Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013892

Physical Location & Seq

Genomic Coordinates Forward (+)

62777120 .. 62780186

Gene Structure 3067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004817

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGAGTTGTTCTACTTTCTTCTGTTTGGTGCTCTCTCGGCGGTGGTGGCAGCTTTGGAGCTGAGCAAGAGGAGCAAGGATCGCATTAGTACCTCCTCTGTTTTCACAGCCTTCAAGAACAACTATCTCCTCATCTATTCTCTTATGATGGCTGGGGATTGGTTGCAGGGTCCATATGTTTACTACCTCTACAGCACATATGGATTTTCAAAGGGGGATATTGGACAACTCTTTATTGCTGGGTTTGGGTCGTCTATGTTGTTTGGAACAGTTGTAGGGTCACTAGCTGACAAACAGGGTCGGAAGAGGGCATGTGTTACATACTGCATAACTTACATCCTAAGTTGCTTCACCAAGCATTTTCCTGACTACAAAGTTTTAATGTTGGGACGTGTACTGGGAGGCATTGCAACTTCTCTGCTTTTTTCAGCTTTCGAGTCTTGGCTCGTTGCAGAACACAATAAGAGGGGCTTTGAGCAACAATGGCTGTCACTCACATTCTCTAAGGCCATTTTTCTTGGAAACGGTCTGATTGCTATTGTATCTGGGTTGTTGGGGAATCTTCTGGTAGATACTCTGGCATTAGGTCCAGTTGCTCCATTTGATGCCGCTGCCTGCATTTTGGCAATTGGCATGGCAATCATATTGGCAACATGGAGTGAAAACTATGGAGACTCATCAGATAACAAGAACTTGCTGTCCCAATTCCAGGGCGCTGCTATAGCCATTGCTTCTGATGAGAAAATCGCTTTGCTGGGTGCCATACAGTCCTTATTTGAAGGCTCAATGTATACCTTTGTGTTTCTCTGGACTCCCGCTTTGAGCCCAAATGATGAGGAGATCCCACATGGTTTCATTTTTGCGACATTCATGCTAGCGTCAATGTTGGGAAGCTCTATTGCATCTCGATTGATGGCCAGCTCAGCCCCCAGAGTCGAGAGCTACATGCAGATTGTATTTGCAGTTTCTGCAGCATCCCTTCTGTGTCCCATTGTGACAAGTTTCTTGATTGCACCTTCTAACGTGAAAGGTGGAGGCATCTCGTTCTCAGGGTATTTTCAGATTTTTGGCTTCTGCACATTTGAGGCCTGTGTGGGGATTTTCTGGCCATCTATCATGAAAATGAGGTCACAATACATCCCAGAGGAGGCACGAAGCACCATCATGAACTTCTTTCGCATTCCTCTCAACATCTTTGTGTGCATAGTGCTGTACAATGTTAATGCATTTCCCATCACCATCATGTTCGGTATGTGCTCGATTTTCCTCGGTACAGCTGCTGTGTTGCAGAGGCGGCTCTTTGTGATAACTGACGGCCATAAGTCAAAATCACAAGAATGGGAACCGATGGAGAGGGACACAGAAGCAGAGCCATTAAATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0009987 GO:0016020 GO:0019867 GO:0019899 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0038023 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051087 GO:0051117 GO:0051716 GO:0060089 GO:0065007 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_5

Protein Analysis

462

Amino Acids

50.63

Weight (kDa)

