Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011475

Physical Location & Seq

Genomic Coordinates Reverse (-)

25687323 .. 25697372

Gene Structure 10050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1118100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTCTTTTAGGTGTCTTGCTTTCCCGGAATTCTTATTTGTACATAAATTTTGTAGGTATGCTAGTGCAATAGAAAGAAACCCACATGATTATGATGCACTTTACAATTGGGCGCTGGTTCTTCAGGAAAGTGCAGATAACGTTAGTCCAGATTCTACTAATCCTTCTAAAGATGCTTTGCTTGAGGAGGCTTGCAGAAAGTATGATGAGGCTACCCGTCTGTGCCCAACACTTCATGATGCTTTCTATAATTGGGCTATTGCTATCTCTGATCGGGCAAAAATGCGTGGTCGTACAAAGGAAGCTGAAGAACTATGGAAGCAGGCTACAAAAAATTATGAAAAAGCAGTGTTGCTCAACTGGAACAGTCCCCAGGCACTTAACAACTGGGGACTTGCTCTGCAGGAACTCAGCGCAATTGTTCCTGCACGGGAAAAGCAAACAATTGTAAGATCTGCAATAAGTAAGTTCCGCGCAGCTATTCAGTTGCAGTTTGATTTCCATCGAGCAATTTACAATCTTGGAACCGTATTGTATGGATTGGCTGAGGACACACTAAGAACTGGGGGATTTGGACACCCCAAAGAAGTTTCACCTAATGAGTTGTATAGTCAATCGGCTATCTACATTGCAGCTGCTCATGCTTTGAAACCAAATTACAATGTTTACAGTAGTGCCTTGCGGCTCGTGCGATCCATGCTTCCTTTACCATATCTTAAAGTTGGATATCTTACTGCACCACCAGCGGGAAAACCAATTGCACCTCATAGTGATTGGAAACGATCGGAGTTTGTTTTGAATAATGAAGGGCTTCAACAGCAGGTTAGCAAAAATGAGCAAAAGCATGTACCCCAAGGCATCTCAAGCAGATCAGTAGAAGCAGCTATAAAAGTTGCTGTTCCCGATATCGTTTCTGTTTCAGCATGTGGAGATCTGACTTTACCACCTGGTGCTGGCCTCTGCATCGATACAATTCACGGACCCATCTATCTGGTTGCCGATTCATGGGAATCCCTTGATGGATGGCTTGATGCAATCCGTCTAGTTTACACCATCTATGCGCGGGGTAAGAGTGATGTTCTGGCAGGTATTGTAACAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016043 GO:0016049 GO:0016192 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

368

Amino Acids

40.8

Weight (kDa)

