Rh7DG085200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
6807389 .. 6813828
6440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG085200.1

Sequence Viewer

Length: 1155 bp
ATGTCCACACCCGCCGAAGACCCTCCGTCCCAAAACGGACTCCAACCCGACCCGACTACAAATCCGGAAGCCCAACCCGAATCGCAAACAGTCCTCGTGCCCGATGCCGAACCAGCACCAGCGCCAGAGCCTGAATCTAAACCGGAACTACAACCCCGACCCGAAGCGGTGGTGATCGAAGCTGCAGATCCGACGGTGGAGGATGCCAAAGAAACCACGACGCCGATCCAATCCAGTTCCGAAGGGACTTCGCGGCCTGAGCTGAAGAAAGACGACGAAGGGAGCCGTACGTTCACAATGAGGGAGTTGCTTAATGGCTTGAAAAATGACCAAGGAAATGAGACTGCTAATGAATCTAGCTCGCCTTACAGTTACAGCCACAGTGAAGAAACCCCACATCATCAACAACAAGAGCACAACAATGCTGCAATGGAGTTGATCAATAGTGTCACAGGCACCGATGATGATGGTCGATCTCGCCAACGGGTCCTTACTTTTGCTGCCAAGAGGTATGCTAGTGCAATAGAGAGAAATCCAGATGATTATGATGCACTATACAATTGGGCGCTGGTTCTGCAGGAAAGTGCAGATAACGTTAGTCCTGATTCTACATCTCCTTCTAAAGATGCTTTGCTTGAGGAGGCTTGCAAAAAATATGACGAGGCTACCCATCTGTGCCCAACACTTCATGATGCTTTCTATAATTGGGCTATTGCAATCTCTGATCGAGCAAAAATGCGTGGTCGTACAAAGGAAGCTGAAGAACTATGGAAGCAGGCCACAAAAAATTATGAAAAAGCTGTCCTGCTGAACTGGAACAGTCCCCAGGCACTTAACAACTGGGGACTTGCTCTGCAGGAACTCAGCGCAATTGTGCCTGCACGAGAAAAGCAATCGATCGTAAAAAGTGCAATCAGTAAGTTCCGGGCAGCTATTCAGTTGCAATTTGATTTCCATCGAGCAATTTACAACCTTGGAACTGTATTGTATGGATTGGCGGAGGATACACTAAGAACTGGGGGATCTGGAAATCCCAAAGAAGTTTCACCTAATGAGTTATACAGTCAATCAGCTATCTACATTGCAGCTGCTCATGCTCTGAAACCAAATTACAATGTAAGCATCTCATCCTTTTCTTCAATCAACTTTAGCTAA

Protein Analysis

384

Amino Acids

42.31

Weight (kDa)

