Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012339

Physical Location & Seq

Genomic Coordinates Reverse (-)

34412324 .. 34417363

Gene Structure 5040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1280100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGGCTGCTTCGGAAGAGACTAGTGCTTTGTTCCCAATTTTCATTCTAACCATAATGGCACTGCCTCTAGTGCCTTATACAATTACGAAGTTGTGTCGTGCTGCATCCAAGAAAACAAAGAGCATCCACTGTCAGTGTTCAGAGTGCTTTCGATCAGGAAAGTACCGCAAGTCAATTTTAAAGCGGATTTCAAACTTATCGACGTGGAGTAACTTGACACTAATACTGCTCTGGGTTATCATGATCGTCCTGGTTTATTACATCAAAAATATGAGCCGCGAGATTCAAGTTTTTGAGCCATTCAGTATTCTTGGACTGGAACCTGGAGCTTCTGATTCAGAGATAAAGAAGGCATATAGGAGACTCTCTATACTATACCATCCAGATAAAAATCCAGATCCAGAGGCCCACAATTACTTTGTGGAGTTCATATCAAAGGCTTATCAGGCTCTGACGGATCCAGTATCTCGTGAGAATTTTGAAAAATATGGCCATCCAGATGGCAGGCAGGGATTTCAAATGGGCATAGCTCTTCCTCAATTCCTGCTGGACATCGATGGGGCATCTGGTGGAATACTCCTACTCTGGATAGTTGGTATTTGTATTCTATTGCCATTGGTGATAGCTGTTGTATATCTTTCAAGATCGGCAAAATATACAGGCAACTATGTCATGCATCACACGTTGTCCGCTTACTATTACTTAATGAAGCCTTCTCTGGCTCCCAGCAAAGTAATGGATGTCTTCATAAGGGCTGCTGAATATATGGAAATTCCAGTTCGTAGAACTGACGATGAACCCCTTCAGAAGCTTTTTATGCTAGTCAGGAGTGAGTTGAATCTGGACCTTAAAAATATCAAGCAAGAGCAGGCAAAGTTTTGGAAACAGCATCCAGCCCTTGTAAAGACAGAATTGCTGATTCAAGCACAGTTAACTCGTGAGTCAGCATCCTTATCTCCATCTCTGCAAGGTGATTTTAGACGTGTCCTGGAACTTGCCCCTCGCCTCCTTGAAGAATTGATGAAGATGGCAGTTACGCCACGCAATGCTCAGGGGCAGGGATGGCTGAGGCCTGCTATTGGTGTGGTTGAACTTTCTCAGTGTATAATTCAGGCTGTTCCTCTTAGTGCAAGGAAGGCTATTGGAGGGTCCAGTGAAGGCATTGCCCCCTTTCTGCAGCTGCCACATTTTAGTGAGGCGGTTATTAAAAAGATAGCCCGCAAGAAGCTGAGAGTGTTGCAGGATCTTCAGGACATGTCTGTGGAAGATCGTGCTGAGCGACTTTCTCAAATAGCTGGATTCTCATCCGCCGAAGTCCAGGATGTTGAAATGGTATTGCAGACAATGCCTTCGATATCAATTGAAGTTGAATGTAAGACTGAAGGCGAAGATGAGATACAAGAGGGTGACGTTGTCACCATTAATGCTTGGGTGACACTGAAGCGTGCCAACGGCCTAATTGGTGCCCTTCCCCATGCGCCTTACTTCCCATTCCACAAGGAAGAAAATTTCTGGTTTTTGCTTGCAGACAGCGTCTCCAACAACGTTTGGTTTTGGCGGAAGGTAAATTTCATGGATGAAGCTGCAGCCATTACTGCTGCTTCCAAGGAAATCGAGGACGCAATGGAGGGTTCAGAAGCAACTATGAAAGAGCCTAGTGCTGCTACCAAAGAAGCAGTTGAGAAGGTGAAGAGGGATATCAAAGAAGCAGTTGAGAAGGTGAAGAGCGGGTCTAGACGGATAACTGGCAAGTTACCAGCCCCAGCCCCAGCGGAGGGGAATTACAATTTGACATGCTACTGCCTGTGCGACTCTTGGATTGGCTGTGATAGAAAGACAAACTTGAAGATGAAGATTTTGAAGCGTACTCGGGCTGGTACCCGGGGAGGTTATGTGGCGGAAGAGGGACCGATTACGGAAGATGGTATGGAAGAGGAGGAGGAGAACGAAGATGAGGATTATGACGACGATTATGAGAGCGAGTACAGTGAAGATGAGGCGGATGAACAACACGACACGAAAAAGAAAGGCCCTGCTACGAACGGCACTGTGGATAAGCAAGGCTCGGGATCAGAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001655 GO:0001889 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0007568 GO:0008104 GO:0008150 GO:0008152 GO:0010259 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0048513 GO:0048731 GO:0048732 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061008 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071944 GO:0072001 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 map03060 map04141

