Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015018

Physical Location & Seq

Genomic Coordinates Forward (+)

46278171 .. 46281081

Gene Structure 2911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1342400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCAGATCTCTCCAGTGAAACTCAGAACTCCGGCTTTTGGGTCGCCGGAGTTCTTGAGCAGGAGGTGCCCAAAAAACCTCTCGTTCCTCTTCCCTCACACCCCTCACATATCTTCTGGCGAGTGTATCTCATTGGCCGGCAAAAACCAGAAGGGAACTTTCTGCAAGGCCTACGAGGCGGACCAGTCGAGGCCGCTGAAGATCAACATTGAGTTGCCAGACCAGCAGGAGGCGGCTCAGAGGCTGAAAATTGGTTTATACTTTGCTACCTGGTGGGCTCTGAATGTTGTGTTCAATATCTACAACAAGAAGGTTTTGAATATGTTTCCATACCCATGGCTCACATCAACTCTCTCCCTCGCAACTGGGTCGCTCATGATGCTCGTTTCAAGGGCCACCAGGATTGCTGAGGCTCCGAAAACTGATTTAGATTTTTGGAAGACTTTGCTTCCGGCAACTAAAAGGCTGAAAGTTGCGGTGGCACATACAATTGGGCATGTAGCGGGGACCATAAGCATGGCGAAGGTAGCAGTTTCGTTCACTCACATCATCAAGAGCAATGAGCCTGCATTCAGTGTATTGGTTTCAAGGTTCTTGTTAGGGTTCATGGGGGCTATGGTATCGAACCTGGCATTCGTGTTTAGGAACATATTTTCCAAGAAAGGGATGAAGGGGAAGTCTGTCAGTGGGATGAACTACTACGCTTGTCTTTCCATGTTGTCTCTATTGATCCTGATTCCGTTTGCCATCGCTGTGGAGGGCCCCAAGACGTGGGCTGCTGGATGGAACACTGCTCTTGCACAGATCGGTCCCAATTTCGTATGGTGGGTGGTGGCACAGAGTGTCTTCTATCACTTGTATAATCAGGTTTCATACATGTCACTAGGCCAGATATCTCCCTTAACATTCAGCGTTGGGAACACAATGAAGCGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009642 GO:0009643 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010109 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0015979 GO:0016020 GO:0019222 GO:0022804 GO:0022857 GO:0031090 GO:0031323 GO:0034219 GO:0034220 GO:0034284 GO:0034285 GO:0035436 GO:0042221 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071917 GO:0080167 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901700 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

313

Amino Acids

34.66

Weight (kDa)

