Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013892

Physical Location & Seq

Genomic Coordinates Reverse (-)

12486656 .. 12491028

Gene Structure 4373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G128400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAGTTCTTCTACTTCCTTCTGTTTGGGGCTCTCTCTGCGGTTGTGGCAGCTTTGGAGCTGAGCAAGAACAACAAAGATCGCATTCATACTTCCTCTGTTTTCAATGATTTCAAGAACAACTACCTCCTCATCTACTCTCTCATGATGGCCGGGGATTGGTTGCAGGGTCCATATGTGTACTACCTCTACAGCCAGTATGGGTTCAGCAAGGGGGATATTGGACAGCTTTTTATTGCTGGGTTTGGGTCATCCATGTTGTTTGGGACAGTTGTGGGATCTCTAGCTGACAAACAGGGTCGGAAGAGGGCGTGTATTACGTACTGCATCACTTACATTCTAAGCTGCTTCACCAAACATTTTCCTGACTACAAGGTTTTACTGTTGGGACGCATATTGGGAGGCATTGCCACATCTCTACTTTTTTCAGCTTTTGAGTCTTGGCTTGTTGCAGAACACAATAAGAGGGGCTTTGAGCAGCAGTGGCTTTCATTAACATTCTCTAAGGCTATTTTTCTTGGCAATGGTCTAGTTGCCATAGTAGCTGGGCTACTTGGGAATCTTCTGGTAGATACTTTGGGATTTGGCCCAGTTGCTCCATTTGATGCTGCTGCATGCTTTTTGGCAATTGGCATGGCAATTATATTGGCATCATGGGGTGAAAATTATGGAGACTCTTCAGAAAACAAGAACTTGATCACCCAGTTCAGGGGTGCTGCTGTAGCCATTGCTTCCGATGAGAAGATTGCTTTGCTTGGTGCCATACAGTCCCTATTTGAAGGCTCAATGTATACCTTTGTGTTCCTCTGGACTCCTGCTTTGAGCCCAAATGATGAGGAGATTCCACATGGTTTCATTTTTGCAACATTCATGCTAGCCTCAATGTTGGGAAGCTCTTTAGCATCTCGGCTGATGGCAGCTTCATCCCCCAAAGTCGAGAGCTATATGCAGATTGTATTTGTAGTCTCTGCGGCTTCGCTTCTGCTTCCCATTGTGACAACTTTATTCATTGCACCTTCCAATGTGAAAGGTGGGAGCATGTCATTATCAGGGTATACTCAGCTCATTGGCTTCTGCATATTTGAGGCCTGTGTGGGCATATTCTGGCCATCCATCATGAAAATGAGGTCCCAATACATCCCAGAGGAGGCAAGAAGCACCATCATGAACTTTTTCCGCATTCCTCTCAACATCTTTGTGTGCGTTGTGCTGTACAATGTTGATGCATTTCCCATCACCATCATGTTTGGTATGTGCTCGATTTTCCTCTCTGTGGCTGCTGTATTGCAGAGGCGGCTTATGGTGATTGCTGATGGCCCGAAATCAAAACCAGAAGAATGGACAACACATGAGAGGGACACAGAAGCAGAGCCATTAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0038023 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051716 GO:0060089 GO:0065007 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

462

Amino Acids

50.71

Weight (kDa)