7.11

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41950
fragaria_vesca	FvH4_5g10960 FvH4_5g10960
malus_domestica	MD06G1118100.v1.1 MD14G1126200.v1.1
prunus_persica	Prupe.5G129200_v2.0.a1 Prupe.5G129200_v2.0.a1
pyrus_communis	pycom06g10980 pycom14g11090
rosa_chinensis	RchiOBHm_Chr7g0186861
rosa_laevigata	RLG00000004809
rosa_multiflora	Rmu_ssc0000024.1_g000032
rosa_roxburghii	Rroxscaffold_3G00267760
rosa_rugosa	Rorug06G0477500 Rorug06G0477500
rosa_samantha	Rh7AG083300 Rh7BG079500 Rh7CG084300 Rh7DG085200
rosa_wichuraiana	Rw7G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	811, 1076
AccII	CGCG	2 cut(s)	474, 1063
AciI	CCGC	4 cut(s)	472, 682, 746, 1063
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	1 cut(s)	687
AcsI	RAATTY	2 cut(s)	29, 47
AcuI	CTGAAG	2 cut(s)	107, 327
AdeI	CACNNNGTG	1 cut(s)	950
AfaI	GTAC	3 cut(s)	42, 295, 849
AfiI	CCNNNNNNNGG	3 cut(s)	746, 953, 1005
AgsI	TTSAA	3 cut(s)	649, 799, 815
AjnI	CCWGG	2 cut(s)	372, 946
AluBI	AGCT	4 cut(s)	305, 479, 635, 884
AluI	AGCT	4 cut(s)	305, 479, 635, 884
AlwI	GGATC	1 cut(s)	687
AoxI	GGCC	1 cut(s)	955
ApeKI	GCWGC	4 cut(s)	476, 632, 635, 881
ApoI	RAATTY	2 cut(s)	29, 47
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	4 cut(s)	115, 416, 476, 1063
AspS9I	GGNCC	1 cut(s)	980
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	585
AvaII	GGWCC	1 cut(s)	980
BaeGI	GKGCMC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	686
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	488, 622, 644, 893
BccI	CCATC	5 cut(s)	510, 992, 1013, 1017, 1061
BciT130I	CCWGG	2 cut(s)	374, 948
BcnI	CCSGG	1 cut(s)	26
BfaI	CTAG	2 cut(s)	63, 1043
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	116
BfuAI	ACCTGC	2 cut(s)	811, 1076
BglII	AGATCT	2 cut(s)	452, 931
BisI	GCNGC	5 cut(s)	477, 633, 636, 683, 882
BlsI	GCNGC	5 cut(s)	478, 634, 637, 684, 883
Bme1390I	CCNGG	3 cut(s)	26, 374, 948
Bme18I	GGWCC	1 cut(s)	980
BmgT120I	GGNCC	1 cut(s)	980
BmiI	GGNNCC	2 cut(s)	526, 982
BmrFI	CCNGG	3 cut(s)	26, 374, 948
BmrI	ACTGGG	2 cut(s)	397, 573
BmsI	GCATC	6 cut(s)	85, 163, 229, 867, 972, 1021
BmuI	ACTGGG	2 cut(s)	397, 573
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	2 cut(s)	203, 847
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	966
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	372, 853
Bsc4I	CCNNNNNNNGG	3 cut(s)	746, 953, 1005
Bse1I	ACTGG	3 cut(s)	365, 392, 568
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	374, 948
BseCI	ATCGAT	1 cut(s)	966
BseDI	CCNNGG	2 cut(s)	372, 853
BseGI	GGATG	1 cut(s)	1028
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	746, 953, 1005
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	424, 537
BseNI	ACTGG	3 cut(s)	365, 392, 568
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	488, 622, 644, 893
BsgI	GTGCAG	3 cut(s)	153, 411, 720
Bsh1236I	CGCG	2 cut(s)	474, 1063
Bsh1285I	CGRYCG	1 cut(s)	785
BshFI	GGCC	1 cut(s)	957
BshVI	ATCGAT	1 cut(s)	966
BsiEI	CGRYCG	1 cut(s)	785
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	354, 405
BslI	CCNNNNNNNGG	3 cut(s)	746, 953, 1005
BsmFI	GGGAC	2 cut(s)	354, 405
BsnI	GGCC	1 cut(s)	957
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	40
Bsp143I	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
BspACI	CCGC	4 cut(s)	472, 682, 746, 1063
