Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0020255

Physical Location & Seq

Genomic Coordinates Reverse (-)

15953327 .. 15954643

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAGATTCCTGAAAAGGTTTCCTTTGGCAAAACTTTGTACCCCTTTTCATCTTCCTAAAACCCAACTTCACACACACCTCAAACCACCTAAAGCAAACCAGACCCTTAAGAGATACCTCAAATCCAATTGCACCATCAAAGCTTTCTTACTGTTTAGAGACATATTGAGAAAAAGCCCTTCCACAATTGATAGCTACACTCTCTTGTTTGTCCTTAAAGCTTGCTCCCAAAAGTCTCTCTCACTTGAGGGGAAACAACTGCATGCCCTTTTGCTTAAGTATGGCTTTCAATCCATAGTTTACCTCCAAACATCTCTTATGAATATGTACTCTGCTGCGGGTAATGTTGTAGATGCACACCTAGTGTTTGATGAAATACCCTGCAAAAACATAATTTGCTGGACCACCTTGGTTTCTGCTTATGTCGACGATCAACAGCCTAACAAAGCTCTTCAGCTGTTCAGGCAGATGCAGATGCACAGTGTGGAACCTGATCAAGTTACGTTGACAGTTGCTCTCTCTGCGTGCGCTGATCTCGGCGCATTGGAAATGGGAGAATGGATTAATGCTTATGTCCGTCGTAAATATGAGTTCGATACAGATTTAAGCTTGAGCAATGCTCTTGTTAACATGTATGCAAAATGTGGGGATATTGGAACTGCAAGGAGATTGTTCGATAGCCTGCAAGAAAAGGATGTTATGACTTGGACATCAATGATTGTGGGGCATGCGTTACATGGACAAGCAGAAGAAGCGCTTAAACTCTTTGGACAAATGAAAGAAGCGAGTAATAACACCACGAAGAACAAGAAGAACGGTAGCTATGGAAGCTCTTCCATTGTCCCAAATGACGTTACTTTCATAGGAGTTTTGATGGCCTGCAGCCACGCGGGGCTGGTAGAGGAAGGAAAGTGGCATTTCAAAAGCATGTGTCAAGAGTACGGTTTGAAGCCCAGAGAAGCTCACTTCGGCTGCATGGTGGATCTTCTCTGCCGAGCCGGGCTTCTGCAAGAAGCTTACGACTTTATTTCAAAGACAGAAGTGCCTTCAAATGCAGTGGTTTGGAGGACATTGCTGGGTGCATGCAGCCTCCATGGAGATGCTGAACTTGGGTCACAAGTGAGGCAGAAGCTGCTTGAGTTGGGGCCAAGTTATGTTGGCGATGATGTTGCTTTGTCCAACATCTATGCTGCCAAAGGCATGTGGGAGAAGAAGGTGATTGTTAGAGACCAAATAAAGCAAAGAAGATCTCCTGGTTGCAGTTCAATTGAGGTGGGAAGGAGCATTGCTGAAGCAAAGAAGATCTCAAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

439

Amino Acids

48.9

Weight (kDa)