4.79

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011475)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccII CGCG 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 4 cut(s) 12, 167, 253, 998
AclI AACGTT 1 cut(s) 594
AclWI GGATC 3 cut(s) 182, 220, 1030
AcuI CTGAAG 2 cut(s) 284, 780
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 2 cut(s) 289, 748
AgsI TTSAA 2 cut(s) 322, 1140
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 1 cut(s) 825
AluBI AGCT 9 cut(s) 182, 262, 360, 758, 800, 932, 1073, 1088, 1152
AluI AGCT 9 cut(s) 182, 262, 360, 758, 800, 932, 1073, 1088, 1152
Alw21I GWGCWC 1 cut(s) 417
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 3 cut(s) 182, 220, 1030
AlwNI CAGNNNCTG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 2 cut(s) 254, 777
ApeKI GCWGC 6 cut(s) 182, 425, 500, 929, 1085, 1088
AspLEI GCGC 3 cut(s) 124, 568, 869
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 2 cut(s) 184, 1038
AvaII GGWCC 1 cut(s) 487
BaeGI GKGCMC 2 cut(s) 102, 680
BanI GGYRCC 1 cut(s) 455
BauI CACGAG 2 cut(s) 95, 882
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 417
BbvI GCAGC 6 cut(s) 169, 412, 487, 941, 1075, 1097
BccI CCATC 3 cut(s) 461, 678, 963
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 1 cut(s) 827
BciVI GTATCC 1 cut(s) 997
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 2 cut(s) 357, 516
BfmI CTRYAG 3 cut(s) 183, 575, 854
BfoI RGCGCY 2 cut(s) 125, 569
BfuI GTATCC 1 cut(s) 997
BisI GCNGC 7 cut(s) 183, 254, 426, 501, 930, 1086, 1089
BlsI GCNGC 7 cut(s) 184, 255, 427, 502, 931, 1087, 1090
Bme1390I CCNGG 2 cut(s) 827, 926
Bme18I GGWCC 1 cut(s) 487
BmeRI GACNNNNNGTC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 3 cut(s) 284, 457, 488
BmrFI CCNGG 2 cut(s) 827, 926
BmrI ACTGGG 2 cut(s) 850, 1026
BmsI GCATC 6 cut(s) 94, 193, 538, 616, 682, 1131
BmuI ACTGGG 2 cut(s) 850, 1026
BpiI GAAGAC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 1 cut(s) 926
Bsa29I ATCGAT 1 cut(s) 896
BsaBI GATNNNNATC 1 cut(s) 954
BsaHI GRCGYC 1 cut(s) 221
BsaJI CCNNGG 3 cut(s) 331, 825, 973
BsaWI WCCGGW 2 cut(s) 64, 142
Bse1I ACTGG 4 cut(s) 234, 818, 845, 1021
Bse3DI GCAATG 2 cut(s) 435, 1080
Bse8I GATNNNNATC 1 cut(s) 954
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 827
BseCI ATCGAT 1 cut(s) 896
BseDI CCNNGG 3 cut(s) 331, 825, 973
BseGI GGATG 2 cut(s) 208, 1127
BseJI GATNNNNATC 1 cut(s) 954
BseMI GCAATG 2 cut(s) 435, 1080
BseMII CTCAG 2 cut(s) 249, 877
BseNI ACTGG 4 cut(s) 234, 818, 845, 1021
BseRI GAGGAG 1 cut(s) 653
BseSI GKGCMC 2 cut(s) 102, 680
BseXI GCAGC 6 cut(s) 169, 412, 487, 941, 1075, 1097
BsgI GTGCAG 2 cut(s) 606, 864
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 900
BshFI GGCC 2 cut(s) 256, 779
BshNI GGYRCC 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 896
BsiEI CGRYCG 1 cut(s) 900
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 3 cut(s) 65, 143, 925
BsiWI CGTACG 1 cut(s) 287
BslFI GGGAC 4 cut(s) 13, 259, 807, 858
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 4 cut(s) 13, 259, 807, 858
BsnI GGCC 2 cut(s) 256, 779
Bsp1286I GDGCHC 3 cut(s) 102, 417, 680
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
BspACI CCGC 4 cut(s) 12, 167, 253, 998
BspANI GGCC 2 cut(s) 256, 779
BspCNI CTCAG 2 cut(s) 250, 876
BspDI ATCGAT 1 cut(s) 896
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 284, 457, 488