BspANI	GGCC	1 cut(s)	957
BspCNI	CTCAG	2 cut(s)	423, 538
BspDI	ATCGAT	1 cut(s)	966
BspFNI	CGCG	2 cut(s)	474, 1063
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	526, 982
BspMAI	CTGCAG	1 cut(s)	405
BspMI	ACCTGC	2 cut(s)	811, 1076
BspPI	GGATC	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	627
BsrGI	TGTACA	1 cut(s)	40
BsrI	ACTGG	3 cut(s)	365, 392, 568
BssECI	CCNNGG	2 cut(s)	372, 853
BssMI	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
BssSI	CACGAG	1 cut(s)	686
BssT1I	CCWWGG	1 cut(s)	853
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	2 cut(s)	374, 948
Bst4CI	ACNGT	3 cut(s)	368, 529, 671
BstAUI	TGTACA	1 cut(s)	40
BstC8I	GCNNGC	3 cut(s)	193, 324, 955
BstDEI	CTNAG	3 cut(s)	410, 546, 557
BstF5I	GGATG	1 cut(s)	1028
BstFNI	CGCG	2 cut(s)	474, 1063
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	4 cut(s)	115, 416, 476, 1063
BstKTI	GATC	6 cut(s)	274, 455, 695, 785, 872, 934
BstMBI	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
BstMCI	CGRYCG	1 cut(s)	785
BstMWI	GCNNNNNNNGC	6 cut(s)	641, 688, 697, 743, 817, 864
BstNI	CCWGG	2 cut(s)	374, 948
BstNSI	RCATGY	2 cut(s)	848, 927
BstSCI	CCNGG	3 cut(s)	24, 372, 946
BstSFI	CTRYAG	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	227
BstUI	CGCG	2 cut(s)	474, 1063
BstV1I	GCAGC	4 cut(s)	488, 622, 644, 893
BstX2I	RGATCY	2 cut(s)	452, 931
BstXI	CCANNNNNNTGG	1 cut(s)	991
BstYI	RGATCY	2 cut(s)	452, 931
Bsu15I	ATCGAT	1 cut(s)	966
BsuRI	GGCC	1 cut(s)	957
BsuTUI	ATCGAT	1 cut(s)	966
BtsCI	GGATG	1 cut(s)	1028
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	2 cut(s)	811, 1076
Cac8I	GCNNGC	3 cut(s)	193, 324, 955
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	4 cut(s)	115, 416, 476, 1063
Cfr13I	GGNCC	1 cut(s)	980
ClaI	ATCGAT	1 cut(s)	966
CsiI	ACCWGGT	1 cut(s)	946
Csp6I	GTAC	3 cut(s)	41, 294, 848
CviAII	CATG	7 cut(s)	86, 236, 641, 697, 845, 924, 1005
CviQI	GTAC	3 cut(s)	41, 294, 848
DdeI	CTNAG	3 cut(s)	410, 546, 557
DpnI	GATC	6 cut(s)	273, 454, 694, 784, 871, 933
DpnII	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
DraIII	CACNNNGTG	1 cut(s)	950
Eco130I	CCWWGG	1 cut(s)	853
Eco32I	GATATC	2 cut(s)	728, 907
Eco47I	GGWCC	1 cut(s)	980
Eco57I	CTGAAG	2 cut(s)	107, 327
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	372, 946
EcoRV	GATATC	2 cut(s)	728, 907
EcoT14I	CCWWGG	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	853
FaeI	CATG	7 cut(s)	89, 239, 644, 700, 848, 927, 1008
FaqI	GGGAC	2 cut(s)	354, 405
FatI	CATG	7 cut(s)	85, 235, 640, 696, 844, 923, 1004
FauI	CCCGC	2 cut(s)	739, 1056
Fnu4HI	GCNGC	5 cut(s)	477, 633, 636, 683, 882
FokI	GGATG	1 cut(s)	1035
Fsp4HI	GCNGC	5 cut(s)	477, 633, 636, 683, 882
FspBI	CTAG	2 cut(s)	63, 1043
GlaI	GCGC	4 cut(s)	114, 415, 475, 1062
GluI	GCNGC	5 cut(s)	477, 633, 636, 683, 882
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	957
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	4 cut(s)	115, 416, 476, 1063
Hin1II	CATG	7 cut(s)	89, 239, 644, 700, 848, 927, 1008
Hin6I	GCGC	4 cut(s)	113, 414, 474, 1061
HinP1I	GCGC	4 cut(s)	113, 414, 474, 1061
HinfI	GANTC	3 cut(s)	152, 1001, 1010
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	585
Hpy166II	GTNNAC	2 cut(s)	667, 1048
Hpy188I	TCNGA	3 cut(s)	271, 787, 936
Hpy188III	TCNNGA	4 cut(s)	125, 149, 236, 902
