Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0013892

Physical Location & Seq

Genomic Coordinates Reverse (-)

25632452 .. 25636109

Gene Structure 3658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1117300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAGTTGTTCTACATCCTTCTGTTCGGGGGAATGGCAGCGGTGGTGGCAGCTCTCGAGCTGAGCAAGAACAACAAAGATCGCATTCATACCACCTCTGCTTTCAATGCCTTCAAGAACAATTACCTCCTCATATACTCTCTCATGATGGCTGGTGATTGGTTGCAGGGTCCATATGTTTACTATCTATACAGCCAGTATGGGTTCAGCAAGGGGGACATTGGACAACTTTTTATTGCTGGGTTTGGATCATCCATGTTGTTCGGGACAATTGTTGGATCTCTAGCTGACAAACAGGGTCGGAAGAGGGCATGTATTACGTACTGCATAACTTACATTCTAAGCTGCTTCACCAAACATTTTCCCGACTATAAGGTTTTATTGTTGGGACGCATATTGGGAGGCATTGCTACTTCTCTACTTTTTTCAGCTTTTGAGTCTTGGCTTGTGGCGGAACATAATAAGAGGGGCTTCGAGCAACAGTGGCTTTCATTGACATTCTCTAAGGCTGTATTTCTTGGAAATGGTCTAATTGCTATAGTAGCTGGGTTGCTTGGGAATCTTCTGGTAGATACTTTGGGATTTGGCCCCGTTTCTCCATTTGATGCTGCTGCATGCTTTTTGGCAATTGGCATGGCAATTATAATGGTATCATGGGGTGAAAATTATGGGGATGATACAGAAAACAAGAACTTACTTACCCAGTTCAGGGGTGCTGCCATAGCCATTGCTTCTGATGAGAAAATTGCTTTGCTGGGTGCCATACAGTCCCTATTTGAAGGCTCAATGTACACCTTTGTATTCCTCTGGACTCCTGCTTTGAGCCCAAATGATGAGGAGATTCCACACGGTTTCATTTTTGCAACATTCATGCTAGCCTCGATGTTGGGAAGCTCTTTAGCGTCTCGGCTGATGGCAGGTTCATCCCTAAGAGTTGAGAGCTACATGCAGATTGTATTTGCAGTCTCTGCGGCTTCCCTTCTGCTTCCCATTGTGACAAGCTTCTTGATTGCACCTTCCGATGTGAAAGGTGGGAGCATGTCATTATCAGGGTATTGTCAGCTTGTTGGCTTCTGCACATTTGAGGCCTGCGTGGGAATATTCTGGCCATCTATCATGAAAATGAGGTCCCAATACATCCCAGAGGAGGCGAGAAGCACCATCATGAACTTCTTCCGCATTCCTCTCAACATCTTTGTGTGCGTTGTGCTGTACAATGTTAATGCATTTCCCATCACCATCATGTTTGGTATGTGCTCGATTTTCCTTTCTATGGCTGCTGTATTGCAGAGGCGGCTCATGGTGATTTCTGATGGCCACAAGTCAAAACCAGAAGAATGGACAATGCAGGAGAGGGACACAGAAGCGGAGCCATTAAACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0038023 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051716 GO:0060089 GO:0065007 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

462

Amino Acids

50.78

Weight (kDa)