5.9

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_5	PF05631	4 - 358	2.7e-182	Sugar-tranasporters, 12 TM
MFS_1	PF07690	43 - 392	2.7e-16	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64650 AT1G64650
fragaria_vesca	FvH4_5g11030 FvH4_5g11030 FvH4_5g11030
malus_domestica	MD06G1117300.v1.1
prunus_persica	Prupe.5G128400_v2.0.a1 Prupe.5G128400_v2.0.a1
pyrus_communis	pycom06g10920
rosa_chinensis	RchiOBHm_Chr7g0186771
rosa_laevigata	RLG00000004817
rosa_multiflora	Rmu_sc0009734.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267840
rosa_rugosa	Rorug06G0476500
rosa_samantha	Rh7BG080500 Rh7CG083500
rosa_wichuraiana	Rw7G007240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	791
AciI	CCGC	4 cut(s)	41, 609, 816, 1294
AclWI	GGATC	2 cut(s)	87, 835
AcoI	YGGCCR	3 cut(s)	915, 1106, 1315
AfaI	GTAC	4 cut(s)	91, 396, 1214, 1273
AfiI	CCNNNNNNNGG	3 cut(s)	709, 1095, 1147
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	3 cut(s)	115, 210, 779
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	708
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	8 cut(s)	53, 61, 287, 431, 894, 921, 942, 1277
AluI	AGCT	8 cut(s)	53, 61, 287, 431, 894, 921, 942, 1277
Alw21I	GWGCWC	2 cut(s)	34, 1259
Alw26I	GTCTC	1 cut(s)	666
AlwI	GGATC	2 cut(s)	87, 835
AlwNI	CAGNNNCTG	2 cut(s)	968, 1280
AoxI	GGCC	5 cut(s)	507, 915, 1086, 1106, 1315
ApeKI	GCWGC	5 cut(s)	50, 611, 716, 971, 1277
ArsI	GACNNNNNNTTYG	2 cut(s)	802, 834
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	170, 587
AsuHPI	GGTGA	2 cut(s)	343, 1228
AsuNHI	GCTAGC	1 cut(s)	874
AvaII	GGWCC	2 cut(s)	170, 587
BalI	TGGCCA	2 cut(s)	917, 1108
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	827
Bbv12I	GWGCWC	2 cut(s)	34, 1259
BbvI	GCAGC	5 cut(s)	62, 598, 703, 983, 1264
BccI	CCATC	7 cut(s)	142, 907, 1117, 1169, 1241, 1247, 1342
BceAI	ACGGC	1 cut(s)	1330
BcgI	CGANNNNNNTGC	2 cut(s)	853, 887
BciT130I	CCWGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	2 cut(s)	284, 875
BfmI	CTRYAG	3 cut(s)	190, 720, 969
BfoI	RGCGCY	1 cut(s)	717
BisI	GCNGC	7 cut(s)	51, 609, 612, 717, 972, 1278, 1295
BlpI	GCTNAGC	2 cut(s)	62, 922
BlsI	GCNGC	7 cut(s)	52, 610, 613, 718, 973, 1279, 1296
Bme1390I	CCNGG	1 cut(s)	710
Bme18I	GGWCC	2 cut(s)	170, 587
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	170, 587
BmiI	GGNNCC	3 cut(s)	171, 760, 1344
BmrFI	CCNGG	1 cut(s)	710
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	4 cut(s)	595, 911, 983, 1047
BmtI	GCTAGC	1 cut(s)	878
BmuI	ACTGGG	1 cut(s)	407
Bpu1102I	GCTNAGC	2 cut(s)	62, 922
BsaJI	CCNNGG	2 cut(s)	709, 1267
Bsc4I	CCNNNNNNNGG	3 cut(s)	709, 1095, 1147
Bse1I	ACTGG	2 cut(s)	402, 590
Bse3DI	GCAATG	2 cut(s)	405, 726