5.65

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64650 AT1G64650
fragaria_vesca	FvH4_5g11030 FvH4_5g11030 FvH4_5g11030
malus_domestica	MD06G1117300.v1.1
prunus_persica	Prupe.5G128400_v2.0.a1 Prupe.5G128400_v2.0.a1
pyrus_communis	pycom06g10920
rosa_chinensis	RchiOBHm_Chr7g0186771
rosa_laevigata	RLG00000004817
rosa_multiflora	Rmu_sc0009734.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267840
rosa_rugosa	Rorug06G0476500
rosa_samantha	Rh7BG080500 Rh7CG083500
rosa_wichuraiana	Rw7G007240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AccI	GTMKAC	2 cut(s)	791, 1055
AciI	CCGC	4 cut(s)	41, 971, 1177, 1294
AclWI	GGATC	1 cut(s)	286
AcoI	YGGCCR	2 cut(s)	150, 1106
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	3 cut(s)	182, 323, 1214
AfiI	CCNNNNNNNGG	5 cut(s)	159, 708, 709, 1147, 1273
AgsI	TTSAA	3 cut(s)	106, 115, 779
Alw21I	GWGCWC	1 cut(s)	1259
Alw26I	GTCTC	2 cut(s)	666, 970
AlwI	GGATC	1 cut(s)	286
AoxI	GGCC	5 cut(s)	150, 586, 1086, 1106, 1315
ApeKI	GCWGC	8 cut(s)	50, 345, 478, 608, 611, 716, 917, 1277
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
Asp700I	GAANNNNTTC	1 cut(s)	1172
AspS9I	GGNCC	4 cut(s)	170, 587, 1128, 1316
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	5 cut(s)	343, 671, 691, 1228, 1315
AsuNHI	GCTAGC	1 cut(s)	874
AvaII	GGWCC	2 cut(s)	170, 1128
BalI	TGGCCA	1 cut(s)	1108
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	34, 827
Bbv12I	GWGCWC	1 cut(s)	1259
BbvI	GCAGC	8 cut(s)	62, 332, 490, 595, 598, 703, 929, 1264
BccI	CCATC	8 cut(s)	142, 907, 1117, 1121, 1169, 1241, 1247, 1307
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	666, 970
BfaI	CTAG	3 cut(s)	284, 530, 875
BfmI	CTRYAG	2 cut(s)	190, 720
BlpI	GCTNAGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	2 cut(s)	170, 1128
BmgT120I	GGNCC	4 cut(s)	170, 587, 1128, 1316
BmiI	GGNNCC	3 cut(s)	171, 760, 1130
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	2 cut(s)	584, 697
BmsI	GCATC	5 cut(s)	336, 595, 659, 911, 1213
BmtI	GCTAGC	1 cut(s)	878
BmuI	ACTGGG	2 cut(s)	584, 697
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	154
BsaAI	YACGTR	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	5 cut(s)	159, 708, 709, 1147, 1273
Bse1I	ACTGG	3 cut(s)	196, 590, 703
Bse3DI	GCAATG	4 cut(s)	405, 529, 726, 1008
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	4 cut(s)	251, 923, 1109, 1137
BseLI	CCNNNNNNNGG	5 cut(s)	159, 708, 709, 1147, 1273
BseMI	GCAATG	4 cut(s)	405, 529, 726, 1008
BseMII	CTCAG	2 cut(s)	53, 1073
BseNI	ACTGG	3 cut(s)	196, 590, 703
BseRI	GAGGAG	3 cut(s)	119, 851, 1160
BseXI	GCAGC	8 cut(s)	62, 332, 490, 595, 598, 703, 929, 1264
BseYI	CCCAGC	2 cut(s)	239, 545
BshFI	GGCC	5 cut(s)	152, 588, 1088, 1108, 1317
BshNI	GGYRCC	1 cut(s)	758
BsiHKAI	GWGCWC	1 cut(s)	1259
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	5 cut(s)	280, 402, 754, 1114, 1370
BslI	CCNNNNNNNGG	5 cut(s)	159, 708, 709, 1147, 1273
BsmAI	GTCTC	2 cut(s)	666, 970
BsmFI	GGGAC	5 cut(s)	280, 402, 754, 1114, 1370
BsmI	GAATGC	2 cut(s)	84, 1179
BsnI	GGCC	5 cut(s)	152, 588, 1088, 1108, 1317
Bsp1286I	GDGCHC	3 cut(s)	34, 827, 1259
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp143I	GATC	3 cut(s)	79, 278, 696
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	4 cut(s)	41, 971, 1177, 1294
