No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G41950 |
| fragaria_vesca | FvH4_5g10960 FvH4_5g10960 |
| malus_domestica | MD06G1118100.v1.1 MD14G1126200.v1.1 |
| prunus_persica | Prupe.5G129200_v2.0.a1 Prupe.5G129200_v2.0.a1 |
| pyrus_communis | pycom06g10980 pycom14g11090 |
| rosa_chinensis | RchiOBHm_Chr7g0186861 |
| rosa_laevigata | RLG00000004809 |
| rosa_multiflora | Rmu_ssc0000024.1_g000032 |
| rosa_roxburghii | Rroxscaffold_3G00267760 |
| rosa_rugosa | Rorug06G0477500 Rorug06G0477500 |
| rosa_samantha | Rh7AG083300 Rh7BG079500 Rh7CG084300 Rh7DG085200 |
| rosa_wichuraiana | Rw7G007330 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 455 |
| AccII | CGCG | 1 cut(s) | 253 |
| AccIII | TCCGGA | 1 cut(s) | 64 |
| AciI | CCGC | 4 cut(s) | 12, 167, 253, 998 |
| AclI | AACGTT | 1 cut(s) | 594 |
| AclWI | GGATC | 3 cut(s) | 182, 220, 1030 |
| AcuI | CTGAAG | 2 cut(s) | 284, 780 |
| AcyI | GRCGYC | 1 cut(s) | 221 |
| AfaI | GTAC | 2 cut(s) | 289, 748 |
| AgsI | TTSAA | 2 cut(s) | 322, 1140 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 825 |
| AluBI | AGCT | 9 cut(s) | 182, 262, 360, 758, 800, 932, 1073, 1088, 1152 |
| AluI | AGCT | 9 cut(s) | 182, 262, 360, 758, 800, 932, 1073, 1088, 1152 |
| Alw21I | GWGCWC | 1 cut(s) | 417 |
| Alw26I | GTCTC | 1 cut(s) | 335 |
| AlwI | GGATC | 3 cut(s) | 182, 220, 1030 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 131 |
| Aor13HI | TCCGGA | 1 cut(s) | 64 |
| AoxI | GGCC | 2 cut(s) | 254, 777 |
| ApeKI | GCWGC | 6 cut(s) | 182, 425, 500, 929, 1085, 1088 |
| AspLEI | GCGC | 3 cut(s) | 124, 568, 869 |
| AspS9I | GGNCC | 1 cut(s) | 487 |
| AsuC2I | CCSGG | 1 cut(s) | 926 |
| AsuHPI | GGTGA | 2 cut(s) | 184, 1038 |
| AvaII | GGWCC | 1 cut(s) | 487 |
| BaeGI | GKGCMC | 2 cut(s) | 102, 680 |
| BanI | GGYRCC | 1 cut(s) | 455 |
| BauI | CACGAG | 2 cut(s) | 95, 882 |
| BbsI | GAAGAC | 1 cut(s) | 24 |
| Bbv12I | GWGCWC | 1 cut(s) | 417 |
| BbvI | GCAGC | 6 cut(s) | 169, 412, 487, 941, 1075, 1097 |
| BccI | CCATC | 3 cut(s) | 461, 678, 963 |
| BceAI | ACGGC | 1 cut(s) | 270 |
| BciT130I | CCWGG | 1 cut(s) | 827 |
| BciVI | GTATCC | 1 cut(s) | 997 |
| BclI | TGATCA | 1 cut(s) | 438 |
| BcnI | CCSGG | 1 cut(s) | 926 |
| BcoDI | GTCTC | 1 cut(s) | 335 |
| BfaI | CTAG | 2 cut(s) | 357, 516 |
| BfmI | CTRYAG | 3 cut(s) | 183, 575, 854 |
| BfoI | RGCGCY | 2 cut(s) | 125, 569 |
| BfuI | GTATCC | 1 cut(s) | 997 |
| BisI | GCNGC | 7 cut(s) | 183, 254, 426, 501, 930, 1086, 1089 |
| BlsI | GCNGC | 7 cut(s) | 184, 255, 427, 502, 931, 1087, 1090 |
| Bme1390I | CCNGG | 2 cut(s) | 827, 926 |
| Bme18I | GGWCC | 1 cut(s) | 487 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 487 |
| BmiI | GGNNCC | 3 cut(s) | 284, 457, 488 |