BspMAI CTGCAG 3 cut(s) 187, 579, 858
BspPI GGATC 3 cut(s) 182, 220, 1030
BspT107I GGYRCC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 435, 1080
BsrI ACTGG 4 cut(s) 234, 818, 845, 1021
BssECI CCNNGG 3 cut(s) 331, 825, 973
BssMI GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
BssNI GRCGYC 1 cut(s) 221
BssSI CACGAG 2 cut(s) 95, 882
BssT1I CCWWGG 2 cut(s) 331, 973
Bst2BI CACGAG 2 cut(s) 95, 882
Bst2UI CCWGG 1 cut(s) 827
Bst4CI ACNGT 7 cut(s) 91, 196, 371, 383, 821, 982, 1064
BstACI GRCGYC 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 362, 646, 777, 879
BstDEI CTNAG 3 cut(s) 258, 863, 1010
BstF5I GGATG 2 cut(s) 208, 1127
BstFNI CGCG 1 cut(s) 253
BstH2I RGCGCY 2 cut(s) 125, 569
BstHHI GCGC 3 cut(s) 124, 568, 869
BstKTI GATC 8 cut(s) 177, 190, 228, 441, 476, 727, 900, 1025
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
BstMCI CGRYCG 1 cut(s) 900
BstMWI GCNNNNNNNGC 4 cut(s) 113, 259, 574, 1094
BstNI CCWGG 1 cut(s) 827
BstSCI CCNGG 2 cut(s) 825, 924
BstSFI CTRYAG 3 cut(s) 183, 575, 854
BstSLI GKGCMC 2 cut(s) 102, 680
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 6 cut(s) 169, 412, 487, 941, 1075, 1097
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 2 cut(s) 187, 1022
BstYI RGATCY 2 cut(s) 187, 1022
Bsu15I ATCGAT 1 cut(s) 896
BsuI GTATCC 1 cut(s) 997
BsuRI GGCC 2 cut(s) 256, 779
BsuTUI ATCGAT 1 cut(s) 896
BtsCI GGATG 2 cut(s) 208, 1127
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 4 cut(s) 362, 646, 777, 879
CaiI CAGNNNCTG 1 cut(s) 131
CciI TCATGA 1 cut(s) 688
CfoI GCGC 3 cut(s) 124, 568, 869
Cfr13I GGNCC 1 cut(s) 487
ClaI ATCGAT 1 cut(s) 896
CseI GACGC 1 cut(s) 229
Csp6I GTAC 2 cut(s) 288, 747
CviAII CATG 2 cut(s) 689, 1094
CviQI GTAC 2 cut(s) 288, 747
DdeI CTNAG 3 cut(s) 258, 863, 1010
DpnI GATC 8 cut(s) 176, 189, 227, 440, 475, 726, 899, 1024
DpnII GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
DriI GACNNNNNGTC 1 cut(s) 25
Eam1105I GACNNNNNGTC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 1013
Eco130I CCWWGG 2 cut(s) 331, 973
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 2 cut(s) 284, 780
EcoO109I RGGNCCY 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 825
EcoT14I CCWWGG 2 cut(s) 331, 973
ErhI CCWWGG 2 cut(s) 331, 973
FaeI CATG 2 cut(s) 692, 1097
FaqI GGGAC 4 cut(s) 13, 259, 807, 858
FatI CATG 2 cut(s) 688, 1093
FauI CCCGC 1 cut(s) 19
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 7 cut(s) 183, 254, 426, 501, 930, 1086, 1089
FokI GGATG 2 cut(s) 215, 1114
Fsp4HI GCNGC 7 cut(s) 183, 254, 426, 501, 930, 1086, 1089
FspBI CTAG 2 cut(s) 357, 516
GlaI GCGC 3 cut(s) 123, 567, 868
GluI GCNGC 7 cut(s) 183, 254, 426, 501, 930, 1086, 1089
HaeII RGCGCY 2 cut(s) 125, 569
HaeIII GGCC 2 cut(s) 256, 779
HapII CCGG 3 cut(s) 65, 143, 925
HgaI GACGC 1 cut(s) 229
HhaI GCGC 3 cut(s) 124, 568, 869
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 2 cut(s) 692, 1097
Hin6I GCGC 3 cut(s) 122, 566, 867
HinP1I GCGC 3 cut(s) 122, 566, 867
HinfI GANTC 5 cut(s) 39, 80, 134, 353, 605
HpaII CCGG 3 cut(s) 65, 143, 925
HphI GGTGA 2 cut(s) 184, 1038
Hpy166II GTNNAC 2 cut(s) 6, 294
Hpy188I TCNGA 4 cut(s) 192, 241, 724, 1101
Hpy188III TCNNGA 5 cut(s) 65, 536, 602, 689, 1026
Hpy8I GTNNAC 2 cut(s) 6, 294
Hpy99I CGWCG 3 cut(s) 196, 223, 278
HpyAV CCTTC 3 cut(s) 236, 272, 627
HpyCH4III ACNGT 7 cut(s) 91, 196, 371, 383, 821, 982, 1064
HpyCH4IV ACGT 2 cut(s) 290, 594