Pfam Domains

Protein Families

DnaJ Sec63

Protein Analysis

694

Amino Acids

77.81

Weight (kDa)

5.53

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	100 - 160	2.8e-19	DnaJ domain
Sec63	PF02889	222 - 529	2.1e-20	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79940 AT1G79940 AT1G79940 AT1G79940
fragaria_vesca	FvH4_7g30440 FvH4_7g30440
malus_domestica	MD01G1210000.v1.1 MD07G1280100.v1.1
prunus_persica	Prupe.2G302300_v2.0.a1
pyrus_communis	pycom01g22050
rosa_chinensis	RchiOBHm_Chr1g0378591
rosa_laevigata	RLG00000026420
rosa_multiflora	Rmu_sc0002395.1_g000009
rosa_roxburghii	Rroxscaffold_4G00280370
rosa_rugosa	Rorug01G0409800
rosa_samantha	Rh1AG431300 Rh1BG389600 Rh1DG420800
rosa_wichuraiana	Rw1G037780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1877
AccB1I	GGYRCC	2 cut(s)	1463, 1877
AccBSI	CCGCTC	1 cut(s)	1728
AccII	CGCG	1 cut(s)	279
AclI	AACGTT	1 cut(s)	1545
AclWI	GGATC	5 cut(s)	392, 452, 465, 1251, 2077
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	4 cut(s)	475, 771, 1507, 1567
AcuI	CTGAAG	4 cut(s)	788, 1232, 1401, 1460
AfaI	GTAC	4 cut(s)	164, 1867, 1879, 1985
AfiI	CCNNNNNNNGG	3 cut(s)	1079, 1774, 1775
AflIII	ACRYGT	3 cut(s)	681, 982, 1254
AhlI	ACTAGT	1 cut(s)	20
AjiI	CACGTC	2 cut(s)	204, 983
AjnI	CCWGG	4 cut(s)	249, 322, 987, 1317
AluBI	AGCT	8 cut(s)	329, 530, 626, 811, 1180, 1228, 1295, 1583
AluI	AGCT	8 cut(s)	329, 530, 626, 811, 1180, 1228, 1295, 1583
Alw26I	GTCTC	3 cut(s)	11, 355, 1540
AlwI	GGATC	5 cut(s)	392, 452, 465, 1251, 2077
AlwNI	CAGNNNCTG	1 cut(s)	451
Ama87I	CYCGRG	3 cut(s)	1869, 1881, 2065
AoxI	GGCC	5 cut(s)	405, 490, 1070, 1453, 2029
ApeKI	GCWGC	9 cut(s)	5, 101, 755, 1177, 1180, 1583, 1586, 1598, 1661
ApoI	RAATTY	4 cut(s)	475, 771, 1507, 1567
ArsI	GACNNNNNNTTYG	4 cut(s)	10, 42, 1333, 1365
AseI	ATTAAT	1 cut(s)	1422
Asp700I	GAANNNNTTC	1 cut(s)	801
Asp718I	GGTACC	1 cut(s)	1877
AspLEI	GCGC	1 cut(s)	1480
AspS9I	GGNCC	5 cut(s)	406, 844, 1149, 1907, 2030
AsuC2I	CCSGG	2 cut(s)	1882, 1883
AsuHPI	GGTGA	7 cut(s)	631, 983, 1408, 1418, 1444, 1699, 1732
AvaI	CYCGRG	3 cut(s)	1869, 1881, 2065
AvaII	GGWCC	3 cut(s)	844, 1149, 1907
BaeGI	GKGCMC	1 cut(s)	1468
BalI	TGGCCA	1 cut(s)	492
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	2 cut(s)	1463, 1877
BarI	GAAGNNNNNNTAC	2 cut(s)	1380, 1412
BauI	CACGAG	2 cut(s)	468, 936
