cut(s) 205, 395, 655
Hpy188I TCNGA 2 cut(s) 135, 285
Hpy188III TCNNGA 3 cut(s) 38, 452, 770
Hpy8I GTNNAC 3 cut(s) 205, 395, 655
HpyAV CCTTC 4 cut(s) 410, 417, 818, 822
HpyCH4III ACNGT 2 cut(s) 362, 387
HpyCH4V TGCA 4 cut(s) 416, 539, 599, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 798
HpyF3I CTNAG 3 cut(s) 276, 306, 570
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 6 cut(s) 41, 50, 182, 727, 733, 846
HspAI GCGC 1 cut(s) 480
KasI GGCGCC 1 cut(s) 479
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 6 cut(s) 43, 121, 346, 454, 691, 782
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 4 cut(s) 20, 100, 851, 873
Lsp1109I GCAGC 2 cut(s) 523, 841
MaeI CTAG 2 cut(s) 111, 702
MaeIII GTNAC 1 cut(s) 271
MalI GATC 6 cut(s) 45, 123, 348, 456, 693, 784
MboI GATC 6 cut(s) 43, 121, 346, 454, 691, 782
MboII GAAGA 4 cut(s) 131, 587, 590, 932
MfeI CAATTG 2 cut(s) 516, 600
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 878
Mly113I GGCGCC 1 cut(s) 480
MlyI GAGTC 2 cut(s) 268, 748
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 9 cut(s) 76, 208, 438, 454, 459, 643, 674, 771, 923
MseI TTAA 2 cut(s) 62, 312
MslI CAYNNNNRTG 1 cut(s) 728
MspR9I CCNGG 2 cut(s) 629, 798
MunI CAATTG 2 cut(s) 516, 600
MvaI CCWGG 2 cut(s) 629, 798
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 798
NarI GGCGCC 1 cut(s) 480
NcoI CCATGG 1 cut(s) 723
NdeI CATATG 1 cut(s) 886
NdeII GATC 6 cut(s) 43, 121, 346, 454, 691, 782
NlaIII CATG 6 cut(s) 41, 50, 182, 727, 733, 846
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 733
PagI TCATGA 1 cut(s) 37
PciI ACATGT 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 89, 223, 380
PkrI GCNGC 3 cut(s) 434, 538, 856
PleI GAGTC 2 cut(s) 268, 747
PluTI GGCGCC 1 cut(s) 483
PpsI GAGTC 2 cut(s) 268, 747
PscI ACATGT 1 cut(s) 729
Psp124BI GAGCTC 1 cut(s) 878
Psp6I CCWGG 2 cut(s) 627, 796
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 2 cut(s) 627, 796
PspN4I GGNNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 2 cut(s) 594, 752
RsaNI GTAC 2 cut(s) 593, 751
RseI CAYNNNNRTG 1 cut(s) 728
SacI GAGCTC 1 cut(s) 878
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 2 cut(s) 62, 312
SatI GCNGC 3 cut(s) 433, 537, 855
Sau3AI GATC 6 cut(s) 43, 121, 346, 454, 691, 782
SchI GAGTC 2 cut(s) 268, 748
ScrFI CCNGG 2 cut(s) 629, 798
SduI GDGCHC 1 cut(s) 878
SfcI CTRYAG 2 cut(s) 10, 855
SfoI GGCGCC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 728
SsiI CCGC 2 cut(s) 432, 435
SspDI GGCGCC 1 cut(s) 479
SspMI CTAG 2 cut(s) 111, 702
SstI GAGCTC 1 cut(s) 878
StyD4I CCNGG 2 cut(s) 627, 796
StyI CCWWGG 2 cut(s) 584, 723
TaaI ACNGT 2 cut(s) 362, 387
TaqI TCGA 3 cut(s) 221, 694, 785
TauI GCSGC 1 cut(s) 435
TfiI GAWTC 3 cut(s) 89, 223, 380
Tru1I TTAA 2 cut(s) 62, 312
Tru9I TTAA 2 cut(s) 62, 312
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 536, 854
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 6 cut(s) 132, 264, 525, 831, 849, 933
XapI RAATTY 2 cut(s) 242, 838
XceI RCATGY 1 cut(s) 733
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 2 cut(s) 111, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.