Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015018

Physical Location & Seq

Genomic Coordinates Reverse (-)

2335036 .. 2338016

Gene Structure 2981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGATCTCTTCAGTTAGGCTCAGAACCCCAACTTTCACGTCGGCACAGTTCTCGAACCAGAAGTGTTGTTTGGGAAAGATAGAGTATTGTTCCCTCCCTAATATTCAGAATGCGAAACAGAGCATCCTCTGTTCCTCCAAGCCGCTTCACATTTCTTCAGCCGGTTTTGCGTTGGTGGCCAAGACTCACAAGCGCGGTTCGACAAGGTGTGATGTCTATGAGGCAGACAGATCACGCCCGATTGAGATCAACATCGACCTACCGGACCAGCAGGTTCGGAAGGAGACAGCTCAGACTCTCAAGATTAGTCTCTACTTTGCGATCTGGTGGGCTTTGAATGTTGTGTTCAATATATACAACAAGAAGGTTTTGAATGTGTTCCCATTTCCATGGCTCACATCCACGTTGTCACTCGCAACTGGGTCTCTGATGATGCTCATTTCATGGGCCGTTGGGATTGCTGAAGCCCCCAAAACAGATATGGACTTCTGGAAGACATTGTTTCCGGTTGCAGTGGCGCATTCAATTGGGCATGTAGCAGCGACCGTGAGTATGTCAAAGGTTGCAGTTTCATTCACGCATATCATCAAGAGTGGTGAACCTGCTTTCAGTGTCTTGGTTTCGAGGTTCTTATTAGGCGAAACGTTTCCCAGTTCGGTTTACCTCTCACTGTTGCCAATTATCGGAGGGTGTGCGCTTGCTGCTGTAACCGAGATCAATTTCAACATGATTGGGTTTATGGGTGCTATGATATCGAATCTGGCATTCGTGTTCCGAAACATATTTTCGAAGAAAGGGATGAAGGGGAAGTCTGTCAGTGGCATGAACTACTATGCTTGTCTGTCTATGTTGTCTCTATTGATCCTGATTCCGTTTGCCATTGCCGTCGAGGGTCCCCAGTTATGGGCAGCTGGATGGAAGACAGCTCTTGCACAGATTGGTCCCAATTTCATATGGTGGTTGGCAGCTCAGAGTATCTTCTATCACTTGTATAATCAGGTTTCATACATGTCACTCGATCAGATTTCTCCCTTAACATTCAGCATCGGGAACACAATGAAGCGTATATCCGTCATAGTTTCCTCCATTATCATTTTCCGCACCCCTGTTCAACCGGTCAATTGCCTTGGAGCAGGCATTGCAATCCTTGGCACCTTCCTCTACTCACAGGGCAACAAGGGCAGCAAGGGCAGCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0008643 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009642 GO:0009643 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010109 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0015979 GO:0016020 GO:0019222 GO:0022804 GO:0022857 GO:0031090 GO:0031323 GO:0034219 GO:0034220 GO:0034284 GO:0034285 GO:0035436 GO:0042221 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071917 GO:0080167 GO:0098588 GO:0098656 GO:0098805 GO:1901264 GO:1901505 GO:1901700 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

400

Amino Acids

43.88

Weight (kDa)

