MD06G1120300.v1.1

Serine hydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
26017413 .. 26021730
4318 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1120300.v1.1.491

Sequence Viewer

Length: 1389 bp
ATGGCTGCAATGAGAAAAACCAAGTTGGTTTTAACGTTGGTCGGAAGAGTCATAAACGAGGCTGTGAGCTTCATTGTGTTTTCGGTTCTCGACCTTGTGGATTTCATCCTTTGTTTTGTGTATAAAGTTGCTGATTTTTTCATCGAAGCAGAATGGAAGCCTTGCTATTGCTCCTCCTCCAAGGAAACCATTACCGGCAGTGGCAAAATCTTGGTCTCCGAACAAGGTGAGTCAAAAATTGTGTGCCTTAGCTCAACCAAGCTGCAACTTGAGGAGATCTCGGACACGCTCTACACTCGCCCTTCGCTCTTGTCCGAGGTCTCAAAGCTGAGCATGAAGGAGATCAAGAAAGGAACTGCTCGATCGACCTTCTCGGTCAACTCTACCATTGTTGAAATGCTTGAAGGGAAGATTGGAGGCCAACATTTGCATCCAATCCCAAGGTGGTCGGACTGTGATTGCAAATTTTGCACATCTTGGACCTCTAATTGCACAGAAACACTCTTTGTCAAAACCGATGGACCTAGAGAGTATAAGGGACAAGAAGATGTTCTATTCATACATGGGTTCATTTCATCATCAGCATTTTGGACAGAGACATTGTTCCCAAACTTTTCAAGTGCTGCAAAATCAAGTTTTAGACTTTTTGCTATTGATCTGTTGGGGTTTGGGAGGAGTCCAAAGCCAACCGACTCCATGTACACACTTAGAGAGCATCTGGAGATCATCGAAAGATCTGTGCTTGAACCCAACAATGTTAAATCCTTCCACATTGTGGCTCATTCATTGGGTTGCATTCTTGCCCTTGCTCTTGCTGTTAAACACCCTTCCTCCATCAAGTCCCTCACCTTACTTGCACCTCCATATTACCCAATACCAAAGGGAGAACAAGCAACACAATACGTGATGAGGAGGGTGGCGCCACGGCGGGTGTGGCCAGTGATTGCATTCGGCGCCTCCATTGCTTGCTGGTACGAGCACATCTCAAGGACTATTTGTTTGCTCATTTGCAAGAACCACCGGTTTGTGGAATTTCTTACCAAACTAATCACCAGAAACAGAATAAGGACTTTCTTGCTCGAAGGTTTCTTCTGTCACACCCATAACGCAGCATGGCACACATTGCACAACATTATATGTGGCACTGCCGGCAAGATGGAGAAATACCTAGACGCTGTCCGAGACAATCTAAAATGCGACGTAAATTTGTTTCATGGCAAAGATGATGAGCTTATCCCGGTCGAGTGCAGCTATAACGTGCAATCCAAAATTCCTCGGGCACGTGTGAAGGTGATTGACAAGAAAGATCACATTACCATCGTGGTCGGAAGACAGAGAGCTTTTGCTAGAGAGCTTGAGAATATTTGGAGAAATTCATCAAGGGATTAA

Protein Analysis

463

Amino Acids

52.4

Weight (kDa)

