Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011475

Physical Location & Seq

Genomic Coordinates Forward (+)

59921660 .. 59926416

Gene Structure 4757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0477500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGGACACTCCAAGAGGAGTGATGATGATGATGTCACTACTGACTCCTCTGCCACAGAGTCTGACACTTCTGCCACCAAGACCGATTCCGGCATCGAACATGAAAACGACGACGACGTCTCATCTCCTTCCTCTGATTCATGCCCCTTTGTCGAAGGAGAGAAGGTCCTCGCTTATCACAACACTCACATTTACGACGCCAAGGTGATCAAAACTCAATTTAAGAACGAATGGAGGTTTTTTATTCATTACCTTGGCTGGAATAAAAATTGGGATGAGTGGGTACGCCTGGACCGTTTATTGAAATATACTGAAGAGAATGTGGAGAAACAGGAGCTCGCCAGAATGAAAGACGGAACAGACAAGAATCCAAAGCTATCACGCACATCCCAGACTAAACTAAAAAGTTATAATGGGGCAAGAGGCAAGAAGAGAAAGAATGACTCTGTCGTTAAGGGTGCGATACGCTTGGAAGAACTTGTGATTCGAATGCCACATGCTTTAAGGAAACAACTAGTTGATGATTGCGAATCAGTTACTCATCTGGGCAAGCTTGTTAAACTTCCCCGGACTCCAAATGTTGATGACATACTGAAGAAGTATCTAGAATACAGATCAAACAGCGATGATTTGAAAGCTCATTCAGTTGAAGAAATTCTGAAAGGACTATGTTGCTACTTTGACAAAGCATTGCCAGTTATGCTTCTTTACAAAAATGAGCGTCCGCAGTATGAGAAAGCAATTGCAGATAATGTCTCTCCTTCGTCTGTATACGGTGCTGAGCACCTATTACGCCTCTTTGTTAAACTGCCCGAGTTATTGGTTGAGGCTAACATTGAAGAGGAGACTTTGAAAGAACTGCTGCAAAGATTGGCCGACTTTCTCAAGTTCCTACATAAGAACCAGAGTGCATTCTTCCTCTCTTCCTACCATGTACCAGAAGATACTGAAATCAGCACCAACAAACAAGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0005829 GO:0006810 GO:0006887 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016043 GO:0016049 GO:0016192 GO:0021700 GO:0022622 GO:0030154 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032940 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060560 GO:0071695 GO:0071840 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TOM20_plant

Protein Analysis

325

Amino Acids

37.47

Weight (kDa)

5.83

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSL3_chromo-like	PF22732	50 - 112	2.9e-13	MSL3 chromodomain-like
Tudor-knot	PF11717	50 - 101	1.5e-11	RNA binding activity-knot of a chromodomain
MRG	PF05712	155 - 310	2e-47	MRG