9.68

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	100 - 389	3.4e-115	Triose-phosphate Transporter family
EamA	PF00892	106 - 234	2.3e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61800 AT1G61800
fragaria_vesca	FvH4_3g02500 FvH4_3g02500
malus_domestica	MD05G1342400.v1.1 MD10G1316100.v1.1
prunus_persica	Prupe.4G024500_v2.0.a1
pyrus_communis	pycom10g26830
rosa_chinensis	RchiOBHm_Chr5g0003801
rosa_laevigata	RLG00000031176
rosa_multiflora	Rmu_sc0004212.1_g000010
rosa_roxburghii	Rroxscaffold_1G00072190
rosa_samantha	Rh5BG032500 Rh5CG036500 Rh5DG032700
rosa_wichuraiana	Rw5G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	262, 610
AccB1I	GGYRCC	1 cut(s)	1151
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	143, 195, 1099
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	1 cut(s)	856
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	2 cut(s)	141, 483
AfiI	CCNNNNNNNGG	3 cut(s)	683, 903, 904
AflIII	ACRYGT	1 cut(s)	1008
AgeI	ACCGGT	1 cut(s)	1114
AgsI	TTSAA	6 cut(s)	337, 349, 373, 525, 724, 1112
AjiI	CACGTC	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	4 cut(s)	290, 911, 926, 968
AluI	AGCT	4 cut(s)	290, 911, 926, 968
Alw26I	GTCTC	4 cut(s)	278, 314, 429, 858
AlwI	GGATC	1 cut(s)	856
AoxI	GGCC	2 cut(s)	177, 447
ApeKI	GCWGC	6 cut(s)	539, 701, 908, 965, 1182, 1191
AsiGI	ACCGGT	1 cut(s)	1114
Asp700I	GAANNNNTTC	2 cut(s)	377, 645
AspLEI	GCGC	3 cut(s)	195, 520, 697
AspS9I	GGNCC	4 cut(s)	265, 447, 893, 941
AsuHPI	GGTGA	1 cut(s)	608
AsuII	TTCGAA	1 cut(s)	788
AvaII	GGWCC	3 cut(s)	265, 893, 941
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	1151
BbsI	GAAGAC	2 cut(s)	500, 926
BbvI	GCAGC	5 cut(s)	551, 688, 920, 977, 1194
BccI	CCATC	1 cut(s)	909
BceAI	ACGGC	2 cut(s)	434, 869
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BcoDI	GTCTC	4 cut(s)	278, 314, 429, 858
BfuAI	ACCTGC	2 cut(s)	262, 610
BisI	GCNGC	7 cut(s)	143, 540, 702, 909, 966, 1183, 1192
BlsI	GCNGC	7 cut(s)	144, 541, 703, 910, 967, 1184, 1193
Bme18I	GGWCC	3 cut(s)	265, 893, 941
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	4 cut(s)	265, 447, 893, 941
BmiI	GGNNCC	4 cut(s)	894, 895, 943, 1153
BmrI	ACTGGG	3 cut(s)	429, 645, 892
BmsI	GCATC	3 cut(s)	132, 423, 1053
BmuI	ACTGGG	3 cut(s)	429, 645, 892
BpiI	GAAGAC	2 cut(s)	500, 926
Bpu14I	TTCGAA	1 cut(s)	788
BpuEI	CTTGAG	1 cut(s)	284
BsaBI	GATNNNNATC	2 cut(s)	245, 251
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	389, 1126, 1147
BsaWI	WCCGGW	3 cut(s)	262, 505, 1114
Bsc4I	CCNNNNNNNGG	3 cut(s)	683, 903, 904
Bse118I	RCCGGY	2 cut(s)	161, 1114
Bse1I	ACTGG	3 cut(s)	424, 651, 898
Bse3DI	GCAATG	2 cut(s)	879, 1137
Bse8I	GATNNNNATC	2 cut(s)	245, 251
BseDI	CCNNGG	3 cut(s)	389, 1126, 1147
BseGI	GGATG	4 cut(s)	123, 398, 804, 920
BseJI	GATNNNNATC	2 cut(s)	245, 251
BseLI	CCNNNNNNNGG	3 cut(s)	683, 903, 904
BseMI	GCAATG	2 cut(s)	879, 1137
BseMII	CTCAG	3 cut(s)	34, 305, 983
BseNI	ACTGG	3 cut(s)	424, 651, 898
BseXI	GCAGC	5 cut(s)	551, 688, 920, 977, 1194
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	2 cut(s)	179, 449
BshNI	GGYRCC	1 cut(s)	1151
BshTI	ACCGGT	1 cut(s)	1114
BsiEI	CGRYCG	1 cut(s)	546
BsiSI	CCGG	4 cut(s)	162, 263, 506, 1115
BslFI	GGGAC	2 cut(s)	879, 927
BslI	CCNNNNNNNGG	3 cut(s)	683, 903, 904
BsmAI	GTCTC	4 cut(s)	278, 314, 429, 858
BsmFI	GGGAC	2 cut(s)	879, 927
BsmI	GAATGC	3 cut(s)	115, 520, 764
BsnI	GGCC	2 cut(s)	179, 449
Bso31I	GGTCTC	1 cut(s)	429
Bsp119I	TTCGAA	1 cut(s)	788