10.01

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	82 - 201	1.5e-37	Triose-phosphate Transporter family
TPT	PF03151	200 - 311	5.5e-35	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61800 AT1G61800
fragaria_vesca	FvH4_3g02500 FvH4_3g02500
malus_domestica	MD05G1342400.v1.1 MD10G1316100.v1.1
prunus_persica	Prupe.4G024500_v2.0.a1
pyrus_communis	pycom10g26830
rosa_chinensis	RchiOBHm_Chr5g0003801
rosa_laevigata	RLG00000031176
rosa_multiflora	Rmu_sc0004212.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072190
rosa_samantha	Rh5BG032500 Rh5CG036500 Rh5DG032700
rosa_wichuraiana	Rw5G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	771
AciI	CCGC	6 cut(s)	179, 194, 233, 476, 503, 931
AclWI	GGATC	1 cut(s)	724
AcoI	YGGCCR	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	218
AdeI	CACNNNGTG	1 cut(s)	842
AfiI	CCNNNNNNNGG	4 cut(s)	38, 229, 663, 771
AflIII	ACRYGT	1 cut(s)	876
AgsI	TTSAA	4 cut(s)	295, 319, 390, 588
AjiI	CACGTC	1 cut(s)	771
AjnI	CCWGG	3 cut(s)	269, 398, 627
AloI	GAACNNNNNNTCC	2 cut(s)	638, 670
Alw26I	GTCTC	1 cut(s)	726
AlwI	GGATC	1 cut(s)	724
AlwNI	CAGNNNCTG	1 cut(s)	244
AoxI	GGCC	6 cut(s)	135, 168, 191, 393, 760, 886
ApaI	GGGCCC	1 cut(s)	764
ApeKI	GCWGC	1 cut(s)	776
AspS9I	GGNCC	6 cut(s)	181, 393, 507, 760, 761, 809
AvaII	GGWCC	3 cut(s)	181, 507, 809
BaeGI	GKGCMC	2 cut(s)	71, 764
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	2 cut(s)	280, 764
BbsI	GAAGAC	2 cut(s)	446, 838
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	763
BccI	CCATC	2 cut(s)	755, 777
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BciT130I	CCWGG	3 cut(s)	271, 400, 629
BcoDI	GTCTC	1 cut(s)	726
BfaI	CTAG	1 cut(s)	884
BglI	GCCNNNNNGGC	1 cut(s)	176
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	3 cut(s)	194, 234, 777
BlsI	GCNGC	3 cut(s)	195, 235, 778
Bme1390I	CCNGG	3 cut(s)	271, 400, 629
Bme18I	GGWCC	3 cut(s)	181, 507, 809
BmgBI	CACGTC	1 cut(s)	771
BmgT120I	GGNCC	6 cut(s)	181, 393, 507, 760, 761, 809
BmiI	GGNNCC	6 cut(s)	68, 414, 508, 762, 763, 811
BmrFI	CCNGG	3 cut(s)	271, 400, 629
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	375
BpiI	GAAGAC	2 cut(s)	446, 838
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 229, 663, 771
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	14, 184, 370
Bse3DI	GCAATG	1 cut(s)	565
BseBI	CCWGG	3 cut(s)	271, 400, 629
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	3 cut(s)	672, 696, 788
BseLI	CCNNNNNNNGG	4 cut(s)	38, 229, 663, 771
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	3 cut(s)	37, 251, 399
BseNI	ACTGG	3 cut(s)	14, 184, 370
BseSI	GKGCMC	2 cut(s)	71, 764
BseXI	GCAGC	1 cut(s)	763
BshFI	GGCC	6 cut(s)	137, 170, 193, 395, 762, 888
BshNI	GGYRCC	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	32, 47, 138, 452
BslFI	GGGAC	2 cut(s)	520, 795
BslI	CCNNNNNNNGG	4 cut(s)	38, 229, 663, 771
BsmAI	GTCTC	1 cut(s)	726
BsmFI	GGGAC	2 cut(s)	520, 795
BsmI	GAATGC	2 cut(s)	569, 632
BsnI	GGCC	6 cut(s)	137, 170, 193, 395, 762, 888
Bsp120I	GGGCCC	1 cut(s)	760
Bsp1286I	GDGCHC	3 cut(s)	71, 280, 764
Bsp143I	GATC	4 cut(s)	6, 201, 729, 804
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	6 cut(s)	179, 194, 233, 476, 503, 931