5.65

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_5	PF05631	4 - 358	4e-184	Sugar-tranasporters, 12 TM
MFS_1	PF07690	43 - 392	2.7e-17	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64650 AT1G64650
fragaria_vesca	FvH4_5g11030 FvH4_5g11030 FvH4_5g11030
malus_domestica	MD06G1117300.v1.1
prunus_persica	Prupe.5G128400_v2.0.a1 Prupe.5G128400_v2.0.a1
pyrus_communis	pycom06g10920
rosa_chinensis	RchiOBHm_Chr7g0186771
rosa_laevigata	RLG00000004817
rosa_multiflora	Rmu_sc0009734.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267840
rosa_rugosa	Rorug06G0476500
rosa_samantha	Rh7BG080500 Rh7CG083500
rosa_wichuraiana	Rw7G007240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	908
AccB1I	GGYRCC	1 cut(s)	758
AciI	CCGC	6 cut(s)	41, 452, 971, 1177, 1294, 1367
AclWI	GGATC	2 cut(s)	256, 286
AcoI	YGGCCR	2 cut(s)	1106, 1315
AfaI	GTAC	3 cut(s)	323, 791, 1214
AfiI	CCNNNNNNNGG	4 cut(s)	708, 709, 1147, 1273
AgsI	TTSAA	3 cut(s)	106, 115, 779
Alw21I	GWGCWC	1 cut(s)	1259
Alw26I	GTCTC	2 cut(s)	909, 970
AlwI	GGATC	2 cut(s)	256, 286
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	4 cut(s)	586, 1086, 1106, 1315
ApeKI	GCWGC	7 cut(s)	38, 50, 345, 608, 611, 716, 1277
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
Asp700I	GAANNNNTTC	1 cut(s)	1172
AspS9I	GGNCC	3 cut(s)	170, 587, 1128
AsuHPI	GGTGA	5 cut(s)	167, 343, 671, 1228, 1315
AsuNHI	GCTAGC	1 cut(s)	874
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	2 cut(s)	170, 1128
BalI	TGGCCA	2 cut(s)	1108, 1317
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	1259
BbvI	GCAGC	7 cut(s)	50, 62, 332, 595, 598, 703, 1264
BccI	CCATC	7 cut(s)	142, 907, 1117, 1169, 1241, 1247, 1307
BcoDI	GTCTC	2 cut(s)	909, 970
BfaI	CTAG	2 cut(s)	284, 875
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	908
BisI	GCNGC	9 cut(s)	39, 51, 346, 609, 612, 717, 972, 1278, 1295
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	9 cut(s)	40, 52, 347, 610, 613, 718, 973, 1279, 1296
Bme18I	GGWCC	2 cut(s)	170, 1128
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	3 cut(s)	170, 587, 1128
BmiI	GGNNCC	5 cut(s)	171, 589, 760, 1130, 1371
BmrI	ACTGGG	1 cut(s)	697
BmsI	GCATC	1 cut(s)	595
BmtI	GCTAGC	1 cut(s)	878
BmuI	ACTGGG	1 cut(s)	697
Bpu1102I	GCTNAGC	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	708, 709, 1147, 1273
Bse1I	ACTGG	2 cut(s)	196, 703
Bse3DI	GCAATG	2 cut(s)	405, 726
BseGI	GGATG	5 cut(s)	15, 251, 679, 923, 1137
BseLI	CCNNNNNNNGG	4 cut(s)	708, 709, 1147, 1273
BseMI	GCAATG	2 cut(s)	405, 726
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	196, 703
BseRI	GAGGAG	3 cut(s)	119, 851, 1160
BseXI	GCAGC	7 cut(s)	50, 62, 332, 595, 598, 703, 1264
BseYI	CCCAGC	3 cut(s)	239, 545, 754
BsgI	GTGCAG	1 cut(s)	1060
BshFI	GGCC	4 cut(s)	588, 1088, 1108, 1317
BshNI	GGYRCC	1 cut(s)	758
BsiHKAI	GWGCWC	1 cut(s)	1259
BsiHKCI	CYCGRG	1 cut(s)	56
BslFI	GGGAC	6 cut(s)	230, 280, 402, 754, 1114, 1370
BslI	CCNNNNNNNGG	4 cut(s)	708, 709, 1147, 1273
BsmAI	GTCTC	2 cut(s)	909, 970
BsmBI	CGTCTC	1 cut(s)	909
BsmFI	GGGAC	6 cut(s)	230, 280, 402, 754, 1114, 1370
BsmI	GAATGC	2 cut(s)	84, 1179
BsnI	GGCC	4 cut(s)	588, 1088, 1108, 1317
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	827, 1259
Bsp1407I	TGTACA	2 cut(s)	789, 1212
Bsp143I	GATC	3 cut(s)	79, 248, 278
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	6 cut(s)	41, 452, 971, 1177, 1294, 1367