8.95

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 184 - 440 1.5e-27 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 184 - 448 7.1e-16 Alpha/beta hydrolase family
Hydrolase_4 PF12146 184 - 437 1.7e-10 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011322)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 919, 953
AccB7I CCANNNNNTGG 1 cut(s) 775
AciI CCGC 1 cut(s) 928
AclI AACGTT 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 935
AcsI RAATTY 5 cut(s) 464, 1031, 1204, 1269, 1372
AcvI CACGTG 1 cut(s) 1283
AcyI GRCGYC 2 cut(s) 920, 954
AdeI CACNNNGTG 1 cut(s) 775
AfaI GTAC 2 cut(s) 701, 974
AfiI CCNNNNNNNGG 2 cut(s) 775, 1027
AflIII ACRYGT 1 cut(s) 1282
AgeI ACCGGT 1 cut(s) 1020
AgsI TTSAA 4 cut(s) 395, 404, 618, 746
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AluBI AGCT 8 cut(s) 69, 252, 262, 328, 1231, 1251, 1340, 1354
AluI AGCT 8 cut(s) 69, 252, 262, 328, 1231, 1251, 1340, 1354
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 4 cut(s) 220, 325, 590, 1176
Ama87I CYCGRG 1 cut(s) 1275
AoxI GGCC 2 cut(s) 418, 935
ApeKI GCWGC 5 cut(s) 5, 262, 623, 1109, 1248
ApoI RAATTY 5 cut(s) 464, 1031, 1204, 1269, 1372
ArsI GACNNNNNNTTYG 4 cut(s) 198, 230, 982, 1014
AsiGI ACCGGT 1 cut(s) 1020
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 2 cut(s) 922, 956
AspS9I GGNCC 2 cut(s) 480, 521
AsuC2I CCSGG 1 cut(s) 1238
AsuHPI GGTGA 4 cut(s) 239, 838, 1042, 1303
AvaI CYCGRG 1 cut(s) 1275
AvaII GGWCC 2 cut(s) 480, 521
BaeGI GKGCMC 1 cut(s) 1282
BalI TGGCCA 1 cut(s) 937
BanI GGYRCC 2 cut(s) 919, 953
BbrPI CACGTG 1 cut(s) 1283
BbsI GAAGAC 1 cut(s) 1336
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 4 cut(s) 249, 610, 1121, 1260
BccI CCATC 4 cut(s) 512, 842, 1150, 1325
BceAI ACGGC 1 cut(s) 941
BcnI CCSGG 1 cut(s) 1238
BcoDI GTCTC 4 cut(s) 220, 325, 590, 1176
BfaI CTAG 3 cut(s) 525, 1169, 1347
BfoI RGCGCY 2 cut(s) 923, 957
BglII AGATCT 2 cut(s) 276, 734
BisI GCNGC 5 cut(s) 6, 263, 624, 1110, 1249
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 5 cut(s) 7, 264, 625, 1111, 1250
Bme1390I CCNGG 1 cut(s) 1238
Bme18I GGWCC 2 cut(s) 480, 521
BmeT110I CYCGRG 1 cut(s) 1275
BmgT120I GGNCC 2 cut(s) 480, 521
BmiI GGNNCC 2 cut(s) 921, 955
BmrFI CCNGG 1 cut(s) 1238
BmsI GCATC 2 cut(s) 439, 724
BpiI GAAGAC 1 cut(s) 1336
BplI GAGNNNNNCTC 4 cut(s) 263, 295, 968, 1000
BpmI CTGGAG 1 cut(s) 740
Bpu10I CCTNAGC 1 cut(s) 248
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 3 cut(s) 290, 970, 1376
BpuMI CCSGG 1 cut(s) 1238
BsaAI YACGTR 2 cut(s) 904, 1283
BsaHI GRCGYC 2 cut(s) 920, 954
BsaI GGTCTC 2 cut(s) 220, 325
BsaJI CCNNGG 5 cut(s) 180, 315, 440, 923, 1274
BsaWI WCCGGW 1 cut(s) 1020
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 2 cut(s) 775, 1027
Bse118I RCCGGY 3 cut(s) 194, 1020, 1148
Bse1I ACTGG 1 cut(s) 938