BspANI	GGCC	6 cut(s)	137, 170, 193, 395, 762, 888
BspCNI	CTCAG	3 cut(s)	36, 250, 400
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	6 cut(s)	68, 414, 508, 762, 763, 811
BspPI	GGATC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	565
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	14, 184, 370
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	4 cut(s)	6, 201, 729, 804
BssT1I	CCWWGG	1 cut(s)	335
Bst2UI	CCWGG	3 cut(s)	271, 400, 629
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	139, 567
BstDEI	CTNAG	3 cut(s)	23, 237, 408
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	672, 696, 788
BstKTI	GATC	4 cut(s)	9, 204, 732, 807
BstMAI	GTCTC	1 cut(s)	726
BstMBI	GATC	4 cut(s)	6, 201, 729, 804
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 176, 223, 379, 527
BstNI	CCWGG	3 cut(s)	271, 400, 629
BstNSI	RCATGY	2 cut(s)	500, 880
BstSCI	CCNGG	3 cut(s)	269, 398, 627
BstSLI	GKGCMC	2 cut(s)	71, 764
BstV1I	GCAGC	1 cut(s)	763
BstV2I	GAAGAC	2 cut(s)	446, 838
BstX2I	RGATCY	1 cut(s)	6
BstXI	CCANNNNNNTGG	3 cut(s)	336, 517, 754
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	6 cut(s)	137, 170, 193, 395, 762, 888
BtgI	CCRYGG	1 cut(s)	335
BtgZI	GCGATG	1 cut(s)	733
BtrI	CACGTC	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	672, 696, 788
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	4 cut(s)	21, 580, 691, 789
Cac8I	GCNNGC	2 cut(s)	139, 567
CaiI	CAGNNNCTG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	6 cut(s)	181, 393, 507, 760, 761, 809
CsiI	ACCWGGT	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	7 cut(s)	336, 376, 497, 517, 607, 715, 877
DdeI	CTNAG	3 cut(s)	23, 237, 408
DpnI	GATC	4 cut(s)	8, 203, 731, 806
DpnII	GATC	4 cut(s)	6, 201, 729, 804
DraIII	CACNNNGTG	1 cut(s)	842
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	335
Eco147I	AGGCCT	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	280, 764
Eco32I	GATATC	1 cut(s)	894
Eco47I	GGWCC	3 cut(s)	181, 507, 809
Eco57I	CTGAAG	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	760, 761
EcoRII	CCWGG	3 cut(s)	269, 398, 627
EcoRV	GATATC	1 cut(s)	894
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	2 cut(s)	280, 764
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	7 cut(s)	339, 379, 500, 520, 610, 718, 880
FaqI	GGGAC	2 cut(s)	520, 795
FatI	CATG	7 cut(s)	335, 375, 496, 516, 606, 714, 876
FauI	CCCGC	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	194, 234, 777
FokI	GGATG	3 cut(s)	679, 703, 795
FriOI	GRGCYC	2 cut(s)	280, 764
Fsp4HI	GCNGC	3 cut(s)	194, 234, 777
FspBI	CTAG	1 cut(s)	884
GluI	GCNGC	3 cut(s)	194, 234, 777
HaeIII	GGCC	6 cut(s)	137, 170, 193, 395, 762, 888
HapII	CCGG	4 cut(s)	32, 47, 138, 452
Hin1II	CATG	7 cut(s)	339, 379, 500, 520, 610, 718, 880
HinfI	GANTC	1 cut(s)	736
HpaII	CCGG	4 cut(s)	32, 47, 138, 452
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	4 cut(s)	26, 240, 282, 417
Hpy188III	TCNNGA	4 cut(s)	55, 376, 553, 733
Hpy8I	GTNNAC	1 cut(s)	540
HpyAV	CCTTC	4 cut(s)	145, 304, 517, 664
HpyCH4IV	ACGT	1 cut(s)	770
HpyCH4V	TGCA	4 cut(s)	4, 165, 569, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 176, 223, 379, 527
HpyF3I	CTNAG	3 cut(s)	23, 237, 408
HpySE526I	ACGT	1 cut(s)	770
