Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0022393

Physical Location & Seq

Genomic Coordinates Reverse (-)

353331 .. 354375

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1003300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTTTGCCATCAAATTGTCAGTGGCTTCTGCCAAGTGAGGGAGGTTGCTTGGAGGCAGAAGGCAATGAGAAGACATGGAGATTTTGGTCCATACACATTGGATTTCACCTCAAGTAGTCGGTATATAGTGATTGGTGGGCGCAAGGGTCATCTGGCTATTGTAGACTTGATGAATACGAGGCTGGTTAAAAAATTTCAGGTTGGGGAAACAGTGCGTGATGTTGTGTTCTTGGACACTCATCTCATGAGTTCTTTGCTGCAGCCCAGGAAAAGTATGAGACTGTTTGCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

99

Amino Acids

11.3

Weight (kDa)

10.36

Isoelectric Point (pI)

23.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022393)

Species	Orthologous Gene IDs
malus_domestica	MD08G1003300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336791 RchiOBHm_Chr4g0414881
rosa_samantha	Rh5BG159400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	259, 262
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	246, 274
BccI	CCATC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	260, 263
BlsI	GCNGC	2 cut(s)	261, 264
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	246, 274
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	214, 285
BstHHI	GCGC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	274
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	246, 274
BstV2I	GAAGAC	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	28, 219
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	2 cut(s)	77, 247
CviJI	RGCY	4 cut(s)	27, 158, 184, 265
CviKI_1	RGCY	4 cut(s)	27, 158, 184, 265
Eco47I	GGWCC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	266
FaeI	CATG	2 cut(s)	80, 250
FaiI	YATR	6 cut(s)	78, 94, 126, 128, 248, 278
FatI	CATG	2 cut(s)	76, 246
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	260, 263
Fsp4HI	GCNGC	2 cut(s)	260, 263
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	260, 263
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	80, 250
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	214, 285
HpyCH4V	TGCA	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	80, 250
HspAI	GCGC	1 cut(s)	142
LpnPI	CCDG	5 cut(s)	140, 170, 185, 253, 280
Lsp1109I	GCAGC	2 cut(s)	246, 274
MboII	GAAGA	1 cut(s)	84
MluCI	AATT	2 cut(s)	15, 194
MnlI	CCTC	5 cut(s)	33, 37, 48, 121, 174
MseI	TTAA	2 cut(s)	189, 295
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
NlaIII	CATG	2 cut(s)	80, 250
PagI	TCATGA	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	261, 264
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	189, 295
SatI	GCNGC	2 cut(s)	260, 263
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	3 cut(s)	48, 113, 204
SfcI	CTRYAG	1 cut(s)	260
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	15, 194
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	2 cut(s)	214, 285
TasI	AATT	2 cut(s)	15, 194
Tru1I	TTAA	2 cut(s)	189, 295
Tru9I	TTAA	2 cut(s)	189, 295
TscAI	CASTG	2 cut(s)	28, 219
TseI	GCWGC	2 cut(s)	259, 262
TspDTI	ATGAA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	28, 219
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.