Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011322

Physical Location & Seq

Genomic Coordinates Reverse (-)

6486733 .. 6490434

Gene Structure 3702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGATGCAATGGGAAAAACCAGATCAGTTCTAACATTGACAGGAAGATTCATAAACGAGGCTGTGAGCTTCTTTGTCTTCTCCATTCTCGACCTTGTCGATTTCTTCCTGTGCTTTCTCTACAAAGTTGCGGACCTTTTCTTTGAAGCCGAATGGAAGCCTTGCTACTGCTCATCTTCCAAAGAGGCCATTACGAACAGCGGCAAGATCTTGCTCTCAGAGCAAGGCGAGTCGAAAATCGTCTGCCTTAGCTCGACAAAGCTACAGCTCGAGGAGATCTCAGACACACTCTACACGCGCCCTTCGCTCTTATCCGAGGTCTCCAAGATGACTACGAGGGAGAACAAGAGAGGTTCGGCCGTTCGATCCACGTTCACGGTCAACTCCACCATCGTCGAAATGCTTCAGGGAAAGATTGGAGGCCAAATATGTCACCCTATCCCGAGGTGGTCGGATTGTGACTGTAAATTCTGCACTTCTTGGACCTCTTCTTGCAAAGAAACCCTCTATGTTAAAGCTGAAGGACCCAAAGATCATGATGCACGAGAAGATGTGTTATTCATTCATGGGTTTATTTCATCATCGGCATTCTGGACGGAGACGGTGTTCCCAAACCTTTCAAGCGCTGCAAAATCAAATTTTAGGCTTTTTGCTATTGATCTTTTGGGGTTTGGAAGGAGTCCAAAGCCAGCCGACTCCATGTACACCCTCAGAGAACACTTGGAAATGATTGAACAGTCCGTGCTTGAACCTCATAAAGTTAAATCCTTCCACATTGTGGCTCATTCGTTAGGCTGCATTTTGGCCCTTGCCCTTGCCGTTAAACACCCCAACTCCATCAAATCCCTCACTTTACTTGCCCCGCCATACTTCCCTATACCAAAAGGAGCACAAGCAACACAACATATGATGAGGATGGTGGCTCCGAGACGTGTTTGGCCGGTGATAGCATTTGGTGCGTCAATTGCGTGTTGGTACGAGCACATCTCACGGACGGTGTGCCTTCTCATTTGCAAGAACCACCGTTTTGTGGAGTTTGTTGCCAAACTTGTGACTAGAAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0006725 GO:0006810 GO:0006833 GO:0006950 GO:0006952 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009505 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010115 GO:0010143 GO:0010148 GO:0010345 GO:0010556 GO:0010557 GO:0010565 GO:0010604 GO:0019216 GO:0019222 GO:0019438 GO:0019747 GO:0019748 GO:0022622 GO:0030312 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033993 GO:0042044 GO:0042221 GO:0042335 GO:0043170 GO:0043207 GO:0043455 GO:0044237 GO:0044249 GO:0044464 GO:0044550 GO:0046890 GO:0048364 GO:0048518 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0071944 GO:0080090 GO:0080134 GO:0090696 GO:0097305 GO:0098542 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1902584 GO:1902930 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

355

Amino Acids

39.93

Weight (kDa)