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	2 cut(s)	709, 1267
BseGI	GGATG	3 cut(s)	336, 974, 1137
BseLI	CCNNNNNNNGG	3 cut(s)	709, 1095, 1147
BseMI	GCAATG	2 cut(s)	405, 726
BseMII	CTCAG	3 cut(s)	53, 936, 1062
BseNI	ACTGG	2 cut(s)	402, 590
BseRI	GAGGAG	5 cut(s)	85, 85, 119, 851, 1160
BseXI	GCAGC	5 cut(s)	62, 598, 703, 983, 1264
BseYI	CCCAGC	3 cut(s)	152, 239, 754
BsgI	GTGCAG	1 cut(s)	1060
BshFI	GGCC	5 cut(s)	509, 917, 1088, 1108, 1317
BshNI	GGYRCC	1 cut(s)	758
BsiHKAI	GWGCWC	2 cut(s)	34, 1259
BslFI	GGGAC	4 cut(s)	402, 685, 972, 1370
BslI	CCNNNNNNNGG	3 cut(s)	709, 1095, 1147
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	4 cut(s)	402, 685, 972, 1370
BsmI	GAATGC	1 cut(s)	1179
BsnI	GGCC	5 cut(s)	509, 917, 1088, 1108, 1317
Bsp1286I	GDGCHC	3 cut(s)	34, 827, 1259
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp143I	GATC	2 cut(s)	79, 840
Bsp1720I	GCTNAGC	2 cut(s)	62, 922
BspACI	CCGC	4 cut(s)	41, 609, 816, 1294
BspANI	GGCC	5 cut(s)	509, 917, 1088, 1108, 1317
BspCNI	CTCAG	3 cut(s)	54, 935, 1061
BspHI	TCATGA	2 cut(s)	1116, 1164
BspLI	GGNNCC	3 cut(s)	171, 760, 1344
BspMAI	CTGCAG	1 cut(s)	973
BspOI	GCTAGC	1 cut(s)	878
BspPI	GGATC	2 cut(s)	87, 835
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	2 cut(s)	405, 726
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	2 cut(s)	402, 590
BssECI	CCNNGG	2 cut(s)	709, 1267
BssMI	GATC	2 cut(s)	79, 840
BssNAI	GTATAC	1 cut(s)	792
Bst1107I	GTATAC	1 cut(s)	792
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	271, 527, 768
Bst6I	CTCTTC	1 cut(s)	299
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstAUI	TGTACA	1 cut(s)	1212
BstC8I	GCNNGC	3 cut(s)	616, 876, 919
BstDEI	CTNAG	5 cut(s)	62, 341, 504, 922, 1048
BstF5I	GGATG	3 cut(s)	336, 974, 1137
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	2 cut(s)	82, 843
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	2 cut(s)	79, 840
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 47, 72, 81, 484, 722, 923, 968, 1294
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	2 cut(s)	315, 949
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	3 cut(s)	190, 720, 969
BstV1I	GCAGC	5 cut(s)	62, 598, 703, 983, 1264
BstX2I	RGATCY	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	840
BstZ17I	GTATAC	1 cut(s)	792
BsuRI	GGCC	5 cut(s)	509, 917, 1088, 1108, 1317
BtrI	CACGTC	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	336, 974, 1137
Cac8I	GCNNGC	3 cut(s)	616, 876, 919
CaiI	CAGNNNCTG	2 cut(s)	968, 1280
CciI	TCATGA	2 cut(s)	1116, 1164
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	2 cut(s)	170, 587
CseI	GACGC	1 cut(s)	867
Csp6I	GTAC	4 cut(s)	90, 395, 1213, 1272