8.95

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74400
malus_domestica	MD06G1197000.v1.1 MD14G1203900.v1.1
prunus_persica	Prupe.5G197200_v2.0.a1
pyrus_communis	pycom06g17380 pycom14g16870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	426
AccII	CGCG	1 cut(s)	890
AciI	CCGC	2 cut(s)	338, 890
AclWI	GGATC	1 cut(s)	990
AcuI	CTGAAG	2 cut(s)	437, 1311
AdeI	CACNNNGTG	2 cut(s)	364, 484
AfaI	GTAC	3 cut(s)	40, 329, 941
AfeI	AGCGCT	1 cut(s)	756
AflII	CTTAAG	2 cut(s)	107, 275
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	290, 922, 949, 1032, 1050, 1266
AjnI	CCWGG	1 cut(s)	1252
Alw26I	GTCTC	3 cut(s)	153, 240, 1221
AlwI	GGATC	1 cut(s)	990
AlwNI	CAGNNNCTG	1 cut(s)	1132
Aor51HI	AGCGCT	1 cut(s)	756
AoxI	GGCC	2 cut(s)	876, 1145
ApeKI	GCWGC	6 cut(s)	335, 882, 972, 1086, 1132, 1190
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	832
AspLEI	GCGC	3 cut(s)	530, 542, 757
AspS9I	GGNCC	2 cut(s)	402, 1145
AsuC2I	CCSGG	1 cut(s)	1000
AsuHPI	GGTGA	1 cut(s)	1228
AvaII	GGWCC	1 cut(s)	402
BbvI	GCAGC	6 cut(s)	322, 894, 959, 1098, 1119, 1177
BccI	CCATC	2 cut(s)	143, 868
BcgI	CGANNNNNNTGC	2 cut(s)	1151, 1185
BciT130I	CCWGG	1 cut(s)	1254
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	1000
BcoDI	GTCTC	3 cut(s)	153, 240, 1221
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	880
BfoI	RGCGCY	1 cut(s)	758
BfrI	CTTAAG	2 cut(s)	107, 275
BglII	AGATCT	2 cut(s)	1247, 1302
BisI	GCNGC	6 cut(s)	336, 883, 973, 1087, 1133, 1191
BlsI	GCNGC	6 cut(s)	337, 884, 974, 1088, 1134, 1192
Bme1390I	CCNGG	2 cut(s)	1000, 1254
Bme18I	GGWCC	1 cut(s)	402
BmgT120I	GGNCC	2 cut(s)	402, 1145
BmiI	GGNNCC	2 cut(s)	489, 1146
BmrFI	CCNGG	2 cut(s)	1000, 1254
BmsI	GCATC	4 cut(s)	343, 459, 465, 1090
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpuEI	CTTGAG	4 cut(s)	266, 631, 1157, 1291
BpuMI	CCSGG	1 cut(s)	1000
BsaI	GGTCTC	1 cut(s)	1221
BsaJI	CCNNGG	2 cut(s)	408, 1093
Bse3DI	GCAATG	3 cut(s)	622, 1070, 1284
BseBI	CCWGG	1 cut(s)	1254
BseDI	CCNNGG	2 cut(s)	408, 1093
BseGI	GGATG	1 cut(s)	700
BseMI	GCAATG	3 cut(s)	622, 1070, 1284
BseXI	GCAGC	6 cut(s)	322, 894, 959, 1098, 1119, 1177
BseYI	CCCAGC	1 cut(s)	1075
Bsh1236I	CGCG	1 cut(s)	890
BshFI	GGCC	2 cut(s)	878, 1147
BsiSI	CCGG	1 cut(s)	999
BslFI	GGGAC	1 cut(s)	827
BsmAI	GTCTC	3 cut(s)	153, 240, 1221
BsmFI	GGGAC	1 cut(s)	827
BsnI	GGCC	2 cut(s)	878, 1147
Bso31I	GGTCTC	1 cut(s)	1221
Bsp143I	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
Bsp19I	CCATGG	1 cut(s)	1093
BspACI	CCGC	2 cut(s)	338, 890
BspANI	GGCC	2 cut(s)	878, 1147
BspFNI	CGCG	1 cut(s)	890
BspLI	GGNNCC	2 cut(s)	489, 1146
BspMAI	CTGCAG	1 cut(s)	884
BspPI	GGATC	1 cut(s)	990
BspQI	GCTCTTC	2 cut(s)	456, 838
BspTI	CTTAAG	2 cut(s)	107, 275
BspTNI	GGTCTC	1 cut(s)	1221
BsrDI	GCAATG	3 cut(s)	622, 1070, 1284
BssECI	CCNNGG	2 cut(s)	408, 1093
BssMI	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
BssT1I	CCWWGG	2 cut(s)	408, 1093
Bst2UI	CCWGG	1 cut(s)	1254
Bst4CI	ACNGT	5 cut(s)	153, 482, 511, 818, 944
Bst6I	CTCTTC	2 cut(s)	456, 838
BstAFI	CTTAAG	2 cut(s)	107, 275
BstAPI	GCANNNNNTGC	1 cut(s)	1132
BstC8I	GCNNGC	7 cut(s)	223, 264, 526, 683, 729, 880, 1084
BstDSI	CCRYGG	1 cut(s)	1093
BstF5I	GGATG	1 cut(s)	700
BstFNI	CGCG	1 cut(s)	890
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	3 cut(s)	530, 542, 757