BbsI	GAAGAC	1 cut(s)	736
BbvCI	CCTCAGC	1 cut(s)	1067
BbvI	GCAGC	8 cut(s)	88, 742, 1167, 1189, 1570, 1585, 1598, 1648
BccI	CCATC	8 cut(s)	387, 494, 501, 551, 967, 1021, 1056, 1916
BceAI	ACGGC	2 cut(s)	1468, 2059
BciT130I	CCWGG	4 cut(s)	251, 324, 989, 1319
BcnI	CCSGG	2 cut(s)	1882, 1883
BcoDI	GTCTC	3 cut(s)	11, 355, 1540
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	5 cut(s)	21, 68, 821, 1656, 1734
BfmI	CTRYAG	2 cut(s)	1175, 1584
BlpI	GCTNAGC	1 cut(s)	1275
Bme1390I	CCNGG	6 cut(s)	251, 324, 989, 1319, 1882, 1883
Bme18I	GGWCC	3 cut(s)	844, 1149, 1907
BmeT110I	CYCGRG	3 cut(s)	1869, 1881, 2065
BmgBI	CACGTC	2 cut(s)	204, 983
BmgT120I	GGNCC	5 cut(s)	406, 844, 1149, 1907, 2030
BmiI	GGNNCC	7 cut(s)	321, 459, 723, 1150, 1465, 1879, 1908
BmrFI	CCNGG	6 cut(s)	251, 324, 989, 1319, 1882, 1883
BmsI	GCATC	6 cut(s)	113, 132, 572, 685, 898, 956
BpiI	GAAGAC	1 cut(s)	736
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	2 cut(s)	1050, 1067
Bpu1102I	GCTNAGC	1 cut(s)	1275
BpuMI	CCSGG	2 cut(s)	1882, 1883
Bsa29I	ATCGAT	1 cut(s)	555
BsaBI	GATNNNNATC	2 cut(s)	390, 1303
BsaJI	CCNNGG	3 cut(s)	1605, 1881, 1882
BsaXI	ACNNNNNCTCC	4 cut(s)	1520, 1550, 1878, 1908
Bsc4I	CCNNNNNNNGG	3 cut(s)	1079, 1774, 1775
Bse1I	ACTGG	5 cut(s)	321, 461, 776, 1152, 1750
Bse3DI	GCAATG	3 cut(s)	1051, 1161, 1629
Bse8I	GATNNNNATC	2 cut(s)	390, 1303
BseBI	CCWGG	4 cut(s)	251, 324, 989, 1319
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	1605, 1881, 1882
BseJI	GATNNNNATC	2 cut(s)	390, 1303
BseLI	CCNNNNNNNGG	3 cut(s)	1079, 1774, 1775
BseMI	GCAATG	3 cut(s)	1051, 1161, 1629
BseMII	CTCAG	5 cut(s)	1058, 1064, 1112, 1220, 1266
BseNI	ACTGG	5 cut(s)	321, 461, 776, 1152, 1750
BseRI	GAGGAG	3 cut(s)	1949, 1952, 1955
BseSI	GKGCMC	1 cut(s)	1468
BseXI	GCAGC	8 cut(s)	88, 742, 1167, 1189, 1570, 1585, 1598, 1648
BseYI	CCCAGC	3 cut(s)	725, 1762, 1768
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	5 cut(s)	407, 492, 1072, 1455, 2031
BshNI	GGYRCC	2 cut(s)	1463, 1877
BshVI	ATCGAT	1 cut(s)	555
BsiHKCI	CYCGRG	3 cut(s)	1869, 1881, 2065
BsiSI	CCGG	1 cut(s)	1882
BslFI	GGGAC	1 cut(s)	1920
BslI	CCNNNNNNNGG	3 cut(s)	1079, 1774, 1775
BsmAI	GTCTC	3 cut(s)	11, 355, 1540
BsmBI	CGTCTC	1 cut(s)	1540
BsmFI	GGGAC	1 cut(s)	1920
BsnI	GGCC	5 cut(s)	407, 492, 1072, 1455, 2031
BsoBI	CYCGRG	3 cut(s)	1869, 1881, 2065
Bsp1286I	GDGCHC	1 cut(s)	1468