Bse3DI GCAATG 3 cut(s) 15, 960, 1121
BseDI CCNNGG 5 cut(s) 180, 315, 440, 923, 1274
BseGI GGATG 2 cut(s) 105, 430
BseLI CCNNNNNNNGG 2 cut(s) 775, 1027
BseMI GCAATG 3 cut(s) 15, 960, 1121
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 938
BseRI GAGGAG 5 cut(s) 163, 166, 287, 688, 925
BseSI GKGCMC 1 cut(s) 1282
BseXI GCAGC 4 cut(s) 249, 610, 1121, 1260
BsgI GTGCAG 1 cut(s) 1267
Bsh1285I CGRYCG 2 cut(s) 365, 1242
BshFI GGCC 2 cut(s) 420, 937
BshNI GGYRCC 2 cut(s) 919, 953
BshTI ACCGGT 1 cut(s) 1020
BsiEI CGRYCG 2 cut(s) 365, 1242
BsiHKAI GWGCWC 1 cut(s) 981
BsiHKCI CYCGRG 1 cut(s) 1275
BsiSI CCGG 4 cut(s) 195, 1021, 1149, 1238
BslFI GGGAC 2 cut(s) 552, 826
BslI CCNNNNNNNGG 2 cut(s) 775, 1027
BsmAI GTCTC 4 cut(s) 220, 325, 590, 1176
BsmFI GGGAC 2 cut(s) 552, 826
BsmI GAATGC 2 cut(s) 795, 947
BsnI GGCC 2 cut(s) 420, 937
Bso31I GGTCTC 2 cut(s) 220, 325
BsoBI CYCGRG 1 cut(s) 1275
Bsp1286I GDGCHC 2 cut(s) 981, 1282
Bsp1407I TGTACA 1 cut(s) 699
Bsp143I GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
Bsp1720I GCTNAGC 1 cut(s) 329
BspACI CCGC 1 cut(s) 928
BspANI GGCC 2 cut(s) 420, 937
BspCNI CTCAG 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 921, 955
BspT107I GGYRCC 2 cut(s) 919, 953
BspTNI GGTCTC 2 cut(s) 220, 325
BsrDI GCAATG 3 cut(s) 15, 960, 1121
BsrFI RCCGGY 3 cut(s) 194, 1020, 1148
BsrGI TGTACA 1 cut(s) 699
BsrI ACTGG 1 cut(s) 938
BssAI RCCGGY 3 cut(s) 194, 1020, 1148
BssECI CCNNGG 5 cut(s) 180, 315, 440, 923, 1274
BssMI GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
BssNI GRCGYC 2 cut(s) 920, 954
BssT1I CCWWGG 2 cut(s) 180, 440
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 2 cut(s) 920, 954
BstAPI GCANNNNNTGC 2 cut(s) 468, 1123
BstAUI TGTACA 1 cut(s) 699
BstBAI YACGTR 2 cut(s) 904, 1283
BstC8I GCNNGC 2 cut(s) 967, 1150
BstDEI CTNAG 3 cut(s) 248, 329, 707
BstDSI CCRYGG 1 cut(s) 923
BstF5I GGATG 2 cut(s) 105, 430
BstH2I RGCGCY 2 cut(s) 923, 957
BstHHI GCGC 2 cut(s) 922, 956
BstKTI GATC 7 cut(s) 279, 345, 365, 658, 726, 737, 1309
BstMAI GTCTC 4 cut(s) 220, 325, 590, 1176
BstMBI GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
BstMCI CGRYCG 2 cut(s) 365, 1242
BstMWI GCNNNNNNNGC 6 cut(s) 468, 934, 953, 962, 1123, 1149
BstSCI CCNGG 1 cut(s) 1236
BstSLI GKGCMC 1 cut(s) 1282
BstV1I GCAGC 4 cut(s) 249, 610, 1121, 1260
BstV2I GAAGAC 1 cut(s) 1336
BstX2I RGATCY 2 cut(s) 276, 734
BstYI RGATCY 2 cut(s) 276, 734
BsuRI GGCC 2 cut(s) 420, 937
BtgI CCRYGG 1 cut(s) 923
BtsCI GGATG 2 cut(s) 105, 430
BtsI GCAGTG 2 cut(s) 205, 1143
BtsIMutI CAGTG 3 cut(s) 205, 945, 1143
Cac8I GCNNGC 2 cut(s) 967, 1150
CfoI GCGC 2 cut(s) 922, 956
Cfr10I RCCGGY 3 cut(s) 194, 1020, 1148
Cfr13I GGNCC 2 cut(s) 480, 521
CseI GACGC 1 cut(s) 1181
Csp6I GTAC 2 cut(s) 700, 973
CspAI ACCGGT 1 cut(s) 1020
CviAII CATG 5 cut(s) 334, 563, 697, 1113, 1214
