Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0020255

Physical Location & Seq

Genomic Coordinates Reverse (-)

33120508 .. 33121314

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1197000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAACATGTATTCTGCGACAGGTGATGCTGTGAATGCACGCCTGGTGTTTGATGAAATACCCTCCAAGAATGTAATGCAGATGCACAATGTGGAACCCGATCAAGTTACATTGACGGTGGCTCTCTCAGCGTGCGCTGATCTCGGAGCGTTAGAAATGGGAGAGTGGATTGACGCTTATGTCTGTCATAAGCATGGGTTTGATACAGATTTATGCTTGAACAATGCGCTTGTCAACATGTATGCGAAATGCGGGGACATTGGAACGGCGAGGAGATTGTTCGACAACATACGAGAGAAGGATGTTATGACATCGCTTACCCTTTTCGGAAGAATGAAAGAAGCAAGTAAAAACACCAGGAAGAACAAGAAGAATGGTGAGTTTGGAAGCGCCTTAGTTGTCCCTAACGATGTTACTTTCATAGGAGTTTTGATGGCTTGCAGCCACGCGAGGATGATGGAGGAAGGGAAGCGGCATTTCAGAAGCATGAGCCAAGAATACGGGTTGAAACCCCGCGAAGCTCATTTTGGGTGCATGGTGGATCTGTTCTGCCGAGCCGGGCTCTTACAGGAAGCTTATTACTTTGCTCTGAAGATGGCAGGGCCTTCAAATGCAGTGGTGTGGAGGACTTTGCTCGGCGCATGCAGCCTCCACGGAGACATTAAACTTGGCTCGCAAGTTAGAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

230

Amino Acids

25.39

Weight (kDa)