BstKTI	GATC	6 cut(s)	433, 496, 535, 985, 1250, 1305
BstMAI	GTCTC	3 cut(s)	153, 240, 1221
BstMBI	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
BstMWI	GCNNNNNNNGC	5 cut(s)	463, 521, 752, 828, 1132
BstNI	CCWGG	1 cut(s)	1254
BstNSI	RCATGY	6 cut(s)	266, 634, 731, 931, 1086, 1204
BstSCI	CCNGG	2 cut(s)	998, 1252
BstSFI	CTRYAG	1 cut(s)	880
BstUI	CGCG	1 cut(s)	890
BstV1I	GCAGC	6 cut(s)	322, 894, 959, 1098, 1119, 1177
BstX2I	RGATCY	3 cut(s)	982, 1247, 1302
BstYI	RGATCY	3 cut(s)	982, 1247, 1302
BsuRI	GGCC	2 cut(s)	878, 1147
BtgI	CCRYGG	1 cut(s)	1093
BtgZI	GCGATG	1 cut(s)	1176
BtsCI	GGATG	1 cut(s)	700
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	2 cut(s)	487, 1062
Cac8I	GCNNGC	7 cut(s)	223, 264, 526, 683, 729, 880, 1084
CaiI	CAGNNNCTG	1 cut(s)	1132
CfoI	GCGC	3 cut(s)	530, 542, 757
Cfr13I	GGNCC	2 cut(s)	402, 1145
Csp6I	GTAC	3 cut(s)	39, 328, 940
CspCI	CAANNNNNGTGG	6 cut(s)	702, 737, 1038, 1073, 1254, 1289
CviAII	CATG	9 cut(s)	263, 631, 728, 737, 928, 976, 1083, 1094, 1201
CviQI	GTAC	3 cut(s)	39, 328, 940
DpnI	GATC	6 cut(s)	432, 495, 534, 984, 1249, 1304
DpnII	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
DraIII	CACNNNGTG	2 cut(s)	364, 484
Eam1104I	CTCTTC	2 cut(s)	456, 838
EarI	CTCTTC	2 cut(s)	456, 838
Eco130I	CCWWGG	2 cut(s)	408, 1093
Eco31I	GGTCTC	1 cut(s)	1221
Eco47I	GGWCC	1 cut(s)	402
Eco47III	AGCGCT	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	437, 1311
EcoRII	CCWGG	1 cut(s)	1252
EcoT14I	CCWWGG	2 cut(s)	408, 1093
ErhI	CCWWGG	2 cut(s)	408, 1093
FaeI	CATG	9 cut(s)	266, 634, 731, 740, 931, 979, 1086, 1097, 1204
FalI	AAGNNNNNCTT	6 cut(s)	7, 39, 269, 301, 741, 773
FaqI	GGGAC	1 cut(s)	827
FatI	CATG	9 cut(s)	262, 630, 727, 736, 927, 975, 1082, 1093, 1200
FauI	CCCGC	2 cut(s)	331, 883
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	6 cut(s)	336, 883, 973, 1087, 1133, 1191
FokI	GGATG	1 cut(s)	707
Fsp4HI	GCNGC	6 cut(s)	336, 883, 973, 1087, 1133, 1191
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	3 cut(s)	529, 541, 756
GluI	GCNGC	6 cut(s)	336, 883, 973, 1087, 1133, 1191
GsaI	CCCAGC	1 cut(s)	1079
HaeII	RGCGCY	1 cut(s)	758
HaeIII	GGCC	2 cut(s)	878, 1147
HapII	CCGG	1 cut(s)	999
HhaI	GCGC	3 cut(s)	530, 542, 757
Hin1II	CATG	9 cut(s)	266, 634, 731, 740, 931, 979, 1086, 1097, 1204
Hin6I	GCGC	3 cut(s)	528, 540, 755
HinP1I	GCGC	3 cut(s)	528, 540, 755
HincII	GTYRAC	3 cut(s)	427, 507, 628
HindII	GTYRAC	3 cut(s)	427, 507, 628
HindIII	AAGCTT	4 cut(s)	141, 219, 607, 1014
HinfI	GANTC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	1 cut(s)	1228
Hpy166II	GTNNAC	4 cut(s)	301, 427, 507, 628
Hpy188III	TCNNGA	2 cut(s)	10, 935
Hpy8I	GTNNAC	4 cut(s)	301, 427, 507, 628
Hpy99I	CGWCG	2 cut(s)	431, 582
HpyAV	CCTTC	5 cut(s)	189, 899, 1056, 1207, 1272
HpyCH4III	ACNGT	5 cut(s)	153, 482, 511, 818, 944
HpyCH4IV	ACGT	2 cut(s)	503, 852
HpyF10VI	GCNNNNNNNGC	5 cut(s)	463, 521, 752, 828, 1132
HpySE526I	ACGT	2 cut(s)	503, 852
Hsp92II	CATG	9 cut(s)	266, 634, 731, 740, 931, 979, 1086, 1097, 1204
HspAI	GCGC	3 cut(s)	528, 540, 755
Ksp22I	TGATCA	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
LguI	GCTCTTC	2 cut(s)	456, 838
LmnI	GCTCC	2 cut(s)	230, 1281
Lsp1109I	GCAGC	6 cut(s)	322, 894, 959, 1098, 1119, 1177
LweI	GCATC	4 cut(s)	343, 459, 465, 1090
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	503, 852