Hsp92II	CATG	7 cut(s)	339, 379, 500, 520, 610, 718, 880
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	6, 201, 729, 804
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	1 cut(s)	763
LweI	GCATC	1 cut(s)	369
MabI	ACCWGGT	1 cut(s)	269
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	1 cut(s)	770
MaeIII	GTNAC	1 cut(s)	879
MalI	GATC	4 cut(s)	8, 203, 731, 806
MboI	GATC	4 cut(s)	6, 201, 729, 804
MboII	GAAGA	5 cut(s)	82, 105, 211, 451, 838
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	3 cut(s)	71, 280, 764
MluCI	AATT	3 cut(s)	249, 489, 814
MroNI	GCCGGC	1 cut(s)	137
MseI	TTAA	1 cut(s)	902
MslI	CAYNNNNRTG	3 cut(s)	334, 515, 752
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	4 cut(s)	32, 47, 138, 452
MspR9I	CCNGG	3 cut(s)	271, 400, 629
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	2 cut(s)	569, 632
MvaI	CCWGG	3 cut(s)	271, 400, 629
MwoI	GCNNNNNNNGC	5 cut(s)	66, 176, 223, 379, 527
NaeI	GCCGGC	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	4 cut(s)	6, 201, 729, 804
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	7 cut(s)	339, 379, 500, 520, 610, 718, 880
NlaIV	GGNNCC	6 cut(s)	68, 414, 508, 762, 763, 811
NmuCI	GTSAC	1 cut(s)	879
NspI	RCATGY	2 cut(s)	500, 880
PagI	TCATGA	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	170
PciI	ACATGT	1 cut(s)	876
PctI	GAATGC	2 cut(s)	569, 632
PdiI	GCCGGC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	736
PflMI	CCANNNNNTGG	1 cut(s)	771
PkrI	GCNGC	3 cut(s)	195, 235, 778
PscI	ACATGT	1 cut(s)	876
Psp6I	CCWGG	3 cut(s)	269, 398, 627
PspGI	CCWGG	3 cut(s)	269, 398, 627
PspN4I	GGNNCC	6 cut(s)	68, 414, 508, 762, 763, 811
PspOMI	GGGCCC	1 cut(s)	760
PspPI	GGNCC	6 cut(s)	181, 393, 507, 760, 761, 809
PstNI	CAGNNNCTG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	6
RseI	CAYNNNNRTG	3 cut(s)	334, 515, 752
SaqAI	TTAA	1 cut(s)	902
SatI	GCNGC	3 cut(s)	194, 234, 777
Sau3AI	GATC	4 cut(s)	6, 201, 729, 804
Sau96I	GGNCC	6 cut(s)	181, 393, 507, 760, 761, 809
ScrFI	CCNGG	3 cut(s)	271, 400, 629
SduI	GDGCHC	3 cut(s)	71, 280, 764
SetI	ASST	9 cut(s)	68, 81, 272, 315, 528, 593, 630, 773, 870
SexAI	ACCWGGT	1 cut(s)	269
SfaNI	GCATC	1 cut(s)	369
SinI	GGWCC	3 cut(s)	181, 507, 809
SmiMI	CAYNNNNRTG	3 cut(s)	334, 515, 752
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
Sse9I	AATT	3 cut(s)	249, 489, 814
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	6 cut(s)	179, 194, 233, 476, 503, 931
SspMI	CTAG	1 cut(s)	884
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	269, 398, 627
StyI	CCWWGG	1 cut(s)	335
TaiI	ACGT	1 cut(s)	773
TaqI	TCGA	2 cut(s)	188, 623
TaqII	GACCGA	1 cut(s)	797
TasI	AATT	3 cut(s)	249, 489, 814
TauI	GCSGC	2 cut(s)	196, 236
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	1 cut(s)	902
Tru9I	TTAA	1 cut(s)	902
TscAI	CASTG	4 cut(s)	21, 580, 691, 796
TseFI	GTSAC	1 cut(s)	879
TseI	GCWGC	1 cut(s)	776
Tsp45I	GTSAC	1 cut(s)	879
TspDTI	ATGAA	4 cut(s)	595, 683, 707, 861
TspGWI	ACGGA	1 cut(s)	729
TspRI	CASTG	4 cut(s)	21, 580, 691, 796
Van91I	CCANNNNNTGG	1 cut(s)	771
VpaK11BI	GGWCC	3 cut(s)	181, 507, 809
XceI	RCATGY	2 cut(s)	500, 880
XspI	CTAG	1 cut(s)	884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.