pycom14g13910

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
16732117 .. 16733259
1143 bp
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UTR
Exon/CDS
Intron
pycom14g13910.1

Sequence Viewer

Length: 195 bp
ATGGTGAAGGTCGCGACCTACTTCGCTATGACTTTGGGAGCTTTCGTGTTCTGGCAGTCCATGGATAAAGTCCACGTCTGGATCGCCCTGCATCAGGACGAAAAGCAAGAAAGACTCGAAAGGGAAATGGAGATTAAGAGGGTTAGAGAAGAGCTGCTGCAGCAGCAAGCCAAACAAAGGGAGACTCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.76

Weight (kDa)

6.73

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67785
malus_domestica MD06G1161100.v1.1 MD14G1166500.v1.1
prunus_persica Prupe.5G160800_v2.0.a1
pyrus_communis pycom14g13910
rosa_chinensis RchiOBHm_Chr7g0191781
rosa_roxburghii Rroxscaffold_3G00263540
rosa_rugosa Rorug06G0511300
rosa_samantha Rh7AG121100 Rh7BG122800 Rh7CG125700 Rh7DG124400
rosa_wichuraiana Rw7G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AclWI GGATC 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 94, 177
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 2 cut(s) 41, 154
AluI AGCT 2 cut(s) 41, 154
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 4 cut(s) 154, 157, 160, 163
AsuHPI GGTGA 1 cut(s) 16
BbvI GCAGC 4 cut(s) 141, 144, 172, 175
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 4 cut(s) 155, 158, 161, 164
BlsI GCNGC 4 cut(s) 156, 159, 162, 165
BmgBI CACGTC 1 cut(s) 76
BmsI GCATC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 177
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 94, 177
BseXI GCAGC 4 cut(s) 141, 144, 172, 175
Bsh1236I CGCG 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 94, 177
BsmAI GTCTC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 60
Bsp68I TCGCGA 1 cut(s) 14
BspFNI CGCG 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 60
BstENI CCTNNNNNAGG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 160, 163
BstSFI CTRYAG 1 cut(s) 158
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 4 cut(s) 141, 144, 172, 175
BtgI CCRYGG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 76
BtuMI TCGCGA 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 168
CviAII CATG 2 cut(s) 61, 192
CviJI RGCY 3 cut(s) 41, 154, 170
CviKI_1 RGCY 3 cut(s) 41, 154, 170
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 64, 195
FaiI YATR 3 cut(s) 29, 62, 193
FatI CATG 2 cut(s) 60, 191
Fnu4HI GCNGC 4 cut(s) 155, 158, 161, 164
Fsp4HI GCNGC 4 cut(s) 155, 158, 161, 164
GluI GCNGC 4 cut(s) 155, 158, 161, 164
Hin1II CATG 2 cut(s) 64, 195
HinfI GANTC 2 cut(s) 114, 184
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 13, 79, 95
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 91, 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 163
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 64, 195
Kzo9I GATC 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 37, 64, 80, 101
Lsp1109I GCAGC 4 cut(s) 141, 144, 172, 175
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 161
MlyI GAGTC 2 cut(s) 108, 178
MnlI CCTC 1 cut(s) 132
MseI TTAA 1 cut(s) 135
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 160, 163
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 64, 195
NruI TCGCGA 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 156, 159, 162, 165
PleI GAGTC 2 cut(s) 108, 178
PpsI GAGTC 2 cut(s) 108, 178
PstI CTGCAG 1 cut(s) 162
RruI TCGCGA 1 cut(s) 14
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 4 cut(s) 155, 158, 161, 164
Sau3AI GATC 1 cut(s) 81
SchI GAGTC 2 cut(s) 108, 178
SetI ASST 5 cut(s) 12, 20, 43, 78, 156
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 117
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 4 cut(s) 154, 157, 160, 163
XagI CCTNNNNNAGG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.