CviQI GTAC 2 cut(s) 700, 973
DdeI CTNAG 3 cut(s) 248, 329, 707
DinI GGCGCC 2 cut(s) 921, 955
DpnI GATC 7 cut(s) 278, 344, 364, 657, 725, 736, 1308
DpnII GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
DraIII CACNNNGTG 1 cut(s) 775
EaeI YGGCCR 1 cut(s) 935
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 180, 440
Eco31I GGTCTC 2 cut(s) 220, 325
Eco47I GGWCC 2 cut(s) 480, 521
Eco72I CACGTG 1 cut(s) 1283
Eco88I CYCGRG 1 cut(s) 1275
EcoT14I CCWWGG 2 cut(s) 180, 440
EgeI GGCGCC 2 cut(s) 921, 955
EheI GGCGCC 2 cut(s) 921, 955
ErhI CCWWGG 2 cut(s) 180, 440
FaeI CATG 5 cut(s) 337, 566, 700, 1116, 1217
FaqI GGGAC 2 cut(s) 552, 826
FatI CATG 5 cut(s) 333, 562, 696, 1112, 1213
FauI CCCGC 1 cut(s) 921
Fnu4HI GCNGC 5 cut(s) 6, 263, 624, 1110, 1249
FokI GGATG 2 cut(s) 92, 417
Fsp4HI GCNGC 5 cut(s) 6, 263, 624, 1110, 1249
FspBI CTAG 3 cut(s) 525, 1169, 1347
GlaI GCGC 2 cut(s) 921, 955
GluI GCNGC 5 cut(s) 6, 263, 624, 1110, 1249
GsuI CTGGAG 1 cut(s) 740
HaeII RGCGCY 2 cut(s) 923, 957
HaeIII GGCC 2 cut(s) 420, 937
HapII CCGG 4 cut(s) 195, 1021, 1149, 1238
HgaI GACGC 1 cut(s) 1181
HhaI GCGC 2 cut(s) 922, 956
Hin1I GRCGYC 2 cut(s) 920, 954
Hin1II CATG 5 cut(s) 337, 566, 700, 1116, 1217
Hin6I GCGC 2 cut(s) 920, 954
HinP1I GCGC 2 cut(s) 920, 954
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 4 cut(s) 48, 230, 676, 692
HpaII CCGG 4 cut(s) 195, 1021, 1149, 1238
HphI GGTGA 4 cut(s) 239, 838, 1042, 1303
Hpy166II GTNNAC 2 cut(s) 379, 702
Hpy188I TCNGA 7 cut(s) 44, 220, 283, 316, 451, 1181, 1328
Hpy188III TCNNGA 3 cut(s) 89, 346, 719
Hpy8I GTNNAC 2 cut(s) 379, 702
Hpy99I CGWCG 1 cut(s) 1202
HpyAV CCTTC 8 cut(s) 312, 331, 379, 398, 775, 837, 1076, 1282
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4IV ACGT 5 cut(s) 35, 903, 1200, 1257, 1282
HpyF10VI GCNNNNNNNGC 6 cut(s) 468, 934, 953, 962, 1123, 1149
HpyF3I CTNAG 3 cut(s) 248, 329, 707
HpySE526I ACGT 5 cut(s) 35, 903, 1200, 1257, 1282
Hsp92I GRCGYC 2 cut(s) 920, 954
Hsp92II CATG 5 cut(s) 337, 566, 700, 1116, 1217
HspAI GCGC 2 cut(s) 920, 954
KasI GGCGCC 2 cut(s) 919, 953
KroI GCCGGC 1 cut(s) 1148
KroNI GCCGGC 1 cut(s) 1150
Kzo9I GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 8 cut(s) 208, 704, 951, 955, 1034, 1066, 1162, 1251
Lsp1109I GCAGC 4 cut(s) 249, 610, 1121, 1260
LweI GCATC 2 cut(s) 439, 724
MaeI CTAG 3 cut(s) 525, 1169, 1347
MaeII ACGT 5 cut(s) 35, 903, 1200, 1257, 1282
MaeIII GTNAC 1 cut(s) 1094
MalI GATC 7 cut(s) 278, 344, 364, 657, 725, 736, 1308
MboI GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
MboII GAAGA 5 cut(s) 57, 421, 557, 1081, 1341
MflI RGATCY 2 cut(s) 276, 734
MhlI GDGCHC 2 cut(s) 981, 1282
MlsI TGGCCA 1 cut(s) 937
MluCI AATT 7 cut(s) 237, 464, 487, 1031, 1204, 1269, 1372
MluNI TGGCCA 1 cut(s) 937
Mly113I GGCGCC 2 cut(s) 920, 954
MlyI GAGTC 4 cut(s) 57, 239, 685, 686