Bsp143I	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
Bsp19I	CCATGG	1 cut(s)	389
BspACI	CCGC	3 cut(s)	143, 195, 1099
BspANI	GGCC	2 cut(s)	179, 449
BspCNI	CTCAG	3 cut(s)	33, 304, 982
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	894, 895, 943, 1153
BspMI	ACCTGC	2 cut(s)	262, 610
BspPI	GGATC	1 cut(s)	856
BspT104I	TTCGAA	1 cut(s)	788
BspT107I	GGYRCC	1 cut(s)	1151
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	2 cut(s)	879, 1137
BsrFI	RCCGGY	2 cut(s)	161, 1114
BsrI	ACTGG	3 cut(s)	424, 651, 898
BssAI	RCCGGY	2 cut(s)	161, 1114
BssECI	CCNNGG	3 cut(s)	389, 1126, 1147
BssMI	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
BssT1I	CCWWGG	3 cut(s)	389, 1126, 1147
Bst4CI	ACNGT	3 cut(s)	48, 547, 672
Bst6I	CTCTTC	1 cut(s)	13
BstAPI	GCANNNNNTGC	1 cut(s)	1139
BstBI	TTCGAA	1 cut(s)	788
BstC8I	GCNNGC	2 cut(s)	699, 1135
BstDEI	CTNAG	3 cut(s)	20, 291, 969
BstDSI	CCRYGG	1 cut(s)	389
BstF5I	GGATG	4 cut(s)	123, 398, 804, 920
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	3 cut(s)	195, 520, 697
BstKTI	GATC	7 cut(s)	6, 233, 249, 324, 717, 864, 1021
BstMAI	GTCTC	4 cut(s)	278, 314, 429, 858
BstMBI	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	7 cut(s)	167, 176, 701, 1139, 1179, 1188, 1191
BstNSI	RCATGY	2 cut(s)	536, 1012
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	5 cut(s)	551, 688, 920, 977, 1194
BstV2I	GAAGAC	2 cut(s)	500, 926
BstXI	CCANNNNNNTGG	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	179, 449
BtgI	CCRYGG	1 cut(s)	389
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	123, 398, 804, 920
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	4 cut(s)	519, 616, 668, 823
BveI	ACCTGC	2 cut(s)	262, 610
Cac8I	GCNNGC	2 cut(s)	699, 1135
CfoI	GCGC	3 cut(s)	195, 520, 697
Cfr10I	RCCGGY	2 cut(s)	161, 1114
Cfr13I	GGNCC	4 cut(s)	265, 447, 893, 941
CspAI	ACCGGT	1 cut(s)	1114
CviAII	CATG	6 cut(s)	390, 444, 533, 727, 823, 1009
DdeI	CTNAG	3 cut(s)	20, 291, 969
DpnI	GATC	7 cut(s)	5, 232, 248, 323, 716, 863, 1020
DpnII	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco130I	CCWWGG	3 cut(s)	389, 1126, 1147
Eco31I	GGTCTC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	753
Eco47I	GGWCC	3 cut(s)	265, 893, 941
Eco57I	CTGAAG	2 cut(s)	141, 483
EcoO109I	RGGNCCY	1 cut(s)	893
EcoRV	GATATC	1 cut(s)	753
EcoT14I	CCWWGG	3 cut(s)	389, 1126, 1147
ErhI	CCWWGG	3 cut(s)	389, 1126, 1147
FaeI	CATG	6 cut(s)	393, 447, 536, 730, 826, 1012
FaqI	GGGAC	2 cut(s)	879, 927
FatI	CATG	6 cut(s)	389, 443, 532, 726, 822, 1008
FauNDI	CATATG	1 cut(s)	953
Fnu4HI	GCNGC	7 cut(s)	143, 540, 702, 909, 966, 1183, 1192
FokI	GGATG	4 cut(s)	110, 385, 811, 927
Fsp4HI	GCNGC	7 cut(s)	143, 540, 702, 909, 966, 1183, 1192
GlaI	GCGC	3 cut(s)	194, 519, 696
GluI	GCNGC	7 cut(s)	143, 540, 702, 909, 966, 1183, 1192
HaeIII	GGCC	2 cut(s)	179, 449
HapII	CCGG	4 cut(s)	162, 263, 506, 1115
HhaI	GCGC	3 cut(s)	195, 520, 697
Hin1II	CATG	6 cut(s)	393, 447, 536, 730, 826, 1012
Hin6I	GCGC	3 cut(s)	193, 518, 695
HinP1I	GCGC	3 cut(s)	193, 518, 695
HinfI	GANTC	4 cut(s)	184, 295, 757, 868
HpaII	CCGG	4 cut(s)	162, 263, 506, 1115
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	2 cut(s)	599, 661
Hpy188I	TCNGA	9 cut(s)	23, 108, 279, 294, 429, 686, 776, 972, 1023
Hpy188III	TCNNGA	6 cut(s)	52, 301, 490, 589, 865, 1048
Hpy8I	GTNNAC	2 cut(s)	599, 661
Hpy99I	CGWCG	2 cut(s)	43, 890
HpyAV	CCTTC	4 cut(s)	274, 358, 796, 1165
HpyCH4III	ACNGT	3 cut(s)	48, 547, 672
HpyCH4IV	ACGT	3 cut(s)	38, 404, 644
HpyCH4V	TGCA	4 cut(s)	512, 566, 932, 1142