BspANI	GGCC	4 cut(s)	588, 1088, 1108, 1317
BspCNI	CTCAG	1 cut(s)	54
BspHI	TCATGA	3 cut(s)	144, 1116, 1164
BspLI	GGNNCC	5 cut(s)	171, 589, 760, 1130, 1371
BspMI	ACCTGC	1 cut(s)	908
BspOI	GCTAGC	1 cut(s)	878
BspPI	GGATC	2 cut(s)	256, 286
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	405, 726
BsrGI	TGTACA	2 cut(s)	789, 1212
BsrI	ACTGG	2 cut(s)	196, 703
BssMI	GATC	3 cut(s)	79, 248, 278
Bst4CI	ACNGT	3 cut(s)	483, 768, 851
Bst6I	CTCTTC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstAUI	TGTACA	2 cut(s)	789, 1212
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	616, 876, 1090
BstDEI	CTNAG	4 cut(s)	62, 341, 504, 929
BstF5I	GGATG	5 cut(s)	15, 251, 679, 923, 1137
BstKTI	GATC	3 cut(s)	82, 251, 281
BstMAI	GTCTC	2 cut(s)	909, 970
BstMBI	GATC	3 cut(s)	79, 248, 278
BstMWI	GCNNNNNNNGC	7 cut(s)	47, 107, 484, 542, 722, 968, 1294
BstNSI	RCATGY	4 cut(s)	315, 618, 949, 1042
BstSFI	CTRYAG	1 cut(s)	537
BstSNI	TACGTA	1 cut(s)	321
BstV1I	GCAGC	7 cut(s)	50, 62, 332, 595, 598, 703, 1264
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	1338
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	588, 1088, 1108, 1317
BtsCI	GGATG	5 cut(s)	15, 251, 679, 923, 1137
BtsIMutI	CAGTG	1 cut(s)	488
BveI	ACCTGC	1 cut(s)	908
Cac8I	GCNNGC	3 cut(s)	616, 876, 1090
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	3 cut(s)	144, 1116, 1164
Cfr13I	GGNCC	3 cut(s)	170, 587, 1128
CseI	GACGC	2 cut(s)	399, 891
Csp6I	GTAC	3 cut(s)	322, 790, 1213
CviQI	GTAC	3 cut(s)	322, 790, 1213
DdeI	CTNAG	4 cut(s)	62, 341, 504, 929
DpnI	GATC	3 cut(s)	81, 250, 280
DpnII	GATC	3 cut(s)	79, 248, 278
EaeI	YGGCCR	2 cut(s)	1106, 1315
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	467
Eco105I	TACGTA	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	1088
Eco24I	GRGCYC	1 cut(s)	827
Eco47I	GGWCC	2 cut(s)	170, 1128
Eco88I	CYCGRG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	1128
EcoT22I	ATGCAT	1 cut(s)	1228
EcoT38I	GRGCYC	1 cut(s)	827
Esp3I	CGTCTC	1 cut(s)	909
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	6 cut(s)	230, 280, 402, 754, 1114, 1370
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	9 cut(s)	39, 51, 346, 609, 612, 717, 972, 1278, 1295
FokI	GGATG	5 cut(s)	2, 238, 686, 910, 1124
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	9 cut(s)	39, 51, 346, 609, 612, 717, 972, 1278, 1295
FspBI	CTAG	2 cut(s)	284, 875
GluI	GCNGC	9 cut(s)	39, 51, 346, 609, 612, 717, 972, 1278, 1295
GsaI	CCCAGC	3 cut(s)	243, 549, 758
HaeIII	GGCC	4 cut(s)	588, 1088, 1108, 1317
HgaI	GACGC	2 cut(s)	399, 891
HindIII	AAGCTT	1 cut(s)	1000
HinfI	GANTC	4 cut(s)	437, 559, 811, 841
HphI	GGTGA	5 cut(s)	167, 343, 671, 1228, 1315
Hpy166II	GTNNAC	2 cut(s)	181, 792
Hpy188I	TCNGA	4 cut(s)	303, 736, 1021, 1312
Hpy188III	TCNNGA	9 cut(s)	56, 115, 145, 265, 365, 808, 1006, 1117, 1165
Hpy8I	GTNNAC	2 cut(s)	181, 792
HpyAV	CCTTC	5 cut(s)	29, 121, 773, 989, 1026
HpyCH4III	ACNGT	3 cut(s)	483, 768, 851
HpyCH4IV	ACGT	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	7 cut(s)	47, 107, 484, 542, 722, 968, 1294
HpyF3I	CTNAG	4 cut(s)	62, 341, 504, 929
HpySE526I	ACGT	1 cut(s)	320
Kzo9I	GATC	3 cut(s)	79, 248, 278
LmnI	GCTCC	2 cut(s)	1035, 1369
Lsp1109I	GCAGC	7 cut(s)	50, 62, 332, 595, 598, 703, 1264
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	284, 875
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	994
MalI	GATC	3 cut(s)	81, 250, 280