8.82

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	181 - 308	1.4e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	185 - 294	1.5e-25	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	185 - 311	5.3e-16	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64670 AT1G64670 AT1G64670 AT4G24140
fragaria_vesca	FvH4_5g10840 FvH4_5g10840
malus_domestica	MD00G1139900.v1.1 MD06G1120300.v1.1
prunus_persica	Prupe.5G130800_v2.0.a1
pyrus_communis	pycom14g11220
rosa_chinensis	RchiOBHm_Chr7g0187321
rosa_laevigata	RLG00000004795
rosa_multiflora	Rmu_sc0001758.1_g000014
rosa_roxburghii	Rroxscaffold_3G00267620
rosa_rugosa	Rorug06G0480500
rosa_samantha	Rh7AG085000 Rh7BG077600 Rh7CG086000 Rh7DG087100
rosa_wichuraiana	Rw7G007470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccII	CGCG	1 cut(s)	298
AciI	CCGC	3 cut(s)	131, 201, 863
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	2 cut(s)	357, 938
AcsI	RAATTY	2 cut(s)	467, 637
AcuI	CTGAAG	2 cut(s)	389, 540
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	2 cut(s)	704, 977
AfeI	AGCGCT	1 cut(s)	625
AfiI	CCNNNNNNNGG	2 cut(s)	778, 1030
AflIII	ACRYGT	1 cut(s)	931
AgsI	TTSAA	4 cut(s)	146, 621, 734, 749
AjiI	CACGTC	1 cut(s)	932
AloI	GAACNNNNNNTCC	2 cut(s)	590, 622
AluBI	AGCT	5 cut(s)	69, 252, 262, 268, 518
AluI	AGCT	5 cut(s)	69, 252, 262, 268, 518
Alw21I	GWGCWC	2 cut(s)	892, 984
Alw26I	GTCTC	3 cut(s)	325, 593, 922
AlwI	GGATC	1 cut(s)	360
Ama87I	CYCGRG	2 cut(s)	269, 442
Aor51HI	AGCGCT	1 cut(s)	625
AoxI	GGCC	5 cut(s)	186, 357, 421, 804, 938
ApeKI	GCWGC	2 cut(s)	626, 795
ApoI	RAATTY	2 cut(s)	467, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	300, 626
AspS9I	GGNCC	4 cut(s)	133, 483, 524, 805
AsuHPI	GGTGA	2 cut(s)	425, 955
AvaI	CYCGRG	2 cut(s)	269, 442
AvaII	GGWCC	3 cut(s)	133, 483, 524
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	2 cut(s)	892, 984
BbvI	GCAGC	2 cut(s)	613, 782
BccI	CCATC	3 cut(s)	398, 845, 910
BceAI	ACGGC	2 cut(s)	344, 803
BcoDI	GTCTC	3 cut(s)	325, 593, 922
BfaI	CTAG	1 cut(s)	1056
BfmI	CTRYAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	627
BglII	AGATCT	2 cut(s)	207, 276
BisI	GCNGC	3 cut(s)	202, 627, 796
BlsI	GCNGC	3 cut(s)	203, 628, 797
Bme18I	GGWCC	3 cut(s)	133, 483, 524
BmeT110I	CYCGRG	2 cut(s)	269, 442
BmgBI	CACGTC	1 cut(s)	932
BmgT120I	GGNCC	4 cut(s)	133, 483, 524, 805
BmiI	GGNNCC	2 cut(s)	526, 924
BmsI	GCATC	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	70
BplI	GAGNNNNNCTC	4 cut(s)	263, 295, 971, 1003
Bpu10I	CCTNAGC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	315, 443
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 818, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	778, 1030
Bse118I	RCCGGY	1 cut(s)	940
Bse3DI	GCAATG	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	315, 443
BseGI	GGATG	2 cut(s)	10, 921
BseLI	CCNNNNNNNGG	2 cut(s)	778, 1030
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	231, 294, 724
BseRI	GAGGAG	1 cut(s)	287
BseX3I	CGGCCG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	613, 782
BsgI	GTGCAG	1 cut(s)	457
Bsh1236I	CGCG	1 cut(s)	298
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	5 cut(s)	188, 359, 423, 806, 940
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	892, 984
BsiHKCI	CYCGRG	2 cut(s)	269, 442