7.6

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74400
malus_domestica	MD06G1197000.v1.1 MD14G1203900.v1.1
prunus_persica	Prupe.5G197200_v2.0.a1
pyrus_communis	pycom06g17380 pycom14g16870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccII	CGCG	2 cut(s)	449, 516
AciI	CCGC	3 cut(s)	252, 472, 514
AclWI	GGATC	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	611
AdeI	CACNNNGTG	1 cut(s)	91
AflIII	ACRYGT	2 cut(s)	6, 237
AgsI	TTSAA	3 cut(s)	220, 508, 609
AjnI	CCWGG	2 cut(s)	42, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	2 cut(s)	521, 575
AluI	AGCT	2 cut(s)	521, 575
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	1 cut(s)	549
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	2 cut(s)	441, 645
AspLEI	GCGC	4 cut(s)	137, 229, 392, 641
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	35, 389
BanII	GRGCYC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	453, 657
BccI	CCATC	3 cut(s)	427, 451, 589
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	2 cut(s)	44, 358
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	1 cut(s)	688
BfoI	RGCGCY	1 cut(s)	393
BisI	GCNGC	3 cut(s)	442, 473, 646
BlsI	GCNGC	3 cut(s)	443, 474, 647
Bme1390I	CCNGG	3 cut(s)	44, 358, 559
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	3 cut(s)	44, 358, 559
BmsI	GCATC	2 cut(s)	16, 72
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	652
BseBI	CCWGG	2 cut(s)	44, 358
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	2 cut(s)	307, 459
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	453, 657
Bsh1236I	CGCG	2 cut(s)	449, 516
BshFI	GGCC	1 cut(s)	604
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	2 cut(s)	269, 386
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	269, 386
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	3 cut(s)	100, 139, 541
BspACI	CCGC	3 cut(s)	252, 472, 514
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	1 cut(s)	140
BspFNI	CGCG	2 cut(s)	449, 516
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	3 cut(s)	100, 139, 541
Bst2UI	CCWGG	2 cut(s)	44, 358
Bst4CI	ACNGT	1 cut(s)	118
BstC8I	GCNNGC	5 cut(s)	40, 133, 439, 643, 674
BstDEI	CTNAG	2 cut(s)	127, 394
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	2 cut(s)	307, 459
BstFNI	CGCG	2 cut(s)	449, 516
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	4 cut(s)	137, 229, 392, 641
BstKTI	GATC	3 cut(s)	103, 142, 544
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	3 cut(s)	100, 139, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 128, 645
BstNI	CCWGG	2 cut(s)	44, 358
BstNSI	RCATGY	3 cut(s)	10, 241, 645
BstSCI	CCNGG	3 cut(s)	42, 356, 557
BstUI	CGCG	2 cut(s)	449, 516
BstV1I	GCAGC	2 cut(s)	453, 657
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	604
BtgI	CCRYGG	1 cut(s)	652
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	307, 459
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	5 cut(s)	40, 133, 439, 643, 674
CfoI	GCGC	4 cut(s)	137, 229, 392, 641
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	597, 632
CviAII	CATG	6 cut(s)	7, 194, 238, 487, 535, 642
DdeI	CTNAG	2 cut(s)	127, 394
DpnI	GATC	3 cut(s)	102, 141, 543
DpnII	GATC	3 cut(s)	100, 139, 541
DraIII	CACNNNGTG	1 cut(s)	91
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	42, 356
EcoT38I	GRGCYC	1 cut(s)	564
FaeI	CATG	6 cut(s)	10, 197, 241, 490, 538, 645
FaqI	GGGAC	2 cut(s)	269, 386
FatI	CATG	6 cut(s)	6, 193, 237, 486, 534, 641
FauI	CCCGC	2 cut(s)	245, 521
Fnu4HI	GCNGC	3 cut(s)	442, 473, 646
FokI	GGATG	2 cut(s)	314, 466
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	442, 473, 646
FspBI	CTAG	1 cut(s)	688
GlaI	GCGC	4 cut(s)	136, 228, 391, 640
GluI	GCNGC	3 cut(s)	442, 473, 646
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	1 cut(s)	182
HhaI	GCGC	4 cut(s)	137, 229, 392, 641
Hin1II	CATG	6 cut(s)	10, 197, 241, 490, 538, 645
Hin6I	GCGC	4 cut(s)	135, 227, 390, 639
HinP1I	GCGC	4 cut(s)	135, 227, 390, 639
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	573
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	2 cut(s)	35, 389
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	4 cut(s)	146, 329, 482, 591
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	292, 458, 615
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	7 cut(s)	38, 79, 85, 441, 534, 614, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 128, 645
HpyF3I	CTNAG	2 cut(s)	127, 394
Hsp92II	CATG	6 cut(s)	10, 197, 241, 490, 538, 645
HspAI	GCGC	4 cut(s)	135, 227, 390, 639
Kzo9I	GATC	3 cut(s)	100, 139, 541
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	8 cut(s)	6, 29, 56, 343, 370, 554, 571, 585
Lsp1109I	GCAGC	2 cut(s)	453, 657
LweI	GCATC	2 cut(s)	16, 72
MaeI	CTAG	1 cut(s)	688
MaeIII	GTNAC	2 cut(s)	106, 412
MalI	GATC	3 cut(s)	102, 141, 543
MboI	GATC	3 cut(s)	100, 139, 541
MboII	GAAGA	4 cut(s)	342, 373, 382, 604
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	564
MnlI	CCTC	6 cut(s)	73, 264, 444, 454, 618, 659
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	3 cut(s)	44, 358, 559
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	2 cut(s)	44, 358
MvnI	CGCG	2 cut(s)	449, 516
MwoI	GCNNNNNNNGC	3 cut(s)	35, 128, 645
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	3 cut(s)	100, 139, 541
NlaIII	CATG	6 cut(s)	10, 197, 241, 490, 538, 645
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	2 cut(s)	578, 615
NspI	RCATGY	3 cut(s)	10, 241, 645
PaeI	GCATGC	1 cut(s)	645
PciI	ACATGT	2 cut(s)	6, 237
PctI	GAATGC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	443, 474, 647
PscI	ACATGT	2 cut(s)	6, 237
Psp6I	CCWGG	2 cut(s)	42, 356
PspGI	CCWGG	2 cut(s)	42, 356
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	3 cut(s)	442, 473, 646
Sau3AI	GATC	3 cut(s)	100, 139, 541
Sau96I	GGNCC	1 cut(s)	602
ScrFI	CCNGG	3 cut(s)	44, 358, 559
SduI	GDGCHC	1 cut(s)	564
SetI	ASST	3 cut(s)	25, 523, 577
SfaNI	GCATC	2 cut(s)	16, 72
SmiMI	CAYNNNNRTG	1 cut(s)	192
SphI	GCATGC	1 cut(s)	645
SsiI	CCGC	3 cut(s)	252, 472, 514
SspMI	CTAG	1 cut(s)	688
StyD4I	CCNGG	3 cut(s)	42, 356, 557
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	1 cut(s)	282
TauI	GCSGC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	1 cut(s)	621
TseI	GCWGC	2 cut(s)	441, 645
TspDTI	ATGAA	4 cut(s)	17, 69, 350, 409
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	1 cut(s)	621
XceI	RCATGY	3 cut(s)	10, 241, 645
XspI	CTAG	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.