MboI	GATC	3 cut(s)	79, 248, 278
MboII	GAAGA	4 cut(s)	316, 554, 1165, 1346
MfeI	CAATTG	2 cut(s)	270, 627
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	827, 1259
MlsI	TGGCCA	2 cut(s)	1108, 1317
MluCI	AATT	7 cut(s)	121, 270, 531, 627, 639, 664, 744
MluNI	TGGCCA	2 cut(s)	1108, 1317
MlyI	GAGTC	2 cut(s)	446, 805
MmeI	TCCRAC	2 cut(s)	256, 281
Mox20I	TGGCCA	2 cut(s)	1108, 1317
Mph1103I	ATGCAT	1 cut(s)	1228
MroXI	GAANNNNTTC	1 cut(s)	1172
MscI	TGGCCA	2 cut(s)	1108, 1317
MseI	TTAA	2 cut(s)	1221, 1376
MslI	CAYNNNNRTG	4 cut(s)	1121, 1163, 1196, 1241
Msp20I	TGGCCA	2 cut(s)	1108, 1317
MspA1I	CMGCKG	1 cut(s)	41
MunI	CAATTG	2 cut(s)	270, 627
Mva1269I	GAATGC	2 cut(s)	84, 1179
MwoI	GCNNNNNNNGC	7 cut(s)	47, 107, 484, 542, 722, 968, 1294
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	3 cut(s)	79, 248, 278
NheI	GCTAGC	1 cut(s)	874
NlaIV	GGNNCC	5 cut(s)	171, 589, 760, 1130, 1371
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	994
NsiI	ATGCAT	1 cut(s)	1228
NspI	RCATGY	4 cut(s)	315, 618, 949, 1042
PaeI	GCATGC	1 cut(s)	618
PaeR7I	CTCGAG	1 cut(s)	56
PagI	TCATGA	3 cut(s)	144, 1116, 1164
PceI	AGGCCT	1 cut(s)	1088
PctI	GAATGC	2 cut(s)	84, 1179
PdmI	GAANNNNTTC	1 cut(s)	1172
PfeI	GAWTC	2 cut(s)	559, 841
PkrI	GCNGC	9 cut(s)	40, 52, 347, 610, 613, 718, 973, 1279, 1296
PleI	GAGTC	2 cut(s)	445, 805
PpsI	GAGTC	2 cut(s)	445, 805
Ppu21I	YACGTR	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	1128
PsiI	TTATAA	1 cut(s)	644
Psp5II	RGGWCCY	1 cut(s)	1128
PspFI	CCCAGC	3 cut(s)	239, 545, 754
PspN4I	GGNNCC	5 cut(s)	171, 589, 760, 1130, 1371
PspPI	GGNCC	3 cut(s)	170, 587, 1128
PspPPI	RGGWCCY	1 cut(s)	1128
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	3 cut(s)	323, 791, 1214
RsaNI	GTAC	3 cut(s)	322, 790, 1213
RseI	CAYNNNNRTG	4 cut(s)	1121, 1163, 1196, 1241
SaqAI	TTAA	2 cut(s)	1221, 1376
SatI	GCNGC	9 cut(s)	39, 51, 346, 609, 612, 717, 972, 1278, 1295
Sau3AI	GATC	3 cut(s)	79, 248, 278
Sau96I	GGNCC	3 cut(s)	170, 587, 1128
SchI	GAGTC	2 cut(s)	446, 805
SduI	GDGCHC	2 cut(s)	827, 1259
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	1 cut(s)	537
Sfr274I	CTCGAG	1 cut(s)	56
SinI	GGWCC	2 cut(s)	170, 1128
SlaI	CTCGAG	1 cut(s)	56
SmiMI	CAYNNNNRTG	4 cut(s)	1121, 1163, 1196, 1241
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SnaBI	TACGTA	1 cut(s)	321
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	7 cut(s)	121, 270, 531, 627, 639, 664, 744
SseBI	AGGCCT	1 cut(s)	1088
SsiI	CCGC	6 cut(s)	41, 452, 971, 1177, 1294, 1367
SspI	AATATT	1 cut(s)	1101
SspMI	CTAG	2 cut(s)	284, 875
StuI	AGGCCT	1 cut(s)	1088
TaaI	ACNGT	3 cut(s)	483, 768, 851
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	4 cut(s)	57, 474, 881, 1259
TasI	AATT	7 cut(s)	121, 270, 531, 627, 639, 664, 744
TatI	WGTACW	2 cut(s)	789, 1212
TauI	GCSGC	2 cut(s)	974, 1297
TfiI	GAWTC	2 cut(s)	559, 841
Tru1I	TTAA	2 cut(s)	1221, 1376
Tru9I	TTAA	2 cut(s)	1221, 1376
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	994
TseI	GCWGC	7 cut(s)	38, 50, 345, 608, 611, 716, 1277
Tsp45I	GTSAC	1 cut(s)	994
TspDTI	ATGAA	7 cut(s)	77, 480, 844, 859, 912, 1133, 1181
TspRI	CASTG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	170, 1128
XceI	RCATGY	4 cut(s)	315, 618, 949, 1042
XhoI	CTCGAG	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	1172
XspI	CTAG	2 cut(s)	284, 875
Zsp2I	ATGCAT	1 cut(s)	1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.