CviAII	CATG	9 cut(s)	312, 634, 654, 848, 871, 946, 1117, 1165, 1243
CviQI	GTAC	4 cut(s)	90, 395, 1213, 1272
DdeI	CTNAG	5 cut(s)	62, 341, 504, 922, 1048
DpnI	GATC	2 cut(s)	81, 842
DpnII	GATC	2 cut(s)	79, 840
EaeI	YGGCCR	3 cut(s)	915, 1106, 1315
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
Eco147I	AGGCCT	1 cut(s)	1088
Eco24I	GRGCYC	1 cut(s)	827
Eco47I	GGWCC	2 cut(s)	170, 587
EcoRII	CCWGG	1 cut(s)	708
EcoT22I	ATGCAT	1 cut(s)	1228
EcoT38I	GRGCYC	1 cut(s)	827
FaeI	CATG	9 cut(s)	315, 637, 657, 851, 874, 949, 1120, 1168, 1246
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	4 cut(s)	402, 685, 972, 1370
FatI	CATG	9 cut(s)	311, 633, 653, 847, 870, 945, 1116, 1164, 1242
FauI	CCCGC	1 cut(s)	823
FauNDI	CATATG	2 cut(s)	175, 199
FblI	GTMKAC	1 cut(s)	791
Fnu4HI	GCNGC	7 cut(s)	51, 609, 612, 717, 972, 1278, 1295
FokI	GGATG	3 cut(s)	323, 961, 1124
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	7 cut(s)	51, 609, 612, 717, 972, 1278, 1295
FspBI	CTAG	2 cut(s)	284, 875
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	7 cut(s)	51, 609, 612, 717, 972, 1278, 1295
GsaI	CCCAGC	3 cut(s)	156, 243, 758
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	5 cut(s)	509, 917, 1088, 1108, 1317
HgaI	GACGC	1 cut(s)	867
HhaI	GCGC	1 cut(s)	716
Hin1II	CATG	9 cut(s)	315, 637, 657, 851, 874, 949, 1120, 1168, 1246
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HinfI	GANTC	5 cut(s)	437, 559, 674, 811, 933
HphI	GGTGA	2 cut(s)	343, 1228
Hpy166II	GTNNAC	3 cut(s)	181, 395, 792
Hpy188I	TCNGA	5 cut(s)	303, 531, 682, 736, 1062
Hpy188III	TCNNGA	8 cut(s)	115, 365, 808, 906, 937, 1006, 1117, 1165
Hpy8I	GTNNAC	3 cut(s)	181, 395, 792
HpyAV	CCTTC	4 cut(s)	121, 773, 989, 1026
HpyCH4III	ACNGT	3 cut(s)	271, 527, 768
HpyCH4IV	ACGT	2 cut(s)	391, 1023
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 47, 72, 81, 484, 722, 923, 968, 1294
HpyF3I	CTNAG	5 cut(s)	62, 341, 504, 922, 1048
HpySE526I	ACGT	2 cut(s)	391, 1023
Hsp92II	CATG	9 cut(s)	315, 637, 657, 851, 874, 949, 1120, 1168, 1246
HspAI	GCGC	1 cut(s)	714
Kzo9I	GATC	2 cut(s)	79, 840
LmnI	GCTCC	3 cut(s)	58, 72, 601
Lsp1109I	GCAGC	5 cut(s)	62, 598, 703, 983, 1264
LweI	GCATC	4 cut(s)	595, 911, 983, 1047
MaeI	CTAG	2 cut(s)	284, 875
MaeII	ACGT	2 cut(s)	391, 1023
MaeIII	GTNAC	5 cut(s)	279, 316, 489, 994, 1128
MalI	GATC	2 cut(s)	81, 842
MboI	GATC	2 cut(s)	79, 840
MboII	GAAGA	3 cut(s)	11, 316, 554
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	1 cut(s)	840
MhlI	GDGCHC	3 cut(s)	34, 827, 1259
MlsI	TGGCCA	2 cut(s)	917, 1108
MluCI	AATT	2 cut(s)	627, 704
MluNI	TGGCCA	2 cut(s)	917, 1108
MlyI	GAGTC	4 cut(s)	446, 668, 805, 942
MmeI	TCCRAC	1 cut(s)	281
Mox20I	TGGCCA	2 cut(s)	917, 1108
Mph1103I	ATGCAT	1 cut(s)	1228