Bsp143I	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
Bsp1720I	GCTNAGC	1 cut(s)	1275
BspANI	GGCC	5 cut(s)	407, 492, 1072, 1455, 2031
BspCNI	CTCAG	5 cut(s)	1059, 1063, 1111, 1221, 1267
BspDI	ATCGAT	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	279
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	7 cut(s)	321, 459, 723, 1150, 1465, 1879, 1908
BspMAI	CTGCAG	2 cut(s)	1179, 1588
BspPI	GGATC	5 cut(s)	392, 452, 465, 1251, 2077
BspQI	GCTCTTC	2 cut(s)	537, 1718
BspT107I	GGYRCC	2 cut(s)	1463, 1877
BsrBI	CCGCTC	1 cut(s)	1728
BsrDI	GCAATG	3 cut(s)	1051, 1161, 1629
BsrI	ACTGG	5 cut(s)	321, 461, 776, 1152, 1750
BssECI	CCNNGG	3 cut(s)	1605, 1881, 1882
BssMI	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
BssSI	CACGAG	2 cut(s)	468, 936
BssT1I	CCWWGG	1 cut(s)	1605
Bst2BI	CACGAG	2 cut(s)	468, 936
Bst2UI	CCWGG	4 cut(s)	251, 324, 989, 1319
Bst4CI	ACNGT	4 cut(s)	131, 930, 1988, 2050
Bst6I	CTCTTC	6 cut(s)	9, 537, 1685, 1718, 1896, 1926
BstAPI	GCANNNNNTGC	1 cut(s)	1345
BstC8I	GCNNGC	6 cut(s)	506, 870, 1074, 1219, 1446, 1524
BstDEI	CTNAG	6 cut(s)	1050, 1067, 1098, 1124, 1229, 1275
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	1480
BstKTI	GATC	8 cut(s)	155, 246, 400, 460, 647, 1246, 1270, 2072
BstMAI	GTCTC	3 cut(s)	11, 355, 1540
BstMBI	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 446, 817, 1063, 1136, 1345, 1595
BstNI	CCWGG	4 cut(s)	251, 324, 989, 1319
BstNSI	RCATGY	2 cut(s)	1258, 1797
BstSCI	CCNGG	6 cut(s)	249, 322, 987, 1317, 1880, 1881
BstSFI	CTRYAG	2 cut(s)	1175, 1584
BstSLI	GKGCMC	1 cut(s)	1468
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	8 cut(s)	88, 742, 1167, 1189, 1570, 1585, 1598, 1648
BstV2I	GAAGAC	1 cut(s)	736
BstX2I	RGATCY	3 cut(s)	397, 457, 1243
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	3 cut(s)	397, 457, 1243
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	5 cut(s)	407, 492, 1072, 1455, 2031
BsuTUI	ATCGAT	1 cut(s)	555
BtrI	CACGTC	2 cut(s)	204, 983
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	8 cut(s)	59, 127, 140, 1106, 1159, 1436, 1993, 2046
Cac8I	GCNNGC	6 cut(s)	506, 870, 1074, 1219, 1446, 1524
CaiI	CAGNNNCTG	1 cut(s)	451
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	1480
Cfr13I	GGNCC	5 cut(s)	406, 844, 1149, 1907, 2030
Cfr9I	CCCGGG	1 cut(s)	1881
