MD06G1161100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0017207
Physical Location & Seq
Reverse (-)
30212672 .. 30214677
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1161100.v1.1.491

Sequence Viewer

Length: 195 bp
ATGGTGAAAGTGGCAACCTACTTCGCTATGACTTTGGGAGCTTTTGTGTTCTGGCAGTCCATGGATAAAGTCCACGTCTGGATCGCTCTGCATCAGGATGAAAAGCAAGAAAGACTCGAAAGGGAAATGGAGATTAAGAGAGTTAGAGAAGAGATGCTGCGGGAGCAGGCCAAATTAAGGGAGACTCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.8

Weight (kDa)

6.73

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67785
malus_domestica MD06G1161100.v1.1 MD14G1166500.v1.1
prunus_persica Prupe.5G160800_v2.0.a1
pyrus_communis pycom14g13910
rosa_chinensis RchiOBHm_Chr7g0191781
rosa_roxburghii Rroxscaffold_3G00263540
rosa_rugosa Rorug06G0511300
rosa_samantha Rh7AG121100 Rh7BG122800 Rh7CG125700 Rh7DG124400
rosa_wichuraiana Rw7G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 160
AclWI GGATC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 177
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 89
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 16
BbvI GCAGC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 176
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmgBI CACGTC 1 cut(s) 76
BmsI GCATC 2 cut(s) 100, 144
BpuEI CTTGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 170
Bsp143I GATC 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 170
BspPI GGATC 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 168
CviAII CATG 2 cut(s) 61, 192
CviJI RGCY 2 cut(s) 41, 170
CviKI_1 RGCY 2 cut(s) 41, 170
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 64, 195
FaiI YATR 3 cut(s) 29, 62, 193
FatI CATG 2 cut(s) 60, 191
FauI CCCGC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
HaeIII GGCC 1 cut(s) 170
Hin1II CATG 2 cut(s) 64, 195
HinfI GANTC 2 cut(s) 114, 184
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 79, 95
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 64, 195
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 38, 163
LpnPI CCDG 4 cut(s) 37, 64, 80, 152
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 2 cut(s) 100, 144
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 161
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 108, 178
MseI TTAA 2 cut(s) 135, 176
MslI CAYNNNNRTG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 163
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 64, 195
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 2 cut(s) 108, 178
PpsI GAGTC 2 cut(s) 108, 178
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 2 cut(s) 135, 176
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 81
SchI GAGTC 2 cut(s) 108, 178
SetI ASST 3 cut(s) 20, 43, 78
SfaNI GCATC 2 cut(s) 100, 144
SgeI CNNG 9 cut(s) 64, 73, 86, 91, 107, 119, 128, 173, 179
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 160
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 173
Tru1I TTAA 2 cut(s) 135, 176
Tru9I TTAA 2 cut(s) 135, 176
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.