| BmrFI | CCNGG | 2 cut(s) | 827, 926 |
| BmrI | ACTGGG | 2 cut(s) | 850, 1026 |
| BmsI | GCATC | 6 cut(s) | 94, 193, 538, 616, 682, 1131 |
| BmuI | ACTGGG | 2 cut(s) | 850, 1026 |
| BpiI | GAAGAC | 1 cut(s) | 24 |
| Bpu10I | CCTNAGC | 1 cut(s) | 258 |
| BpuEI | CTTGAG | 1 cut(s) | 656 |
| BpuMI | CCSGG | 1 cut(s) | 926 |
| Bsa29I | ATCGAT | 1 cut(s) | 896 |
| BsaBI | GATNNNNATC | 1 cut(s) | 954 |
| BsaHI | GRCGYC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 3 cut(s) | 331, 825, 973 |
| BsaWI | WCCGGW | 2 cut(s) | 64, 142 |
| Bse1I | ACTGG | 4 cut(s) | 234, 818, 845, 1021 |
| Bse3DI | GCAATG | 2 cut(s) | 435, 1080 |
| Bse8I | GATNNNNATC | 1 cut(s) | 954 |
| BseAI | TCCGGA | 1 cut(s) | 64 |
| BseBI | CCWGG | 1 cut(s) | 827 |
| BseCI | ATCGAT | 1 cut(s) | 896 |
| BseDI | CCNNGG | 3 cut(s) | 331, 825, 973 |
| BseGI | GGATG | 2 cut(s) | 208, 1127 |
| BseJI | GATNNNNATC | 1 cut(s) | 954 |
| BseMI | GCAATG | 2 cut(s) | 435, 1080 |
| BseMII | CTCAG | 2 cut(s) | 249, 877 |
| BseNI | ACTGG | 4 cut(s) | 234, 818, 845, 1021 |
| BseRI | GAGGAG | 1 cut(s) | 653 |
| BseSI | GKGCMC | 2 cut(s) | 102, 680 |
| BseXI | GCAGC | 6 cut(s) | 169, 412, 487, 941, 1075, 1097 |
| BsgI | GTGCAG | 2 cut(s) | 606, 864 |
| Bsh1236I | CGCG | 1 cut(s) | 253 |
| Bsh1285I | CGRYCG | 1 cut(s) | 900 |
| BshFI | GGCC | 2 cut(s) | 256, 779 |
| BshNI | GGYRCC | 1 cut(s) | 455 |
| BshVI | ATCGAT | 1 cut(s) | 896 |
| BsiEI | CGRYCG | 1 cut(s) | 900 |
| BsiHKAI | GWGCWC | 1 cut(s) | 417 |
| BsiSI | CCGG | 3 cut(s) | 65, 143, 925 |
| BsiWI | CGTACG | 1 cut(s) | 287 |
| BslFI | GGGAC | 4 cut(s) | 13, 259, 807, 858 |
| BsmAI | GTCTC | 1 cut(s) | 335 |
| BsmFI | GGGAC | 4 cut(s) | 13, 259, 807, 858 |
| BsnI | GGCC | 2 cut(s) | 256, 779 |
| Bsp1286I | GDGCHC | 3 cut(s) | 102, 417, 680 |
| Bsp13I | TCCGGA | 1 cut(s) | 64 |
| Bsp143I | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| BspACI | CCGC | 4 cut(s) | 12, 167, 253, 998 |
| BspANI | GGCC | 2 cut(s) | 256, 779 |
| BspCNI | CTCAG | 2 cut(s) | 250, 876 |
| BspDI | ATCGAT | 1 cut(s) | 896 |
| BspEI | TCCGGA | 1 cut(s) | 64 |
| BspFNI | CGCG | 1 cut(s) | 253 |
| BspHI | TCATGA | 1 cut(s) | 688 |
| BspLI | GGNNCC | 3 cut(s) | 284, 457, 488 |
| BspMAI | CTGCAG | 3 cut(s) | 187, 579, 858 |
| BspPI | GGATC | 3 cut(s) | 182, 220, 1030 |
| BspT107I | GGYRCC | 1 cut(s) | 455 |
| BsrDI | GCAATG | 2 cut(s) | 435, 1080 |
| BsrI | ACTGG | 4 cut(s) | 234, 818, 845, 1021 |
| BssECI | CCNNGG | 3 cut(s) | 331, 825, 973 |
| BssMI | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| BssNI | GRCGYC | 1 cut(s) | 221 |
| BssSI | CACGAG | 2 cut(s) | 95, 882 |
| BssT1I | CCWWGG | 2 cut(s) | 331, 973 |
| Bst2BI | CACGAG | 2 cut(s) | 95, 882 |