BspANI	GGCC	5 cut(s)	152, 588, 1088, 1108, 1317
BspCNI	CTCAG	2 cut(s)	54, 1072
BspHI	TCATGA	3 cut(s)	144, 1116, 1164
BspLI	GGNNCC	3 cut(s)	171, 760, 1130
BspOI	GCTAGC	1 cut(s)	878
BspPI	GGATC	1 cut(s)	286
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	4 cut(s)	405, 529, 726, 1008
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	3 cut(s)	196, 590, 703
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	79, 278, 696
BssNAI	GTATAC	2 cut(s)	792, 1056
Bst1107I	GTATAC	2 cut(s)	792, 1056
Bst4CI	ACNGT	3 cut(s)	271, 384, 768
Bst6I	CTCTTC	2 cut(s)	299, 682
BstAUI	TGTACA	1 cut(s)	1212
BstBAI	YACGTR	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	616, 876
BstDEI	CTNAG	4 cut(s)	62, 341, 504, 1059
BstF5I	GGATG	4 cut(s)	251, 923, 1109, 1137
BstKTI	GATC	3 cut(s)	82, 281, 699
BstMAI	GTCTC	2 cut(s)	666, 970
BstMBI	GATC	3 cut(s)	79, 278, 696
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 47, 484, 542, 722, 1294
BstNSI	RCATGY	2 cut(s)	618, 1042
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	2 cut(s)	190, 720
BstSNI	TACGTA	1 cut(s)	321
BstV1I	GCAGC	8 cut(s)	62, 332, 490, 595, 598, 703, 929, 1264
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	1338
BstYI	RGATCY	1 cut(s)	278
BstZ17I	GTATAC	2 cut(s)	792, 1056
BsuRI	GGCC	5 cut(s)	152, 588, 1088, 1108, 1317
BtsCI	GGATG	4 cut(s)	251, 923, 1109, 1137
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	2 cut(s)	616, 876
CciI	TCATGA	3 cut(s)	144, 1116, 1164
Cfr13I	GGNCC	4 cut(s)	170, 587, 1128, 1316
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	3 cut(s)	181, 322, 1213
CviQI	GTAC	3 cut(s)	181, 322, 1213
DdeI	CTNAG	4 cut(s)	62, 341, 504, 1059
DpnI	GATC	3 cut(s)	81, 280, 698
DpnII	GATC	3 cut(s)	79, 278, 696
EaeI	YGGCCR	2 cut(s)	150, 1106
Eam1104I	CTCTTC	2 cut(s)	299, 682
EarI	CTCTTC	2 cut(s)	299, 682
Eco105I	TACGTA	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	1088
Eco24I	GRGCYC	2 cut(s)	34, 827
Eco47I	GGWCC	2 cut(s)	170, 1128
Eco57I	CTGAAG	1 cut(s)	663
EcoO109I	RGGNCCY	1 cut(s)	1128
EcoT22I	ATGCAT	1 cut(s)	1228
EcoT38I	GRGCYC	2 cut(s)	34, 827
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	5 cut(s)	280, 402, 754, 1114, 1370
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	696
FblI	GTMKAC	2 cut(s)	791, 1055
FokI	GGATG	4 cut(s)	238, 910, 1096, 1124
FriOI	GRGCYC	2 cut(s)	34, 827
FspBI	CTAG	3 cut(s)	284, 530, 875
GsaI	CCCAGC	2 cut(s)	243, 549
HaeIII	GGCC	5 cut(s)	152, 588, 1088, 1108, 1317
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	399
HinfI	GANTC	5 cut(s)	437, 559, 674, 811, 841
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	5 cut(s)	343, 671, 691, 1228, 1315
Hpy166II	GTNNAC	3 cut(s)	181, 792, 1056
Hpy188I	TCNGA	3 cut(s)	303, 682, 736
Hpy188III	TCNNGA	7 cut(s)	115, 145, 365, 808, 937, 1117, 1165
Hpy8I	GTNNAC	3 cut(s)	181, 792, 1056
HpyAV	CCTTC	3 cut(s)	29, 773, 1026
HpyCH4III	ACNGT	3 cut(s)	271, 384, 768
HpyCH4IV	ACGT	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 47, 484, 542, 722, 1294
HpyF3I	CTNAG	4 cut(s)	62, 341, 504, 1059
HpySE526I	ACGT	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	3 cut(s)	79, 278, 696
LmnI	GCTCC	3 cut(s)	58, 601, 1035
Lsp1109I	GCAGC	8 cut(s)	62, 332, 490, 595, 598, 703, 929, 1264