MscI	TGGCCA	2 cut(s)	917, 1108
MseI	TTAA	3 cut(s)	380, 1221, 1376
MslI	CAYNNNNRTG	5 cut(s)	1121, 1163, 1196, 1241, 1336
Msp20I	TGGCCA	2 cut(s)	917, 1108
MspA1I	CMGCKG	2 cut(s)	611, 1277
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	1179
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	9 cut(s)	38, 47, 72, 81, 484, 722, 923, 968, 1294
NdeI	CATATG	2 cut(s)	175, 199
NdeII	GATC	2 cut(s)	79, 840
NheI	GCTAGC	1 cut(s)	874
NlaIII	CATG	9 cut(s)	315, 637, 657, 851, 874, 949, 1120, 1168, 1246
NlaIV	GGNNCC	3 cut(s)	171, 760, 1344
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	4 cut(s)	279, 489, 994, 1128
NsiI	ATGCAT	1 cut(s)	1228
NspI	RCATGY	2 cut(s)	315, 949
PagI	TCATGA	2 cut(s)	1116, 1164
PceI	AGGCCT	1 cut(s)	1088
PctI	GAATGC	1 cut(s)	1179
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	7 cut(s)	52, 610, 613, 718, 973, 1279, 1296
PleI	GAGTC	4 cut(s)	445, 668, 805, 941
PpsI	GAGTC	4 cut(s)	445, 668, 805, 941
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	3 cut(s)	152, 239, 754
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	3 cut(s)	171, 760, 1344
PspPI	GGNCC	2 cut(s)	170, 587
PstI	CTGCAG	1 cut(s)	973
PstNI	CAGNNNCTG	2 cut(s)	968, 1280
PsuI	RGATCY	1 cut(s)	840
PvuII	CAGCTG	1 cut(s)	1277
RsaI	GTAC	4 cut(s)	91, 396, 1214, 1273
RsaNI	GTAC	4 cut(s)	90, 395, 1213, 1272
RseI	CAYNNNNRTG	5 cut(s)	1121, 1163, 1196, 1241, 1336
SaqAI	TTAA	3 cut(s)	380, 1221, 1376
SatI	GCNGC	7 cut(s)	51, 609, 612, 717, 972, 1278, 1295
Sau3AI	GATC	2 cut(s)	79, 840
Sau96I	GGNCC	2 cut(s)	170, 587
SchI	GAGTC	4 cut(s)	446, 668, 805, 942
ScrFI	CCNGG	1 cut(s)	710
SduI	GDGCHC	3 cut(s)	34, 827, 1259
SfaNI	GCATC	4 cut(s)	595, 911, 983, 1047
SfcI	CTRYAG	3 cut(s)	190, 720, 969
SinI	GGWCC	2 cut(s)	170, 587
SmiMI	CAYNNNNRTG	5 cut(s)	1121, 1163, 1196, 1241, 1336
Sse9I	AATT	2 cut(s)	627, 704
SseBI	AGGCCT	1 cut(s)	1088
SsiI	CCGC	4 cut(s)	41, 609, 816, 1294
SspMI	CTAG	2 cut(s)	284, 875
StuI	AGGCCT	1 cut(s)	1088
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	3 cut(s)	271, 527, 768
TaiI	ACGT	2 cut(s)	394, 1026
TaqI	TCGA	4 cut(s)	435, 907, 936, 1259
TasI	AATT	2 cut(s)	627, 704
TatI	WGTACW	2 cut(s)	394, 1212
TauI	GCSGC	2 cut(s)	611, 1297
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	3 cut(s)	380, 1221, 1376
Tru9I	TTAA	3 cut(s)	380, 1221, 1376
TseFI	GTSAC	4 cut(s)	279, 489, 994, 1128
TseI	GCWGC	5 cut(s)	50, 611, 716, 971, 1277
Tsp45I	GTSAC	4 cut(s)	279, 489, 994, 1128
TspDTI	ATGAA	4 cut(s)	844, 859, 1133, 1181
VpaK11BI	GGWCC	2 cut(s)	170, 587
XceI	RCATGY	2 cut(s)	315, 949
XmiI	GTMKAC	1 cut(s)	791
XspI	CTAG	2 cut(s)	284, 875
Zsp2I	ATGCAT	1 cut(s)	1228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.