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	2 cut(s)	1522, 1628
Csp6I	GTAC	4 cut(s)	163, 1866, 1878, 1984
CviAII	CATG	6 cut(s)	241, 673, 1255, 1475, 1573, 1794
CviQI	GTAC	4 cut(s)	163, 1866, 1878, 1984
DdeI	CTNAG	6 cut(s)	1050, 1067, 1098, 1124, 1229, 1275
DpnI	GATC	8 cut(s)	154, 245, 399, 459, 646, 1245, 1269, 2071
DpnII	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
DraI	TTTAAA	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	6 cut(s)	9, 537, 1685, 1718, 1896, 1926
EarI	CTCTTC	6 cut(s)	9, 537, 1685, 1718, 1896, 1926
EciI	GGCGGA	4 cut(s)	1297, 1573, 1913, 2015
Eco130I	CCWWGG	1 cut(s)	1605
Eco147I	AGGCCT	1 cut(s)	1072
Eco32I	GATATC	2 cut(s)	1356, 1699
Eco47I	GGWCC	3 cut(s)	844, 1149, 1907
Eco57I	CTGAAG	4 cut(s)	788, 1232, 1401, 1460
Eco88I	CYCGRG	3 cut(s)	1869, 1881, 2065
EcoO109I	RGGNCCY	1 cut(s)	2030
EcoRII	CCWGG	4 cut(s)	249, 322, 987, 1317
EcoRV	GATATC	2 cut(s)	1356, 1699
EcoT14I	CCWWGG	1 cut(s)	1605
EcoT22I	ATGCAT	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	1605
Esp3I	CGTCTC	1 cut(s)	1540
FaeI	CATG	6 cut(s)	244, 676, 1258, 1478, 1576, 1797
FalI	AAGNNNNNCTT	2 cut(s)	1826, 1858
FaqI	GGGAC	1 cut(s)	1920
FatI	CATG	6 cut(s)	240, 672, 1254, 1474, 1572, 1793
FauI	CCCGC	2 cut(s)	1226, 1721
FspBI	CTAG	5 cut(s)	21, 68, 821, 1656, 1734
GlaI	GCGC	1 cut(s)	1479
GsaI	CCCAGC	3 cut(s)	729, 1766, 1772
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	5 cut(s)	407, 492, 1072, 1455, 2031
HapII	CCGG	1 cut(s)	1882
HgaI	GACGC	2 cut(s)	1522, 1628
HhaI	GCGC	1 cut(s)	1480
Hin1II	CATG	6 cut(s)	244, 676, 1258, 1478, 1576, 1797
Hin6I	GCGC	1 cut(s)	1478
HinP1I	GCGC	1 cut(s)	1478
HincII	GTYRAC	1 cut(s)	933
HindII	GTYRAC	1 cut(s)	933
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	8 cut(s)	283, 335, 363, 838, 919, 941, 1299, 1811
HpaI	GTTAAC	1 cut(s)	933
HpaII	CCGG	1 cut(s)	1882
HphI	GGTGA	7 cut(s)	631, 983, 1408, 1418, 1444, 1699, 1732
Hpy166II	GTNNAC	1 cut(s)	933
Hpy188I	TCNGA	8 cut(s)	13, 142, 334, 340, 453, 807, 1636, 2074
Hpy8I	GTNNAC	1 cut(s)	933
Hpy99I	CGWCG	2 cut(s)	205, 1970
HpyCH4III	ACNGT	4 cut(s)	131, 930, 1988, 2050
HpyCH4IV	ACGT	5 cut(s)	203, 683, 982, 1410, 1545
HpyCH4V	TGCA	9 cut(s)	104, 676, 967, 1130, 1177, 1240, 1339, 1526, 1586
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 446, 817, 1063, 1136, 1345, 1595