| Bst2UI | CCWGG | 1 cut(s) | 827 |
| Bst4CI | ACNGT | 7 cut(s) | 91, 196, 371, 383, 821, 982, 1064 |
| BstACI | GRCGYC | 1 cut(s) | 221 |
| BstC8I | GCNNGC | 4 cut(s) | 362, 646, 777, 879 |
| BstDEI | CTNAG | 3 cut(s) | 258, 863, 1010 |
| BstF5I | GGATG | 2 cut(s) | 208, 1127 |
| BstFNI | CGCG | 1 cut(s) | 253 |
| BstH2I | RGCGCY | 2 cut(s) | 125, 569 |
| BstHHI | GCGC | 3 cut(s) | 124, 568, 869 |
| BstKTI | GATC | 8 cut(s) | 177, 190, 228, 441, 476, 727, 900, 1025 |
| BstMAI | GTCTC | 1 cut(s) | 335 |
| BstMBI | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| BstMCI | CGRYCG | 1 cut(s) | 900 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 113, 259, 574, 1094 |
| BstNI | CCWGG | 1 cut(s) | 827 |
| BstSCI | CCNGG | 2 cut(s) | 825, 924 |
| BstSFI | CTRYAG | 3 cut(s) | 183, 575, 854 |
| BstSLI | GKGCMC | 2 cut(s) | 102, 680 |
| BstUI | CGCG | 1 cut(s) | 253 |
| BstV1I | GCAGC | 6 cut(s) | 169, 412, 487, 941, 1075, 1097 |
| BstV2I | GAAGAC | 1 cut(s) | 24 |
| BstX2I | RGATCY | 2 cut(s) | 187, 1022 |
| BstYI | RGATCY | 2 cut(s) | 187, 1022 |
| Bsu15I | ATCGAT | 1 cut(s) | 896 |
| BsuI | GTATCC | 1 cut(s) | 997 |
| BsuRI | GGCC | 2 cut(s) | 256, 779 |
| BsuTUI | ATCGAT | 1 cut(s) | 896 |
| BtsCI | GGATG | 2 cut(s) | 208, 1127 |
| BtsIMutI | CAGTG | 1 cut(s) | 388 |
| Cac8I | GCNNGC | 4 cut(s) | 362, 646, 777, 879 |
| CaiI | CAGNNNCTG | 1 cut(s) | 131 |
| CciI | TCATGA | 1 cut(s) | 688 |
| CfoI | GCGC | 3 cut(s) | 124, 568, 869 |
| Cfr13I | GGNCC | 1 cut(s) | 487 |
| ClaI | ATCGAT | 1 cut(s) | 896 |
| CseI | GACGC | 1 cut(s) | 229 |
| Csp6I | GTAC | 2 cut(s) | 288, 747 |
| CviAII | CATG | 2 cut(s) | 689, 1094 |
| CviQI | GTAC | 2 cut(s) | 288, 747 |
| DdeI | CTNAG | 3 cut(s) | 258, 863, 1010 |
| DpnI | GATC | 8 cut(s) | 176, 189, 227, 440, 475, 726, 899, 1024 |
| DpnII | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| DriI | GACNNNNNGTC | 1 cut(s) | 25 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 25 |
| EciI | GGCGGA | 1 cut(s) | 1013 |
| Eco130I | CCWWGG | 2 cut(s) | 331, 973 |
| Eco47I | GGWCC | 1 cut(s) | 487 |
| Eco57I | CTGAAG | 2 cut(s) | 284, 780 |
| EcoO109I | RGGNCCY | 1 cut(s) | 487 |
| EcoRII | CCWGG | 1 cut(s) | 825 |
| EcoT14I | CCWWGG | 2 cut(s) | 331, 973 |
| ErhI | CCWWGG | 2 cut(s) | 331, 973 |
| FaeI | CATG | 2 cut(s) | 692, 1097 |
| FaqI | GGGAC | 4 cut(s) | 13, 259, 807, 858 |
| FatI | CATG | 2 cut(s) | 688, 1093 |
| FauI | CCCGC | 1 cut(s) | 19 |
| FbaI | TGATCA | 1 cut(s) | 438 |
| Fnu4HI | GCNGC | 7 cut(s) | 183, 254, 426, 501, 930, 1086, 1089 |
| FokI | GGATG | 2 cut(s) | 215, 1114 |
| Fsp4HI | GCNGC | 7 cut(s) | 183, 254, 426, 501, 930, 1086, 1089 |
| FspBI | CTAG | 2 cut(s) | 357, 516 |
