Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0020255

Physical Location & Seq

Genomic Coordinates Reverse (-)

21380958 .. 21381440

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAAGAAGCAAGTAAAAACACCAGGAAGAACAAGAAGAATGGTGAGTTTGGAAGCGCTTTAGTTGTCCCTAACGATGTTACTTTCATAGGAGTTTTGATGGCTTGCAGCCACACAAGGATGATGGAGGAAGGGAAGCGGCATTTCAGAAGCATGAGCCAAGAATACGGTTTGAAACCCCGCGAAGCTCATTTTGGGTGCATGGTGGATCTGTTCTGCCGAGCCGGGCTCTTACAAGAAGCTTATGACTTTACCCTGAAGATGGCAGGGCCTTCAAATGCAGTGGTGTGGAGGACATTGTTTGGCGCGTGCAGCCTCCACGGAGACATTAAACTTGGCTCGCAAGTTAGGGTAAAGTTGCTTGAGTTAGAGCCTAGTTGTGTTGGCGATGATGTTGCTTTGTCCAACATCTATGCTGCCAAAGGCATGTGGGATAGGAAGATGATTGTTAGAGATCAAATGAAGCGCCGGGTTGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

161

Amino Acids

17.96

Weight (kDa)

9.42

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	107 - 156	8.3e-06	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74400
malus_domestica	MD06G1197000.v1.1 MD14G1203900.v1.1
prunus_persica	Prupe.5G197200_v2.0.a1
pyrus_communis	pycom06g17380 pycom14g16870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	183, 308
AciI	CCGC	2 cut(s)	139, 181
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	278
AfeI	AGCGCT	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	175, 276
AjnI	CCWGG	1 cut(s)	23
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	188, 242
AluI	AGCT	2 cut(s)	188, 242
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	216
Aor51HI	AGCGCT	1 cut(s)	58
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	3 cut(s)	108, 312, 416
AspLEI	GCGC	3 cut(s)	59, 308, 468
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	2 cut(s)	226, 470
AsuHPI	GGTGA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	120, 324, 403
BccI	CCATC	3 cut(s)	94, 118, 256
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	226, 470
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	1 cut(s)	375
BfoI	RGCGCY	2 cut(s)	60, 469
BisI	GCNGC	4 cut(s)	109, 140, 313, 417
BlsI	GCNGC	4 cut(s)	110, 141, 314, 418
Bme1390I	CCNGG	3 cut(s)	25, 226, 470
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	3 cut(s)	25, 226, 470
BplI	GAGNNNNNCTC	2 cut(s)	213, 245
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	2 cut(s)	226, 470
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	120, 324, 403
BsgI	GTGCAG	1 cut(s)	331
Bsh1236I	CGCG	2 cut(s)	183, 308
BshFI	GGCC	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	225, 469
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	208, 454
BspACI	CCGC	2 cut(s)	139, 181
BspANI	GGCC	1 cut(s)	271
BspFNI	CGCG	2 cut(s)	183, 308
BspPI	GGATC	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	208, 454
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	106, 310, 341
BstDSI	CCRYGG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	2 cut(s)	183, 308
BstH2I	RGCGCY	2 cut(s)	60, 469
BstHHI	GCGC	3 cut(s)	59, 308, 468
BstKTI	GATC	2 cut(s)	211, 457
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	2 cut(s)	208, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	23, 224, 468
BstUI	CGCG	2 cut(s)	183, 308
BstV1I	GCAGC	3 cut(s)	120, 324, 403
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	319
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	126
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	3 cut(s)	106, 310, 341
CfoI	GCGC	3 cut(s)	59, 308, 468
Cfr13I	GGNCC	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	3 cut(s)	154, 202, 427
DpnI	GATC	2 cut(s)	210, 456
DpnII	GATC	2 cut(s)	208, 454
Eco24I	GRGCYC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	3 cut(s)	157, 205, 430
FaiI	YATR	6 cut(s)	89, 155, 203, 246, 414, 428
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	153, 201, 426
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	4 cut(s)	109, 140, 313, 417
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	4 cut(s)	109, 140, 313, 417
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	3 cut(s)	58, 307, 467
GluI	GCNGC	4 cut(s)	109, 140, 313, 417
HaeII	RGCGCY	2 cut(s)	60, 469
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	2 cut(s)	225, 469
HhaI	GCGC	3 cut(s)	59, 308, 468
Hin1II	CATG	3 cut(s)	157, 205, 430
Hin6I	GCGC	3 cut(s)	57, 306, 466
HinP1I	GCGC	3 cut(s)	57, 306, 466
HindIII	AAGCTT	1 cut(s)	240
HpaII	CCGG	2 cut(s)	225, 469
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	125, 282
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	5 cut(s)	108, 201, 281, 312, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	157, 205, 430
HspAI	GCGC	3 cut(s)	57, 306, 466
Kzo9I	GATC	2 cut(s)	208, 454
LpnPI	CCDG	5 cut(s)	10, 37, 238, 252, 269
Lsp1109I	GCAGC	3 cut(s)	120, 324, 403
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	210, 456
MboI	GATC	2 cut(s)	208, 454
MboII	GAAGA	4 cut(s)	40, 49, 271, 451
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	3 cut(s)	121, 285, 326
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	2 cut(s)	225, 469
MspR9I	CCNGG	3 cut(s)	25, 226, 470
MvaI	CCWGG	1 cut(s)	25
MvnI	CGCG	2 cut(s)	183, 308
MwoI	GCNNNNNNNGC	1 cut(s)	312
NciI	CCSGG	2 cut(s)	226, 470
NdeII	GATC	2 cut(s)	208, 454
NlaIII	CATG	3 cut(s)	157, 205, 430
NmeAIII	GCCGAG	1 cut(s)	245
NspI	RCATGY	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	110, 141, 314, 418
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	4 cut(s)	109, 140, 313, 417
Sau3AI	GATC	2 cut(s)	208, 454
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	3 cut(s)	25, 226, 470
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	2 cut(s)	190, 244
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SsiI	CCGC	2 cut(s)	139, 181
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	3 cut(s)	23, 224, 468
TaaI	ACNGT	1 cut(s)	170
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	3 cut(s)	108, 312, 416
TspDTI	ATGAA	3 cut(s)	17, 76, 476
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	288
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.