HpyF3I	CTNAG	6 cut(s)	1050, 1067, 1098, 1124, 1229, 1275
HpySE526I	ACGT	5 cut(s)	203, 683, 982, 1410, 1545
Hsp92II	CATG	6 cut(s)	244, 676, 1258, 1478, 1576, 1797
HspAI	GCGC	1 cut(s)	1478
KpnI	GGTACC	1 cut(s)	1881
KspAI	GTTAAC	1 cut(s)	933
Kzo9I	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
LguI	GCTCTTC	2 cut(s)	537, 1718
LmnI	GCTCC	2 cut(s)	326, 727
Lsp1109I	GCAGC	8 cut(s)	88, 742, 1167, 1189, 1570, 1585, 1598, 1648
LweI	GCATC	6 cut(s)	113, 132, 572, 685, 898, 956
MaeI	CTAG	5 cut(s)	21, 68, 821, 1656, 1734
MaeII	ACGT	5 cut(s)	203, 683, 982, 1410, 1545
MaeIII	GTNAC	6 cut(s)	209, 1033, 1406, 1414, 1432, 1752
MalI	GATC	8 cut(s)	154, 245, 399, 459, 646, 1245, 1269, 2071
MbiI	CCGCTC	1 cut(s)	1728
MboI	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
MfeI	CAATTG	1 cut(s)	1359
MflI	RGATCY	3 cut(s)	397, 457, 1243
MhlI	GDGCHC	1 cut(s)	1468
MlsI	TGGCCA	1 cut(s)	492
MluNI	TGGCCA	1 cut(s)	492
MlyI	GAGTC	3 cut(s)	357, 950, 1805
MmeI	TCCRAC	1 cut(s)	1563
Mox20I	TGGCCA	1 cut(s)	492
Mph1103I	ATGCAT	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	801
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	6 cut(s)	179, 704, 849, 932, 1206, 1422
MslI	CAYNNNNRTG	3 cut(s)	498, 1191, 1259
Msp20I	TGGCCA	1 cut(s)	492
MspA1I	CMGCKG	2 cut(s)	1180, 1772
MspI	CCGG	1 cut(s)	1882
MspR9I	CCNGG	6 cut(s)	251, 324, 989, 1319, 1882, 1883
MunI	CAATTG	1 cut(s)	1359
MvaI	CCWGG	4 cut(s)	251, 324, 989, 1319
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	7 cut(s)	70, 446, 817, 1063, 1136, 1345, 1595
NciI	CCSGG	2 cut(s)	1882, 1883
NdeII	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
NlaIII	CATG	6 cut(s)	244, 676, 1258, 1478, 1576, 1797
NlaIV	GGNNCC	7 cut(s)	321, 459, 723, 1150, 1465, 1879, 1908
NmuCI	GTSAC	3 cut(s)	1406, 1414, 1432
NsiI	ATGCAT	1 cut(s)	678
NspI	RCATGY	2 cut(s)	1258, 1797
PagI	TCATGA	1 cut(s)	240
PceI	AGGCCT	1 cut(s)	1072
PciI	ACATGT	1 cut(s)	1254
PciSI	GCTCTTC	2 cut(s)	537, 1718
PcsI	WCGNNNNNNNCGW	1 cut(s)	1276
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	5 cut(s)	283, 335, 838, 919, 1299
PflFI	GACNNNGTC	2 cut(s)	1412, 1532
PfoI	TCCNGGA	2 cut(s)	987, 1317
PleI	GAGTC	3 cut(s)	357, 949, 1805
PpsI	GAGTC	3 cut(s)	357, 949, 1805
PscI	ACATGT	1 cut(s)	1254
PshBI	ATTAAT	1 cut(s)	1422
Psp1406I	AACGTT	1 cut(s)	1545
Psp6I	CCWGG	4 cut(s)	249, 322, 987, 1317