Hpy8I	GTNNAC	2 cut(s)	667, 1048
HpyAV	CCTTC	2 cut(s)	174, 800
HpyCH4III	ACNGT	3 cut(s)	368, 529, 671
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	6 cut(s)	641, 688, 697, 743, 817, 864
HpyF3I	CTNAG	3 cut(s)	410, 546, 557
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	7 cut(s)	89, 239, 644, 700, 848, 927, 1008
HspAI	GCGC	4 cut(s)	113, 414, 474, 1061
Kzo9I	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
Lsp1109I	GCAGC	4 cut(s)	488, 622, 644, 893
LweI	GCATC	6 cut(s)	85, 163, 229, 867, 972, 1021
MabI	ACCWGGT	1 cut(s)	946
MaeI	CTAG	2 cut(s)	63, 1043
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	1093
MalI	GATC	6 cut(s)	273, 454, 694, 784, 871, 933
MboI	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
MboII	GAAGA	2 cut(s)	113, 320
MfeI	CAATTG	4 cut(s)	106, 417, 444, 756
MflI	RGATCY	2 cut(s)	452, 931
MhlI	GDGCHC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	6 cut(s)	178, 181, 202, 541, 774, 968
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	2 cut(s)	381, 717
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	2 cut(s)	635, 746
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	26, 374, 948
MunI	CAATTG	4 cut(s)	106, 417, 444, 756
MvaI	CCWGG	2 cut(s)	374, 948
MvnI	CGCG	2 cut(s)	474, 1063
MwoI	GCNNNNNNNGC	6 cut(s)	641, 688, 697, 743, 817, 864
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
NlaIII	CATG	7 cut(s)	89, 239, 644, 700, 848, 927, 1008
NlaIV	GGNNCC	2 cut(s)	526, 982
NspI	RCATGY	2 cut(s)	848, 927
PagI	TCATGA	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	3 cut(s)	152, 1001, 1010
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	5 cut(s)	478, 634, 637, 684, 883
Ple19I	CGATCG	1 cut(s)	785
Psp1406I	AACGTT	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	372, 946
PspGI	CCWGG	2 cut(s)	372, 946
PspN4I	GGNNCC	2 cut(s)	526, 982
PspPI	GGNCC	1 cut(s)	980
PstI	CTGCAG	1 cut(s)	405
PsuI	RGATCY	2 cut(s)	452, 931
PvuI	CGATCG	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	3 cut(s)	42, 295, 849
RsaNI	GTAC	3 cut(s)	41, 294, 848
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	381, 717
SatI	GCNGC	5 cut(s)	477, 633, 636, 683, 882
Sau3AI	GATC	6 cut(s)	271, 452, 692, 782, 869, 931
Sau96I	GGNCC	1 cut(s)	980
ScrFI	CCNGG	3 cut(s)	26, 374, 948
SduI	GDGCHC	1 cut(s)	227
SexAI	ACCWGGT	1 cut(s)	946
SfaNI	GCATC	6 cut(s)	85, 163, 229, 867, 972, 1021
SfcI	CTRYAG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	182, 862
SmoI	CTYRAG	2 cut(s)	182, 862
SsiI	CCGC	4 cut(s)	472, 682, 746, 1063
SspMI	CTAG	2 cut(s)	63, 1043
StyD4I	CCNGG	3 cut(s)	24, 372, 946
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	3 cut(s)	368, 529, 671
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	505, 966
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	685
TfiI	GAWTC	3 cut(s)	152, 1001, 1010
Tru1I	TTAA	2 cut(s)	381, 717
Tru9I	TTAA	2 cut(s)	381, 717
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	4 cut(s)	476, 632, 635, 881
TspDTI	ATGAA	4 cut(s)	224, 354, 819, 993
TspGWI	ACGGA	2 cut(s)	993, 1028
TspRI	CASTG	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	980
XapI	RAATTY	2 cut(s)	29, 47
XceI	RCATGY	2 cut(s)	848, 927
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	2 cut(s)	63, 1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.