Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022393

Physical Location & Seq

Genomic Coordinates Forward (+)

28491227 .. 28493820

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTTGGTAGACAAACTCACAGCGAGCCCAACTCAAGAAGCAAACCAAGATCCCGCTCTGTGCAGGCTGGATTTCACGCCAAGCAGTCGATACATGATGGTCGGTGGACACAAGGGCCATCTAGCTATTGTAGACATGAAGCAAATGAGCCTGATCAAAGAATTTCAGGGAGACAGTTCTTGCATGATGAGACGATGTTTGCTGCAGCCCGGAAAAAGTATAAAACCATTTTCTGTAATTCATTATTGGCCTGAGGTTGATATAATTAAAGTTAGTGTTCTTTTAACTGGTTGTCCTTCAAATTCACATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005732 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BING4CT WD40

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

8.41

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0022393)

Species	Orthologous Gene IDs
malus_domestica	MD08G1003300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0336791 RchiOBHm_Chr4g0414881
rosa_samantha	Rh5BG159400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	56
AccI	GTMKAC	2 cut(s)	9, 132
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	161, 301
AgsI	TTSAA	1 cut(s)	300
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	2 cut(s)	165, 184
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	115, 248
ApeKI	GCWGC	2 cut(s)	202, 205
ApoI	RAATTY	2 cut(s)	161, 301
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	210
AxyI	CCTNAGG	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	189, 217
BccI	CCATC	2 cut(s)	91, 126
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	165, 184
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	203, 206
BlsI	GCNGC	2 cut(s)	204, 207
Bme1390I	CCNGG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	189, 217
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	117, 250
BsiSI	CCGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	165, 184
BsmBI	CGTCTC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	117, 250
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	49, 153
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	117, 250
BspCNI	CTCAG	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	207
BspPI	GGATC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	49, 153
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	2 cut(s)	25, 65
BstDEI	CTNAG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	52, 156
BstMAI	GTCTC	2 cut(s)	165, 184
BstMBI	GATC	2 cut(s)	49, 153
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	189, 217
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	117, 250
Cac8I	GCNNGC	2 cut(s)	25, 65
Cfr13I	GGNCC	1 cut(s)	115
CviAII	CATG	4 cut(s)	94, 136, 184, 308
CviJI	RGCY	7 cut(s)	27, 67, 117, 125, 150, 208, 250
CviKI_1	RGCY	7 cut(s)	27, 67, 117, 125, 150, 208, 250
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	51, 155
DpnII	GATC	2 cut(s)	49, 153
Eco24I	GRGCYC	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	252
EcoT38I	GRGCYC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	4 cut(s)	97, 139, 187, 311
FaiI	YATR	6 cut(s)	95, 137, 185, 221, 263, 309
FatI	CATG	4 cut(s)	93, 135, 183, 307
FauI	CCCGC	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	2 cut(s)	9, 132
Fnu4HI	GCNGC	2 cut(s)	203, 206
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	203, 206
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	203, 206
HaeIII	GGCC	2 cut(s)	117, 250
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	4 cut(s)	97, 139, 187, 311
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	3 cut(s)	10, 107, 133
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	3 cut(s)	10, 107, 133
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	63, 183, 205
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	97, 139, 187, 311
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	49, 153
LpnPI	CCDG	7 cut(s)	49, 53, 152, 164, 223, 264, 273
Lsp1109I	GCAGC	2 cut(s)	189, 217
MaeI	CTAG	1 cut(s)	122
MalI	GATC	2 cut(s)	51, 155
MbiI	CCGCTC	1 cut(s)	56
MboI	GATC	2 cut(s)	49, 153
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	4 cut(s)	161, 237, 264, 301
MnlI	CCTC	1 cut(s)	247
MseI	TTAA	2 cut(s)	267, 284
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	210
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	49, 153
NlaIII	CATG	4 cut(s)	97, 139, 187, 311
PkrI	GCNGC	2 cut(s)	204, 207
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	49
SaqAI	TTAA	2 cut(s)	267, 284
SatI	GCNGC	2 cut(s)	203, 206
Sau3AI	GATC	2 cut(s)	49, 153
Sau96I	GGNCC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	2 cut(s)	127, 258
SfcI	CTRYAG	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	4 cut(s)	161, 237, 264, 301
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	88
TasI	AATT	4 cut(s)	161, 237, 264, 301
Tru1I	TTAA	2 cut(s)	267, 284
Tru9I	TTAA	2 cut(s)	267, 284
TseI	GCWGC	2 cut(s)	202, 205
TspDTI	ATGAA	2 cut(s)	152, 230
XapI	RAATTY	2 cut(s)	161, 301
XmiI	GTMKAC	2 cut(s)	9, 132
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.