MaeIII	GTNAC	4 cut(s)	499, 732, 853, 1113
MalI	GATC	6 cut(s)	432, 495, 534, 984, 1249, 1304
MboI	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
MfeI	CAATTG	3 cut(s)	127, 186, 1266
MflI	RGATCY	3 cut(s)	982, 1247, 1302
MluCI	AATT	4 cut(s)	127, 186, 393, 1266
MmeI	TCCRAC	1 cut(s)	1203
MnlI	CCTC	9 cut(s)	89, 128, 241, 314, 895, 1059, 1100, 1116, 1264
MroXI	GAANNNNTTC	1 cut(s)	832
MseI	TTAA	7 cut(s)	108, 216, 276, 564, 605, 627, 759
MslI	CAYNNNNRTG	1 cut(s)	1098
MspA1I	CMGCKG	1 cut(s)	457
MspCI	CTTAAG	2 cut(s)	107, 275
MspI	CCGG	1 cut(s)	999
MspR9I	CCNGG	2 cut(s)	1000, 1254
MunI	CAATTG	3 cut(s)	127, 186, 1266
MvaI	CCWGG	1 cut(s)	1254
MvnI	CGCG	1 cut(s)	890
MwoI	GCNNNNNNNGC	5 cut(s)	463, 521, 752, 828, 1132
NciI	CCSGG	1 cut(s)	1000
NcoI	CCATGG	1 cut(s)	1093
NdeII	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
NlaIII	CATG	9 cut(s)	266, 634, 731, 740, 931, 979, 1086, 1097, 1204
NlaIV	GGNNCC	2 cut(s)	489, 1146
NmeAIII	GCCGAG	2 cut(s)	516, 1019
NmuCI	GTSAC	1 cut(s)	1113
NspI	RCATGY	6 cut(s)	266, 634, 731, 931, 1086, 1204
PaeI	GCATGC	3 cut(s)	266, 731, 1086
PciI	ACATGT	1 cut(s)	630
PciSI	GCTCTTC	2 cut(s)	456, 838
PdmI	GAANNNNTTC	1 cut(s)	832
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	6 cut(s)	337, 884, 974, 1088, 1134, 1192
PscI	ACATGT	1 cut(s)	630
PshBI	ATTAAT	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	1252
PspFI	CCCAGC	1 cut(s)	1075
PspGI	CCWGG	1 cut(s)	1252
PspN4I	GGNNCC	2 cut(s)	489, 1146
PspPI	GGNCC	2 cut(s)	402, 1145
PstI	CTGCAG	1 cut(s)	884
PstNI	CAGNNNCTG	1 cut(s)	1132
PsuI	RGATCY	3 cut(s)	982, 1247, 1302
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	3 cut(s)	40, 329, 941
RsaNI	GTAC	3 cut(s)	39, 328, 940
RseI	CAYNNNNRTG	1 cut(s)	1098
SalI	GTCGAC	1 cut(s)	425
SapI	GCTCTTC	2 cut(s)	456, 838
SaqAI	TTAA	7 cut(s)	108, 216, 276, 564, 605, 627, 759
SatI	GCNGC	6 cut(s)	336, 883, 973, 1087, 1133, 1191
Sau3AI	GATC	6 cut(s)	430, 493, 532, 982, 1247, 1302
Sau96I	GGNCC	2 cut(s)	402, 1145
ScrFI	CCNGG	2 cut(s)	1000, 1254
SfaNI	GCATC	4 cut(s)	343, 459, 465, 1090
SfcI	CTRYAG	1 cut(s)	880
SinI	GGWCC	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	1098
SmlI	CTYRAG	6 cut(s)	107, 245, 275, 610, 1136, 1306
SmoI	CTYRAG	6 cut(s)	107, 245, 275, 610, 1136, 1306
SphI	GCATGC	3 cut(s)	266, 731, 1086
Sse9I	AATT	4 cut(s)	127, 186, 393, 1266
SsiI	CCGC	2 cut(s)	338, 890
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	998, 1252
StyI	CCWWGG	2 cut(s)	408, 1093
TaaI	ACNGT	5 cut(s)	153, 482, 511, 818, 944
TaiI	ACGT	2 cut(s)	506, 855
TaqI	TCGA	3 cut(s)	426, 594, 675
TasI	AATT	4 cut(s)	127, 186, 393, 1266
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	7 cut(s)	108, 216, 276, 564, 605, 627, 759
Tru9I	TTAA	7 cut(s)	108, 216, 276, 564, 605, 627, 759
TscAI	CASTG	2 cut(s)	487, 1062
TseFI	GTSAC	1 cut(s)	1113
TseI	GCWGC	6 cut(s)	335, 882, 972, 1086, 1132, 1190
Tsp45I	GTSAC	1 cut(s)	1113
TspDTI	ATGAA	5 cut(s)	38, 335, 387, 791, 850
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	487, 1062
Vha464I	CTTAAG	2 cut(s)	107, 275
VpaK11BI	GGWCC	1 cut(s)	402
VspI	ATTAAT	1 cut(s)	564
XceI	RCATGY	6 cut(s)	266, 634, 731, 931, 1086, 1204
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	832
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.