Prupe.5G160800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
14164696 .. 14166158
1463 bp
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UTR
Exon/CDS
Intron
Prupe.5G160800.1

Sequence Viewer

Length: 192 bp
ATGGTGAAGGTAGCAACCTACTTTGCTATGACTTTGGGAGCTTTTGTGTTCTGGCAATCCATGGATAAAGTCCACGTCTGGATCGCTCTCCATCAGGACGAAAAGCAAGAAAGACTGGAAAGGGAATTGGAAATTAAGAGGGTTAGAGAAGAGCTGCTGCAGCAAGCCAAACAAAGGGAGACTCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.62

Weight (kDa)

6.73

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G67785
malus_domestica MD06G1161100.v1.1 MD14G1166500.v1.1
prunus_persica Prupe.5G160800_v2.0.a1
pyrus_communis pycom14g13910
rosa_chinensis RchiOBHm_Chr7g0191781
rosa_roxburghii Rroxscaffold_3G00263540
rosa_rugosa Rorug06G0511300
rosa_samantha Rh7AG121100 Rh7BG122800 Rh7CG125700 Rh7DG124400
rosa_wichuraiana Rw7G010320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 174
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 2 cut(s) 41, 154
AluI AGCT 2 cut(s) 41, 154
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 89
ApeKI GCWGC 3 cut(s) 154, 157, 160
AsuHPI GGTGA 1 cut(s) 16
BbvI GCAGC 3 cut(s) 141, 144, 172
BccI CCATC 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 3 cut(s) 155, 158, 161
BlsI GCNGC 3 cut(s) 156, 159, 162
BmgBI CACGTC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse1I ACTGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 120
BseXI GCAGC 3 cut(s) 141, 144, 172
BslI CCNNNNNNNGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 144
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 60
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 141, 144, 172
BtgI CCRYGG 1 cut(s) 60
BtrI CACGTC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 165
CviAII CATG 2 cut(s) 61, 189
CviJI RGCY 3 cut(s) 41, 154, 167
CviKI_1 RGCY 3 cut(s) 41, 154, 167
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 60
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 2 cut(s) 64, 192
FaiI YATR 3 cut(s) 29, 62, 190
FatI CATG 2 cut(s) 60, 188
Fnu4HI GCNGC 3 cut(s) 155, 158, 161
Fsp4HI GCNGC 3 cut(s) 155, 158, 161
GluI GCNGC 3 cut(s) 155, 158, 161
Hin1II CATG 2 cut(s) 64, 192
HinfI GANTC 1 cut(s) 181
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 79, 95
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 64, 192
Kzo9I GATC 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 37, 64, 80, 101
Lsp1109I GCAGC 3 cut(s) 141, 144, 172
MaeII ACGT 1 cut(s) 75
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 161
MluCI AATT 2 cut(s) 125, 132
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 1 cut(s) 132
MseI TTAA 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 160
NcoI CCATGG 1 cut(s) 60
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 64, 192
PciSI GCTCTTC 1 cut(s) 144
PkrI GCNGC 3 cut(s) 156, 159, 162
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 3 cut(s) 155, 158, 161
Sau3AI GATC 1 cut(s) 81
SchI GAGTC 1 cut(s) 175
SetI ASST 5 cut(s) 12, 20, 43, 78, 156
SfcI CTRYAG 1 cut(s) 158
SgeI CNNG 8 cut(s) 64, 73, 86, 91, 107, 119, 128, 176
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 125, 132
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 1 cut(s) 78
TasI AATT 2 cut(s) 125, 132
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 3 cut(s) 154, 157, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.