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41950
fragaria_vesca	FvH4_5g10960 FvH4_5g10960
malus_domestica	MD06G1118100.v1.1 MD14G1126200.v1.1
prunus_persica	Prupe.5G129200_v2.0.a1 Prupe.5G129200_v2.0.a1
pyrus_communis	pycom06g10980 pycom14g11090
rosa_chinensis	RchiOBHm_Chr7g0186861
rosa_laevigata	RLG00000004809
rosa_multiflora	Rmu_ssc0000024.1_g000032
rosa_roxburghii	Rroxscaffold_3G00267760
rosa_rugosa	Rorug06G0477500 Rorug06G0477500
rosa_samantha	Rh7AG083300 Rh7BG079500 Rh7CG084300 Rh7DG085200
rosa_wichuraiana	Rw7G007330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AasI	GACNNNNNNGTC	1 cut(s)	116
AatII	GACGTC	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	771
AciI	CCGC	1 cut(s)	725
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	2 cut(s)	333, 614
AcyI	GRCGYC	2 cut(s)	117, 198
AfaI	GTAC	2 cut(s)	285, 936
AgsI	TTSAA	5 cut(s)	304, 634, 650, 839, 853
AhlI	ACTAGT	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	4 cut(s)	337, 376, 553, 638
AluI	AGCT	4 cut(s)	337, 376, 553, 638
Alw21I	GWGCWC	2 cut(s)	339, 786
Alw26I	GTCTC	3 cut(s)	124, 760, 839
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	812
AoxI	GGCC	1 cut(s)	873
ApeKI	GCWGC	1 cut(s)	862
ApoI	RAATTY	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	654
AspS9I	GGNCC	2 cut(s)	166, 292
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	812
AvaII	GGWCC	2 cut(s)	166, 292
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	2 cut(s)	339, 786
BbvI	GCAGC	1 cut(s)	849
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	3 cut(s)	124, 760, 839
BcuI	ACTAGT	1 cut(s)	514
BfaI	CTAG	2 cut(s)	515, 605
BisI	GCNGC	1 cut(s)	863
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	864
Bme1390I	CCNGG	2 cut(s)	290, 568
Bme18I	GGWCC	2 cut(s)	166, 292
BmeT110I	CYCGRG	1 cut(s)	812
BmgT120I	GGNCC	2 cut(s)	166, 292
BmrFI	CCNGG	2 cut(s)	290, 568
BmsI	GCATC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	487
BpuEI	CTTGAG	1 cut(s)	869
BpuMI	CCSGG	1 cut(s)	568
BsaHI	GRCGYC	2 cut(s)	117, 198
BsaJI	CCNNGG	3 cut(s)	201, 253, 566
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	1 cut(s)	689
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	3 cut(s)	201, 253, 566
BseGI	GGATG	2 cut(s)	280, 386
BseMI	GCAATG	1 cut(s)	689
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	3 cut(s)	31, 37, 857
BseXI	GCAGC	1 cut(s)	849
BshFI	GGCC	1 cut(s)	875
BsiHKAI	GWGCWC	2 cut(s)	339, 786
BsiHKCI	CYCGRG	1 cut(s)	812
BsiSI	CCGG	2 cut(s)	90, 568
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	3 cut(s)	124, 760, 839
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	2 cut(s)	495, 911
BsnI	GGCC	1 cut(s)	875
BsoBI	CYCGRG	1 cut(s)	812
Bsp119I	TTCGAA	1 cut(s)	487
Bsp1286I	GDGCHC	2 cut(s)	339, 786
Bsp143I	GATC	2 cut(s)	207, 614
Bsp1720I	GCTNAGC	1 cut(s)	780
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	1 cut(s)	772
BspT104I	TTCGAA	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	3 cut(s)	201, 253, 566
BssMI	GATC	2 cut(s)	207, 614
BssNAI	GTATAC	1 cut(s)	772
BssNI	GRCGYC	2 cut(s)	117, 198
BssT1I	CCWWGG	2 cut(s)	201, 253
Bst1107I	GTATAC	1 cut(s)	772
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	296, 776
Bst6I	CTCTTC	4 cut(s)	309, 425, 834, 928
BstACI	GRCGYC	2 cut(s)	117, 198
BstBI	TTCGAA	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	339, 551
BstDEI	CTNAG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	280, 386
BstKTI	GATC	2 cut(s)	210, 617
BstMAI	GTCTC	3 cut(s)	124, 760, 839
BstMBI	GATC	2 cut(s)	207, 614
BstMWI	GCNNNNNNNGC	1 cut(s)	700
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	288, 566
BstV1I	GCAGC	1 cut(s)	849
BstZ17I	GTATAC	1 cut(s)	772
BsuRI	GGCC	1 cut(s)	875
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	2 cut(s)	280, 386
Cac8I	GCNNGC	2 cut(s)	339, 551
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	166, 292
CseI	GACGC	2 cut(s)	206, 710
Csp6I	GTAC	2 cut(s)	284, 935
CviAII	CATG	4 cut(s)	101, 141, 497, 932
CviJI	RGCY	7 cut(s)	258, 337, 376, 553, 638, 830, 875
CviKI_1	RGCY	7 cut(s)	258, 337, 376, 553, 638, 830, 875
CviQI	GTAC	2 cut(s)	284, 935
DdeI	CTNAG	1 cut(s)	780
DpnI	GATC	2 cut(s)	209, 616
DpnII	GATC	2 cut(s)	207, 614
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	873
Eam1104I	CTCTTC	4 cut(s)	309, 425, 834, 928
EarI	CTCTTC	4 cut(s)	309, 425, 834, 928
Ecl136II	GAGCTC	1 cut(s)	337
Eco130I	CCWWGG	2 cut(s)	201, 253