PspFI	CCCAGC	3 cut(s)	725, 1762, 1768
PspGI	CCWGG	4 cut(s)	249, 322, 987, 1317
PspN4I	GGNNCC	7 cut(s)	321, 459, 723, 1150, 1465, 1879, 1908
PspPI	GGNCC	5 cut(s)	406, 844, 1149, 1907, 2030
PstI	CTGCAG	2 cut(s)	1179, 1588
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	397, 457, 1243
PsyI	GACNNNGTC	2 cut(s)	1412, 1532
PvuII	CAGCTG	1 cut(s)	1180
RsaI	GTAC	4 cut(s)	164, 1867, 1879, 1985
RsaNI	GTAC	4 cut(s)	163, 1866, 1878, 1984
RseI	CAYNNNNRTG	3 cut(s)	498, 1191, 1259
SapI	GCTCTTC	2 cut(s)	537, 1718
SaqAI	TTAA	6 cut(s)	179, 704, 849, 932, 1206, 1422
Sau3AI	GATC	8 cut(s)	152, 243, 397, 457, 644, 1243, 1267, 2069
Sau96I	GGNCC	5 cut(s)	406, 844, 1149, 1907, 2030
SchI	GAGTC	3 cut(s)	357, 950, 1805
ScrFI	CCNGG	6 cut(s)	251, 324, 989, 1319, 1882, 1883
SduI	GDGCHC	1 cut(s)	1468
SfaNI	GCATC	6 cut(s)	113, 132, 572, 685, 898, 956
SfcI	CTRYAG	2 cut(s)	1175, 1584
SinI	GGWCC	3 cut(s)	844, 1149, 1907
SmaI	CCCGGG	1 cut(s)	1883
SmiMI	CAYNNNNRTG	3 cut(s)	498, 1191, 1259
SpeI	ACTAGT	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	1072
SspMI	CTAG	5 cut(s)	21, 68, 821, 1656, 1734
StuI	AGGCCT	1 cut(s)	1072
StyD4I	CCNGG	6 cut(s)	249, 322, 987, 1317, 1880, 1881
StyI	CCWWGG	1 cut(s)	1605
TaaI	ACNGT	4 cut(s)	131, 930, 1988, 2050
TaiI	ACGT	5 cut(s)	206, 686, 985, 1413, 1548
TaqI	TCGA	5 cut(s)	151, 200, 555, 1352, 1614
TaqII	GACCGA	1 cut(s)	1924
TatI	WGTACW	1 cut(s)	1983
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	5 cut(s)	283, 335, 838, 919, 1299
Tru1I	TTAA	6 cut(s)	179, 704, 849, 932, 1206, 1422
Tru9I	TTAA	6 cut(s)	179, 704, 849, 932, 1206, 1422
TscAI	CASTG	8 cut(s)	66, 134, 140, 1106, 1159, 1443, 1993, 2053
TseFI	GTSAC	3 cut(s)	1406, 1414, 1432
TseI	GCWGC	9 cut(s)	5, 101, 755, 1177, 1180, 1583, 1586, 1598, 1661
Tsp45I	GTSAC	3 cut(s)	1406, 1414, 1432
TspGWI	ACGGA	3 cut(s)	470, 1753, 1931
TspMI	CCCGGG	1 cut(s)	1881
TspRI	CASTG	8 cut(s)	66, 134, 140, 1106, 1159, 1443, 1993, 2053
Tth111I	GACNNNGTC	2 cut(s)	1412, 1532
VpaK11BI	GGWCC	3 cut(s)	844, 1149, 1907
VspI	ATTAAT	1 cut(s)	1422
XapI	RAATTY	4 cut(s)	475, 771, 1507, 1567
XbaI	TCTAGA	1 cut(s)	1733
XceI	RCATGY	2 cut(s)	1258, 1797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmaI	CCCGGG	1 cut(s)	1881
XmnI	GAANNNNTTC	1 cut(s)	801
XspI	CTAG	5 cut(s)	21, 68, 821, 1656, 1734
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.