| GlaI | GCGC | 3 cut(s) | 123, 567, 868 |
| GluI | GCNGC | 7 cut(s) | 183, 254, 426, 501, 930, 1086, 1089 |
| HaeII | RGCGCY | 2 cut(s) | 125, 569 |
| HaeIII | GGCC | 2 cut(s) | 256, 779 |
| HapII | CCGG | 3 cut(s) | 65, 143, 925 |
| HgaI | GACGC | 1 cut(s) | 229 |
| HhaI | GCGC | 3 cut(s) | 124, 568, 869 |
| Hin1I | GRCGYC | 1 cut(s) | 221 |
| Hin1II | CATG | 2 cut(s) | 692, 1097 |
| Hin6I | GCGC | 3 cut(s) | 122, 566, 867 |
| HinP1I | GCGC | 3 cut(s) | 122, 566, 867 |
| HinfI | GANTC | 5 cut(s) | 39, 80, 134, 353, 605 |
| HpaII | CCGG | 3 cut(s) | 65, 143, 925 |
| HphI | GGTGA | 2 cut(s) | 184, 1038 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 294 |
| Hpy188I | TCNGA | 4 cut(s) | 192, 241, 724, 1101 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 536, 602, 689, 1026 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 294 |
| Hpy99I | CGWCG | 3 cut(s) | 196, 223, 278 |
| HpyAV | CCTTC | 3 cut(s) | 236, 272, 627 |
| HpyCH4III | ACNGT | 7 cut(s) | 91, 196, 371, 383, 821, 982, 1064 |
| HpyCH4IV | ACGT | 2 cut(s) | 290, 594 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 113, 259, 574, 1094 |
| HpyF3I | CTNAG | 3 cut(s) | 258, 863, 1010 |
| HpySE526I | ACGT | 2 cut(s) | 290, 594 |
| Hsp92I | GRCGYC | 1 cut(s) | 221 |
| Hsp92II | CATG | 2 cut(s) | 692, 1097 |
| HspAI | GCGC | 3 cut(s) | 122, 566, 867 |
| Kpn2I | TCCGGA | 1 cut(s) | 64 |
| Ksp22I | TGATCA | 1 cut(s) | 438 |
| Kzo9I | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| LmnI | GCTCC | 1 cut(s) | 282 |
| Lsp1109I | GCAGC | 6 cut(s) | 169, 412, 487, 941, 1075, 1097 |
| LweI | GCATC | 6 cut(s) | 94, 193, 538, 616, 682, 1131 |
| MaeI | CTAG | 2 cut(s) | 357, 516 |
| MaeII | ACGT | 2 cut(s) | 290, 594 |
| MaeIII | GTNAC | 2 cut(s) | 371, 448 |
| MalI | GATC | 8 cut(s) | 176, 189, 227, 440, 475, 726, 899, 1024 |
| MboI | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| MboII | GAAGA | 5 cut(s) | 29, 277, 398, 773, 1128 |
| MfeI | CAATTG | 2 cut(s) | 559, 870 |
| MflI | RGATCY | 2 cut(s) | 187, 1022 |
| MhlI | GDGCHC | 3 cut(s) | 102, 417, 680 |
| MluCI | AATT | 7 cut(s) | 559, 703, 787, 870, 944, 963, 1108 |
| MlyI | GAGTC | 1 cut(s) | 33 |
| MmeI | TCCRAC | 2 cut(s) | 67, 215 |
| MnlI | CCTC | 9 cut(s) | 33, 104, 193, 294, 501, 631, 634, 655, 994 |
| MroI | TCCGGA | 1 cut(s) | 64 |
| MseI | TTAA | 2 cut(s) | 312, 834 |
| MslI | CAYNNNNRTG | 1 cut(s) | 420 |
| MspA1I | CMGCKG | 1 cut(s) | 1088 |
| MspI | CCGG | 3 cut(s) | 65, 143, 925 |
| MspR9I | CCNGG | 2 cut(s) | 827, 926 |
| MunI | CAATTG | 2 cut(s) | 559, 870 |
| MvaI | CCWGG | 1 cut(s) | 827 |
| MvnI | CGCG | 1 cut(s) | 253 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 113, 259, 574, 1094 |
| NciI | CCSGG | 1 cut(s) | 926 |