HpyF10VI	GCNNNNNNNGC	7 cut(s)	167, 176, 701, 1139, 1179, 1188, 1191
HpyF3I	CTNAG	3 cut(s)	20, 291, 969
HpySE526I	ACGT	3 cut(s)	38, 404, 644
Hsp92II	CATG	6 cut(s)	393, 447, 536, 730, 826, 1012
HspAI	GCGC	3 cut(s)	193, 518, 695
KflI	GGGWCCC	1 cut(s)	893
Kzo9I	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
LmnI	GCTCC	1 cut(s)	1130
Lsp1109I	GCAGC	5 cut(s)	551, 688, 920, 977, 1194
LweI	GCATC	3 cut(s)	132, 423, 1053
MaeII	ACGT	3 cut(s)	38, 404, 644
MaeIII	GTNAC	3 cut(s)	408, 706, 1011
MalI	GATC	7 cut(s)	5, 232, 248, 323, 716, 863, 1020
MboI	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
MboII	GAAGA	5 cut(s)	147, 505, 802, 931, 970
MfeI	CAATTG	2 cut(s)	525, 1120
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	5 cut(s)	525, 678, 718, 946, 1120
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	2 cut(s)	178, 289
Mox20I	TGGCCA	1 cut(s)	179
MroXI	GAANNNNTTC	2 cut(s)	377, 645
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	1034
MslI	CAYNNNNRTG	1 cut(s)	388
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	4 cut(s)	162, 263, 506, 1115
MunI	CAATTG	2 cut(s)	525, 1120
Mva1269I	GAATGC	3 cut(s)	115, 520, 764
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	7 cut(s)	167, 176, 701, 1139, 1179, 1188, 1191
NcoI	CCATGG	1 cut(s)	389
NdeI	CATATG	1 cut(s)	953
NdeII	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
NlaIII	CATG	6 cut(s)	393, 447, 536, 730, 826, 1012
NlaIV	GGNNCC	4 cut(s)	894, 895, 943, 1153
NmuCI	GTSAC	2 cut(s)	408, 1011
NspI	RCATGY	2 cut(s)	536, 1012
NspV	TTCGAA	1 cut(s)	788
PciI	ACATGT	1 cut(s)	1008
PctI	GAATGC	3 cut(s)	115, 520, 764
PdmI	GAANNNNTTC	2 cut(s)	377, 645
PfeI	GAWTC	2 cut(s)	757, 868
PinAI	ACCGGT	1 cut(s)	1114
PkrI	GCNGC	7 cut(s)	144, 541, 703, 910, 967, 1184, 1193
PleI	GAGTC	2 cut(s)	178, 289
PpsI	GAGTC	2 cut(s)	178, 289
PpuMI	RGGWCCY	1 cut(s)	893
PscI	ACATGT	1 cut(s)	1008
Psp1406I	AACGTT	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	893
PspN4I	GGNNCC	4 cut(s)	894, 895, 943, 1153
PspPI	GGNCC	4 cut(s)	265, 447, 893, 941
PspPPI	RGGWCCY	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	911
RseI	CAYNNNNRTG	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	1034
SatI	GCNGC	7 cut(s)	143, 540, 702, 909, 966, 1183, 1192
Sau3AI	GATC	7 cut(s)	3, 230, 246, 321, 714, 861, 1018
Sau96I	GGNCC	4 cut(s)	265, 447, 893, 941
SchI	GAGTC	2 cut(s)	178, 289
SfaNI	GCATC	3 cut(s)	132, 423, 1053
SfuI	TTCGAA	1 cut(s)	788
SinI	GGWCC	3 cut(s)	265, 893, 941
SmiMI	CAYNNNNRTG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	5 cut(s)	525, 678, 718, 946, 1120
SsiI	CCGC	3 cut(s)	143, 195, 1099
SspI	AATATT	1 cut(s)	103
StyI	CCWWGG	3 cut(s)	389, 1126, 1147
TaaI	ACNGT	3 cut(s)	48, 547, 672
TaiI	ACGT	3 cut(s)	41, 407, 647
TaqI	TCGA	8 cut(s)	53, 200, 255, 623, 755, 788, 888, 1017
TasI	AATT	5 cut(s)	525, 678, 718, 946, 1120
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	757, 868
Tru1I	TTAA	1 cut(s)	1034
Tru9I	TTAA	1 cut(s)	1034
TscAI	CASTG	4 cut(s)	519, 616, 675, 823
TseFI	GTSAC	2 cut(s)	408, 1011
TseI	GCWGC	6 cut(s)	539, 701, 908, 965, 1182, 1191
Tsp45I	GTSAC	2 cut(s)	408, 1011
TspDTI	ATGAA	7 cut(s)	432, 561, 815, 839, 940, 993, 1073
TspGWI	ACGGA	2 cut(s)	861, 1060
TspRI	CASTG	4 cut(s)	519, 616, 675, 823
VpaK11BI	GGWCC	3 cut(s)	265, 893, 941
XceI	RCATGY	2 cut(s)	536, 1012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XmnI	GAANNNNTTC	2 cut(s)	377, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.