LweI	GCATC	5 cut(s)	336, 595, 659, 911, 1213
MaeI	CTAG	3 cut(s)	284, 530, 875
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	994
MalI	GATC	3 cut(s)	81, 280, 698
MboI	GATC	3 cut(s)	79, 278, 696
MboII	GAAGA	5 cut(s)	316, 554, 669, 754, 1346
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	3 cut(s)	34, 827, 1259
MlsI	TGGCCA	1 cut(s)	1108
MluCI	AATT	3 cut(s)	627, 639, 664
MluNI	TGGCCA	1 cut(s)	1108
MlyI	GAGTC	3 cut(s)	446, 668, 805
MmeI	TCCRAC	1 cut(s)	281
Mox20I	TGGCCA	1 cut(s)	1108
Mph1103I	ATGCAT	1 cut(s)	1228
MroXI	GAANNNNTTC	1 cut(s)	1172
MscI	TGGCCA	1 cut(s)	1108
MseI	TTAA	2 cut(s)	494, 1376
MslI	CAYNNNNRTG	4 cut(s)	1121, 1163, 1196, 1241
Msp20I	TGGCCA	1 cut(s)	1108
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	154
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	2 cut(s)	84, 1179
MwoI	GCNNNNNNNGC	6 cut(s)	38, 47, 484, 542, 722, 1294
NciI	CCSGG	1 cut(s)	154
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	3 cut(s)	79, 278, 696
NheI	GCTAGC	1 cut(s)	874
NlaIV	GGNNCC	3 cut(s)	171, 760, 1130
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	1 cut(s)	994
NsiI	ATGCAT	1 cut(s)	1228
NspI	RCATGY	2 cut(s)	618, 1042
PaeI	GCATGC	1 cut(s)	618
PagI	TCATGA	3 cut(s)	144, 1116, 1164
PceI	AGGCCT	1 cut(s)	1088
PctI	GAATGC	2 cut(s)	84, 1179
PdmI	GAANNNNTTC	1 cut(s)	1172
PfeI	GAWTC	2 cut(s)	559, 841
PleI	GAGTC	3 cut(s)	445, 668, 805
PpsI	GAGTC	3 cut(s)	445, 668, 805
Ppu21I	YACGTR	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	1128
Psp5II	RGGWCCY	1 cut(s)	1128
PspFI	CCCAGC	2 cut(s)	239, 545
PspN4I	GGNNCC	3 cut(s)	171, 760, 1130
PspPI	GGNCC	4 cut(s)	170, 587, 1128, 1316
PspPPI	RGGWCCY	1 cut(s)	1128
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	3 cut(s)	182, 323, 1214
RsaNI	GTAC	3 cut(s)	181, 322, 1213
RseI	CAYNNNNRTG	4 cut(s)	1121, 1163, 1196, 1241
SaqAI	TTAA	2 cut(s)	494, 1376
Sau3AI	GATC	3 cut(s)	79, 278, 696
Sau96I	GGNCC	4 cut(s)	170, 587, 1128, 1316
SchI	GAGTC	3 cut(s)	446, 668, 805
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	3 cut(s)	34, 827, 1259
SfaNI	GCATC	5 cut(s)	336, 595, 659, 911, 1213
SfcI	CTRYAG	2 cut(s)	190, 720
SinI	GGWCC	2 cut(s)	170, 1128
SmiMI	CAYNNNNRTG	4 cut(s)	1121, 1163, 1196, 1241
SnaBI	TACGTA	1 cut(s)	321
SphI	GCATGC	1 cut(s)	618
Sse9I	AATT	3 cut(s)	627, 639, 664
SseBI	AGGCCT	1 cut(s)	1088
SsiI	CCGC	4 cut(s)	41, 971, 1177, 1294
SspMI	CTAG	3 cut(s)	284, 530, 875
StuI	AGGCCT	1 cut(s)	1088
StyD4I	CCNGG	1 cut(s)	152
TaaI	ACNGT	3 cut(s)	271, 384, 768
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	2 cut(s)	936, 1259
TasI	AATT	3 cut(s)	627, 639, 664
TatI	WGTACW	2 cut(s)	180, 1212
TauI	GCSGC	2 cut(s)	974, 1297
TfiI	GAWTC	2 cut(s)	559, 841
Tru1I	TTAA	2 cut(s)	494, 1376
Tru9I	TTAA	2 cut(s)	494, 1376
TscAI	CASTG	1 cut(s)	488
TseFI	GTSAC	1 cut(s)	994
TseI	GCWGC	8 cut(s)	50, 345, 478, 608, 611, 716, 917, 1277
Tsp45I	GTSAC	1 cut(s)	994
TspDTI	ATGAA	8 cut(s)	77, 480, 844, 859, 912, 997, 1133, 1181
TspRI	CASTG	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	170, 1128
XceI	RCATGY	2 cut(s)	618, 1042
XmiI	GTMKAC	2 cut(s)	791, 1055
XmnI	GAANNNNTTC	1 cut(s)	1172
XspI	CTAG	3 cut(s)	284, 530, 875
Zsp2I	ATGCAT	1 cut(s)	1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.