BsiSI	CCGG	1 cut(s)	941
BslI	CCNNNNNNNGG	2 cut(s)	778, 1030
BsmAI	GTCTC	3 cut(s)	325, 593, 922
BsmBI	CGTCTC	2 cut(s)	593, 922
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	5 cut(s)	188, 359, 423, 806, 940
Bso31I	GGTCTC	1 cut(s)	325
BsoBI	CYCGRG	2 cut(s)	269, 442
Bsp1286I	GDGCHC	2 cut(s)	892, 984
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
BspACI	CCGC	3 cut(s)	131, 201, 863
BspANI	GGCC	5 cut(s)	188, 359, 423, 806, 940
BspCNI	CTCAG	3 cut(s)	230, 293, 723
BspFNI	CGCG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	526, 924
BspPI	GGATC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	940
BsrGI	TGTACA	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	940
BssECI	CCNNGG	2 cut(s)	315, 443
BssMI	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst4CI	ACNGT	6 cut(s)	379, 464, 604, 738, 997, 1025
Bst6I	CTCTTC	1 cut(s)	493
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstAUI	TGTACA	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	4 cut(s)	217, 248, 280, 710
BstF5I	GGATG	2 cut(s)	10, 921
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	2 cut(s)	300, 626
BstKTI	GATC	6 cut(s)	26, 210, 279, 368, 535, 661
BstMAI	GTCTC	3 cut(s)	325, 593, 922
BstMBI	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 304, 956, 965
BstSFI	CTRYAG	1 cut(s)	263
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	613, 782
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	2 cut(s)	207, 276
BstYI	RGATCY	2 cut(s)	207, 276
BstZI	CGGCCG	1 cut(s)	357
BsuRI	GGCC	5 cut(s)	188, 359, 423, 806, 940
BtrI	CACGTC	1 cut(s)	932
BtsCI	GGATG	2 cut(s)	10, 921
Cac8I	GCNNGC	1 cut(s)	690
CciI	TCATGA	1 cut(s)	535
CfoI	GCGC	2 cut(s)	300, 626
Cfr10I	RCCGGY	1 cut(s)	940
Cfr13I	GGNCC	4 cut(s)	133, 483, 524, 805
CseI	GACGC	1 cut(s)	948
Csp6I	GTAC	2 cut(s)	703, 976
CviAII	CATG	3 cut(s)	536, 566, 700
CviQI	GTAC	2 cut(s)	703, 976
DdeI	CTNAG	4 cut(s)	217, 248, 280, 710
DpnI	GATC	6 cut(s)	25, 209, 278, 367, 534, 660
DpnII	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
DraIII	CACNNNGTG	1 cut(s)	778
EaeI	YGGCCR	2 cut(s)	357, 938
EagI	CGGCCG	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
EclXI	CGGCCG	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	3 cut(s)	133, 483, 524
Eco47III	AGCGCT	1 cut(s)	625
Eco52I	CGGCCG	1 cut(s)	357
Eco57I	CTGAAG	2 cut(s)	389, 540
Eco88I	CYCGRG	2 cut(s)	269, 442
EcoO109I	RGGNCCY	1 cut(s)	524
Esp3I	CGTCTC	2 cut(s)	593, 922
FaeI	CATG	3 cut(s)	539, 569, 703
FatI	CATG	3 cut(s)	535, 565, 699
FauI	CCCGC	1 cut(s)	870
FauNDI	CATATG	1 cut(s)	906
Fnu4HI	GCNGC	3 cut(s)	202, 627, 796
FokI	GGATG	2 cut(s)	17, 928
Fsp4HI	GCNGC	3 cut(s)	202, 627, 796
FspBI	CTAG	1 cut(s)	1056
GlaI	GCGC	2 cut(s)	299, 625
GluI	GCNGC	3 cut(s)	202, 627, 796
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	5 cut(s)	188, 359, 423, 806, 940
HapII	CCGG	1 cut(s)	941
HgaI	GACGC	1 cut(s)	948
HhaI	GCGC	2 cut(s)	300, 626
Hin1II	CATG	3 cut(s)	539, 569, 703
Hin6I	GCGC	2 cut(s)	298, 624
HinP1I	GCGC	2 cut(s)	298, 624
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	4 cut(s)	48, 230, 679, 695
HpaII	CCGG	1 cut(s)	941
HphI	GGTGA	2 cut(s)	425, 955
Hpy166II	GTNNAC	3 cut(s)	375, 382, 705
Hpy188I	TCNGA	6 cut(s)	220, 283, 316, 454, 713, 927
Hpy188III	TCNNGA	4 cut(s)	89, 442, 536, 592