| NdeII | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| NlaIII | CATG | 2 cut(s) | 692, 1097 |
| NlaIV | GGNNCC | 3 cut(s) | 284, 457, 488 |
| NmuCI | GTSAC | 1 cut(s) | 448 |
| PagI | TCATGA | 1 cut(s) | 688 |
| PfeI | GAWTC | 4 cut(s) | 80, 134, 353, 605 |
| Pfl23II | CGTACG | 1 cut(s) | 287 |
| PkrI | GCNGC | 7 cut(s) | 184, 255, 427, 502, 931, 1087, 1090 |
| Ple19I | CGATCG | 1 cut(s) | 900 |
| PleI | GAGTC | 1 cut(s) | 33 |
| PpsI | GAGTC | 1 cut(s) | 33 |
| PpuMI | RGGWCCY | 1 cut(s) | 487 |
| Psp1406I | AACGTT | 1 cut(s) | 594 |
| Psp5II | RGGWCCY | 1 cut(s) | 487 |
| Psp6I | CCWGG | 1 cut(s) | 825 |
| PspGI | CCWGG | 1 cut(s) | 825 |
| PspLI | CGTACG | 1 cut(s) | 287 |
| PspN4I | GGNNCC | 3 cut(s) | 284, 457, 488 |
| PspPI | GGNCC | 1 cut(s) | 487 |
| PspPPI | RGGWCCY | 1 cut(s) | 487 |
| PstI | CTGCAG | 3 cut(s) | 187, 579, 858 |
| PstNI | CAGNNNCTG | 1 cut(s) | 131 |
| PsuI | RGATCY | 2 cut(s) | 187, 1022 |
| PvuI | CGATCG | 1 cut(s) | 900 |
| PvuII | CAGCTG | 1 cut(s) | 1088 |
| RsaI | GTAC | 2 cut(s) | 289, 748 |
| RsaNI | GTAC | 2 cut(s) | 288, 747 |
| RseI | CAYNNNNRTG | 1 cut(s) | 420 |
| SaqAI | TTAA | 2 cut(s) | 312, 834 |
| SatI | GCNGC | 7 cut(s) | 183, 254, 426, 501, 930, 1086, 1089 |
| Sau3AI | GATC | 8 cut(s) | 174, 187, 225, 438, 473, 724, 897, 1022 |
| Sau96I | GGNCC | 1 cut(s) | 487 |
| SchI | GAGTC | 1 cut(s) | 33 |
| ScrFI | CCNGG | 2 cut(s) | 827, 926 |
| SduI | GDGCHC | 3 cut(s) | 102, 417, 680 |
| SfaNI | GCATC | 6 cut(s) | 94, 193, 538, 616, 682, 1131 |
| SfcI | CTRYAG | 3 cut(s) | 183, 575, 854 |
| SinI | GGWCC | 1 cut(s) | 487 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 420 |
| SmlI | CTYRAG | 1 cut(s) | 635 |
| SmoI | CTYRAG | 1 cut(s) | 635 |
| Sse9I | AATT | 7 cut(s) | 559, 703, 787, 870, 944, 963, 1108 |
| SsiI | CCGC | 4 cut(s) | 12, 167, 253, 998 |
| SspMI | CTAG | 2 cut(s) | 357, 516 |
| StyD4I | CCNGG | 2 cut(s) | 825, 924 |
| StyI | CCWWGG | 2 cut(s) | 331, 973 |
| TaaI | ACNGT | 7 cut(s) | 91, 196, 371, 383, 821, 982, 1064 |
| TaiI | ACGT | 2 cut(s) | 293, 597 |
| TaqI | TCGA | 5 cut(s) | 177, 472, 727, 896, 958 |
| TasI | AATT | 7 cut(s) | 559, 703, 787, 870, 944, 963, 1108 |
| TauI | GCSGC | 1 cut(s) | 256 |
| TfiI | GAWTC | 4 cut(s) | 80, 134, 353, 605 |
| Tru1I | TTAA | 2 cut(s) | 312, 834 |
| Tru9I | TTAA | 2 cut(s) | 312, 834 |
| TscAI | CASTG | 1 cut(s) | 388 |
| TseFI | GTSAC | 1 cut(s) | 448 |
| TseI | GCWGC | 6 cut(s) | 182, 425, 500, 929, 1085, 1088 |
| Tsp45I | GTSAC | 1 cut(s) | 448 |
| TspDTI | ATGAA | 3 cut(s) | 366, 677, 807 |
| TspGWI | ACGGA | 2 cut(s) | 15, 51 |
| TspRI | CASTG | 1 cut(s) | 388 |
| VpaK11BI | GGWCC | 1 cut(s) | 487 |
| XspI | CTAG | 2 cut(s) | 357, 516 |