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 259, 574, 1094
HpyF3I CTNAG 3 cut(s) 258, 863, 1010
HpySE526I ACGT 2 cut(s) 290, 594
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 2 cut(s) 692, 1097
HspAI GCGC 3 cut(s) 122, 566, 867
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
LmnI GCTCC 1 cut(s) 282
Lsp1109I GCAGC 6 cut(s) 169, 412, 487, 941, 1075, 1097
LweI GCATC 6 cut(s) 94, 193, 538, 616, 682, 1131
MaeI CTAG 2 cut(s) 357, 516
MaeII ACGT 2 cut(s) 290, 594
MaeIII GTNAC 2 cut(s) 371, 448
MalI GATC 8 cut(s) 176, 189, 227, 440, 475, 726, 899, 1024
MboI GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
MboII GAAGA 5 cut(s) 29, 277, 398, 773, 1128
MfeI CAATTG 2 cut(s) 559, 870
MflI RGATCY 2 cut(s) 187, 1022
MhlI GDGCHC 3 cut(s) 102, 417, 680
MluCI AATT 7 cut(s) 559, 703, 787, 870, 944, 963, 1108
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 67, 215
MnlI CCTC 9 cut(s) 33, 104, 193, 294, 501, 631, 634, 655, 994
MroI TCCGGA 1 cut(s) 64
MseI TTAA 2 cut(s) 312, 834
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 1088
MspI CCGG 3 cut(s) 65, 143, 925
MspR9I CCNGG 2 cut(s) 827, 926
MunI CAATTG 2 cut(s) 559, 870
MvaI CCWGG 1 cut(s) 827
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 4 cut(s) 113, 259, 574, 1094
NciI CCSGG 1 cut(s) 926
NdeII GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
NlaIII CATG 2 cut(s) 692, 1097
NlaIV GGNNCC 3 cut(s) 284, 457, 488
NmuCI GTSAC 1 cut(s) 448
PagI TCATGA 1 cut(s) 688
PfeI GAWTC 4 cut(s) 80, 134, 353, 605
Pfl23II CGTACG 1 cut(s) 287
PkrI GCNGC 7 cut(s) 184, 255, 427, 502, 931, 1087, 1090
Ple19I CGATCG 1 cut(s) 900
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PpuMI RGGWCCY 1 cut(s) 487
Psp1406I AACGTT 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 825
PspGI CCWGG 1 cut(s) 825
PspLI CGTACG 1 cut(s) 287
PspN4I GGNNCC 3 cut(s) 284, 457, 488
PspPI GGNCC 1 cut(s) 487
PspPPI RGGWCCY 1 cut(s) 487
PstI CTGCAG 3 cut(s) 187, 579, 858
PstNI CAGNNNCTG 1 cut(s) 131
PsuI RGATCY 2 cut(s) 187, 1022
PvuI CGATCG 1 cut(s) 900
PvuII CAGCTG 1 cut(s) 1088
RsaI GTAC 2 cut(s) 289, 748
RsaNI GTAC 2 cut(s) 288, 747
RseI CAYNNNNRTG 1 cut(s) 420
SaqAI TTAA 2 cut(s) 312, 834
SatI GCNGC 7 cut(s) 183, 254, 426, 501, 930, 1086, 1089
Sau3AI GATC 8 cut(s) 174, 187, 225, 438, 473, 724, 897, 1022
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 827, 926
SduI GDGCHC 3 cut(s) 102, 417, 680
SfaNI GCATC 6 cut(s) 94, 193, 538, 616, 682, 1131
SfcI CTRYAG 3 cut(s) 183, 575, 854
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 7 cut(s) 559, 703, 787, 870, 944, 963, 1108
SsiI CCGC 4 cut(s) 12, 167, 253, 998
SspMI CTAG 2 cut(s) 357, 516
StyD4I CCNGG 2 cut(s) 825, 924
StyI CCWWGG 2 cut(s) 331, 973
TaaI ACNGT 7 cut(s) 91, 196, 371, 383, 821, 982, 1064
TaiI ACGT 2 cut(s) 293, 597
TaqI TCGA 5 cut(s) 177, 472, 727, 896, 958
TasI AATT 7 cut(s) 559, 703, 787, 870, 944, 963, 1108
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 4 cut(s) 80, 134, 353, 605
Tru1I TTAA 2 cut(s) 312, 834
Tru9I TTAA 2 cut(s) 312, 834
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 6 cut(s) 182, 425, 500, 929, 1085, 1088
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 366, 677, 807
TspGWI ACGGA 2 cut(s) 15, 51
TspRI CASTG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 487
XspI CTAG 2 cut(s) 357, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.