MmeI TCCRAC 3 cut(s) 22, 429, 1306
Mox20I TGGCCA 1 cut(s) 937
MroNI GCCGGC 1 cut(s) 1148
MroXI GAANNNNTTC 1 cut(s) 549
MscI TGGCCA 1 cut(s) 937
MseI TTAA 4 cut(s) 32, 759, 819, 1387
Msp20I TGGCCA 1 cut(s) 937
MspI CCGG 4 cut(s) 195, 1021, 1149, 1238
MspR9I CCNGG 1 cut(s) 1238
Mva1269I GAATGC 2 cut(s) 795, 947
MwoI GCNNNNNNNGC 6 cut(s) 468, 934, 953, 962, 1123, 1149
NaeI GCCGGC 1 cut(s) 1150
NarI GGCGCC 2 cut(s) 920, 954
NciI CCSGG 1 cut(s) 1238
NdeII GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
NgoMIV GCCGGC 1 cut(s) 1148
NlaIII CATG 5 cut(s) 337, 566, 700, 1116, 1217
NlaIV GGNNCC 2 cut(s) 921, 955
NmuCI GTSAC 1 cut(s) 1094
PctI GAATGC 2 cut(s) 795, 947
PdiI GCCGGC 1 cut(s) 1150
PdmI GAANNNNTTC 1 cut(s) 549
PflFI GACNNNGTC 1 cut(s) 1175
PflMI CCANNNNNTGG 1 cut(s) 775
PinAI ACCGGT 1 cut(s) 1020
PkrI GCNGC 5 cut(s) 7, 264, 625, 1111, 1250
Ple19I CGATCG 1 cut(s) 365
PleI GAGTC 4 cut(s) 56, 238, 684, 686
PluTI GGCGCC 2 cut(s) 923, 957
PmaCI CACGTG 1 cut(s) 1283
PmlI CACGTG 1 cut(s) 1283
PpsI GAGTC 4 cut(s) 56, 238, 684, 686
Ppu21I YACGTR 2 cut(s) 904, 1283
Psp1406I AACGTT 1 cut(s) 35
PspCI CACGTG 1 cut(s) 1283
PspN4I GGNNCC 2 cut(s) 921, 955
PspPI GGNCC 2 cut(s) 480, 521
PsuI RGATCY 2 cut(s) 276, 734
PsyI GACNNNGTC 1 cut(s) 1175
PvuI CGATCG 1 cut(s) 365
RsaI GTAC 2 cut(s) 701, 974
RsaNI GTAC 2 cut(s) 700, 973
SaqAI TTAA 4 cut(s) 32, 759, 819, 1387
SatI GCNGC 5 cut(s) 6, 263, 624, 1110, 1249
Sau3AI GATC 7 cut(s) 276, 342, 362, 655, 723, 734, 1306
Sau96I GGNCC 2 cut(s) 480, 521
SchI GAGTC 4 cut(s) 57, 239, 685, 686
ScrFI CCNGG 1 cut(s) 1238
SduI GDGCHC 2 cut(s) 981, 1282
SfaNI GCATC 2 cut(s) 439, 724
SfoI GGCGCC 2 cut(s) 921, 955
SinI GGWCC 2 cut(s) 480, 521
SmlI CTYRAG 3 cut(s) 269, 985, 1355
SmoI CTYRAG 3 cut(s) 269, 985, 1355
Sse9I AATT 7 cut(s) 237, 464, 487, 1031, 1204, 1269, 1372
SsiI CCGC 1 cut(s) 928
SspDI GGCGCC 2 cut(s) 919, 953
SspI AATATT 1 cut(s) 1363
SspMI CTAG 3 cut(s) 525, 1169, 1347
StyD4I CCNGG 1 cut(s) 1236
StyI CCWWGG 2 cut(s) 180, 440
TaaI ACNGT 1 cut(s) 455
TaiI ACGT 5 cut(s) 38, 906, 1203, 1260, 1285
TaqI TCGA 7 cut(s) 90, 144, 361, 365, 729, 1080, 1242
TaqII GACCGA 1 cut(s) 364
TasI AATT 7 cut(s) 237, 464, 487, 1031, 1204, 1269, 1372
TatI WGTACW 1 cut(s) 699
Tru1I TTAA 4 cut(s) 32, 759, 819, 1387
Tru9I TTAA 4 cut(s) 32, 759, 819, 1387
TscAI CASTG 3 cut(s) 205, 945, 1150
TseFI GTSAC 1 cut(s) 1094
TseI GCWGC 5 cut(s) 5, 262, 623, 1109, 1248
Tsp45I GTSAC 1 cut(s) 1094
TspRI CASTG 3 cut(s) 205, 945, 1150
Tth111I GACNNNGTC 1 cut(s) 1175
Van91I CCANNNNNTGG 1 cut(s) 775
VpaK11BI GGWCC 2 cut(s) 480, 521
XapI RAATTY 5 cut(s) 464, 1031, 1204, 1269, 1372
XcmI CCANNNNNNNNNTGG 2 cut(s) 441, 930
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 3 cut(s) 525, 1169, 1347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.