Hpy8I	GTNNAC	3 cut(s)	375, 382, 705
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	5 cut(s)	312, 515, 669, 778, 1013
HpyCH4III	ACNGT	6 cut(s)	379, 464, 604, 738, 997, 1025
HpyCH4IV	ACGT	2 cut(s)	371, 931
HpyCH4V	TGCA	7 cut(s)	8, 474, 495, 542, 629, 798, 1014
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 304, 956, 965
HpyF3I	CTNAG	4 cut(s)	217, 248, 280, 710
HpySE526I	ACGT	2 cut(s)	371, 931
Hsp92II	CATG	3 cut(s)	539, 569, 703
HspAI	GCGC	2 cut(s)	298, 624
Kzo9I	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
LmnI	GCTCC	2 cut(s)	887, 928
LpnPI	CCDG	8 cut(s)	27, 34, 122, 392, 577, 702, 954, 1048
Lsp1109I	GCAGC	2 cut(s)	613, 782
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	1056
MaeII	ACGT	2 cut(s)	371, 931
MaeIII	GTNAC	3 cut(s)	431, 458, 1051
MalI	GATC	6 cut(s)	25, 209, 278, 367, 534, 660
MboI	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
MboII	GAAGA	6 cut(s)	57, 70, 97, 168, 480, 560
MfeI	CAATTG	1 cut(s)	963
MflI	RGATCY	2 cut(s)	207, 276
MhlI	GDGCHC	2 cut(s)	892, 984
MluCI	AATT	3 cut(s)	467, 637, 963
MlyI	GAGTC	3 cut(s)	239, 688, 689
MmeI	TCCRAC	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	3 cut(s)	513, 762, 822
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	1 cut(s)	941
MunI	CAATTG	1 cut(s)	963
Mva1269I	GAATGC	1 cut(s)	587
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	4 cut(s)	220, 304, 956, 965
NdeI	CATATG	1 cut(s)	906
NdeII	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
NlaIII	CATG	3 cut(s)	539, 569, 703
NlaIV	GGNNCC	2 cut(s)	526, 924
NmuCI	GTSAC	3 cut(s)	431, 458, 1051
PaeR7I	CTCGAG	1 cut(s)	269
PagI	TCATGA	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	48
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	778
PkrI	GCNGC	3 cut(s)	203, 628, 797
PleI	GAGTC	3 cut(s)	238, 687, 689
PpsI	GAGTC	3 cut(s)	238, 687, 689
PpuMI	RGGWCCY	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	524
PspN4I	GGNNCC	2 cut(s)	526, 924
PspPI	GGNCC	4 cut(s)	133, 483, 524, 805
PspPPI	RGGWCCY	1 cut(s)	524
PspXI	VCTCGAGB	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	207, 276
PsyI	GACNNNGTC	1 cut(s)	95
RsaI	GTAC	2 cut(s)	704, 977
RsaNI	GTAC	2 cut(s)	703, 976
SaqAI	TTAA	3 cut(s)	513, 762, 822
SatI	GCNGC	3 cut(s)	202, 627, 796
Sau3AI	GATC	6 cut(s)	23, 207, 276, 365, 532, 658
Sau96I	GGNCC	4 cut(s)	133, 483, 524, 805
SchI	GAGTC	3 cut(s)	239, 688, 689
SduI	GDGCHC	2 cut(s)	892, 984
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	263
Sfr274I	CTCGAG	1 cut(s)	269
SinI	GGWCC	3 cut(s)	133, 483, 524
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	467, 637, 963
SsiI	CCGC	3 cut(s)	131, 201, 863
SspMI	CTAG	1 cut(s)	1056
TaaI	ACNGT	6 cut(s)	379, 464, 604, 738, 997, 1025
TaiI	ACGT	2 cut(s)	374, 934
TaqI	TCGA	7 cut(s)	90, 99, 233, 254, 270, 364, 396
TasI	AATT	3 cut(s)	467, 637, 963
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	513, 762, 822
Tru9I	TTAA	3 cut(s)	513, 762, 822
TseFI	GTSAC	3 cut(s)	431, 458, 1051
TseI	GCWGC	2 cut(s)	626, 795
Tsp45I	GTSAC	3 cut(s)	431, 458, 1051
TspDTI	ATGAA	4 cut(s)	40, 550, 554, 567
TspGWI	ACGGA	3 cut(s)	611, 730, 1006
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	778
VpaK11BI	GGWCC	3 cut(s)	133, 483, 524
XapI	RAATTY	2 cut(s)	467, 637
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.