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	2 cut(s)	166, 292
Eco53kI	GAGCTC	1 cut(s)	337
Eco57I	CTGAAG	2 cut(s)	333, 614
Eco88I	CYCGRG	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	201, 253
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	2 cut(s)	201, 253
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	4 cut(s)	104, 144, 500, 935
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	100, 140, 496, 931
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	1 cut(s)	863
FokI	GGATG	2 cut(s)	287, 373
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	863
FspBI	CTAG	2 cut(s)	515, 605
GluI	GCNGC	1 cut(s)	863
HaeIII	GGCC	1 cut(s)	875
HapII	CCGG	2 cut(s)	90, 568
HgaI	GACGC	2 cut(s)	206, 710
Hin1I	GRCGYC	2 cut(s)	117, 198
Hin1II	CATG	4 cut(s)	104, 144, 500, 935
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	9 cut(s)	44, 59, 86, 137, 367, 443, 484, 530, 571
HpaII	CCGG	2 cut(s)	90, 568
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	3 cut(s)	64, 136, 660
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	772
Hpy99I	CGWCG	4 cut(s)	113, 116, 119, 200
HpyAV	CCTTC	4 cut(s)	138, 149, 157, 771
HpyCH4III	ACNGT	2 cut(s)	296, 776
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	746, 865, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	700
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	2 cut(s)	117, 198
Hsp92II	CATG	4 cut(s)	104, 144, 500, 935
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	207, 614
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	1 cut(s)	849
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	2 cut(s)	515, 605
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	34, 535
MalI	GATC	2 cut(s)	209, 616
MboI	GATC	2 cut(s)	207, 614
MboII	GAAGA	9 cut(s)	326, 442, 485, 607, 662, 851, 907, 915, 953
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	2 cut(s)	339, 786
MluCI	AATT	4 cut(s)	218, 268, 654, 741
MlyI	GAGTC	4 cut(s)	38, 68, 437, 565
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	5 cut(s)	222, 453, 503, 558, 804
MspI	CCGG	2 cut(s)	90, 568
MspR9I	CCNGG	2 cut(s)	290, 568
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	495, 911
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	700
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	207, 614
NlaIII	CATG	4 cut(s)	104, 144, 500, 935
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	500
NspV	TTCGAA	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 292
PctI	GAATGC	2 cut(s)	495, 911
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	5 cut(s)	86, 137, 367, 484, 530
PflFI	GACNNNGTC	2 cut(s)	116, 446
PkrI	GCNGC	1 cut(s)	864
PleI	GAGTC	4 cut(s)	38, 67, 437, 565
PpsI	GAGTC	4 cut(s)	38, 67, 437, 565
PpuMI	RGGWCCY	1 cut(s)	166
PsiI	TTATAA	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	166, 292
PspPPI	RGGWCCY	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	62
PsyI	GACNNNGTC	2 cut(s)	116, 446
RsaI	GTAC	2 cut(s)	285, 936
RsaNI	GTAC	2 cut(s)	284, 935
SacI	GAGCTC	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	222, 453, 503, 558, 804
SatI	GCNGC	1 cut(s)	863
Sau3AI	GATC	2 cut(s)	207, 614
Sau96I	GGNCC	2 cut(s)	166, 292
SchI	GAGTC	4 cut(s)	38, 68, 437, 565
ScrFI	CCNGG	2 cut(s)	290, 568
SduI	GDGCHC	2 cut(s)	339, 786
SfaNI	GCATC	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	487
SinI	GGWCC	2 cut(s)	166, 292
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
SpeI	ACTAGT	1 cut(s)	514
Sse9I	AATT	4 cut(s)	218, 268, 654, 741
SsiI	CCGC	1 cut(s)	725
SspMI	CTAG	2 cut(s)	515, 605
SstI	GAGCTC	1 cut(s)	339
StyD4I	CCNGG	2 cut(s)	288, 566
StyI	CCWWGG	2 cut(s)	201, 253
TaaI	ACNGT	2 cut(s)	296, 776
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	96, 153, 487
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	4 cut(s)	218, 268, 654, 741
TfiI	GAWTC	5 cut(s)	86, 137, 367, 484, 530
Tru1I	TTAA	5 cut(s)	222, 453, 503, 558, 804
Tru9I	TTAA	5 cut(s)	222, 453, 503, 558, 804
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	862
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	117, 129, 236, 362
TspGWI	ACGGA	1 cut(s)	369
Tth111I	GACNNNGTC	2 cut(s)	116, 446
VpaK11BI	GGWCC	2 cut(s)	166, 292
XapI	RAATTY	1 cut(s)	654
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	771
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	2 cut(s)	515, 605
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.