MD08G1028100.v1.1

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
2045208 .. 2048039
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1028100.v1.1.491

Sequence Viewer

Length: 1290 bp
ATGAAGCATTTGGGTGTCATGTTCTTGGGGGCTCTGCTGTTCATCTTCCAGAACCATGGAGTTTTAGCGGAAGAAGGGTTTATGAAAACCAGAGGAGTGCAGCTTCTGCTGAACGGAGTTCCGTACTATGGACACGGCTTCAATGCCTACTGGTTGATGTACATGGGGACCGACCCTTCTGAGAGGGTGAAAGTTTCGTCTGCCCTCCGAGAGGCGAAGGAACATGGGCTCACAATTGCAAGGACTTGGGCCTTCGCCGATGGCGGATACAGAGCTCTGCAGACCTCTCCGGGGTCGTACGACGAGAAAACTTTTCGGGGGTTGGATTTTGTGATATCTGAGGCAAAGAAGAGTGGGATCAAGGTGATACTGAGTTTGGTGAACAACTATGAGAACTATGGAGGCAAGAAACAGTATGTGGAATGGGCTAGAAGCCAAGGCCAATCTCTATCTTCTGAAGATGATTTCTATACCAACTCTCGCGTGAAGGGATTTTACAAAAATCATATCAAGACTGTTCTTACGAGGATCAACACTCTGACTGGAGTTGCTTACAAAGATGAACCAACCATAATGGCTTGGGAGCTTATGAATGAGCCAAGATGCACTTCAGATCCATCTGGAAAAACCATTCAGGCTTGGATAACGGAAATGGCGTCATACTTGAAATCCATAGATGGAAATCATTTGCTAGAAGTTGGCCTTGAAGGGTTTTATGGATCATCAAATCCGAAAAAAAATCCGAATAACTATCAAATTGGAACTGATTTCATTGCGAATAATCAGATCCGTGACATTGACTTTGCCACTGTCCACGCATATCCCGATCAATGGTTAACCGGAGCAGGTTACGAAGATCAAGTCTCTTTTTTGAACAGTTGGGTCAGTGGTCACATCCAGGATGCACAAAACATTCTGAAGAAGCCAGTTCTGTTTGCGGAGTTTGGAAGGTCTTTGAAAGAGTCGGGTTATACCACAAGCCAGCGTGACCGGATTTTCACTATAGTCTACTCGGGTATCTACTCGTCGGCTAGGGGTGGAGGTGCTGCCGTTGGCGGCTTATTCTGGCAACTTCTGGCCGAAGAAATGGACAATTTCCAAGACGGGTATGGGATTGTGTTGAGCGAGAGCTCCTCGACAGTTGGTTTGATTGCCGAGGAGTCTCGGAAGCTTAATGAGATTCGGAAGATGTATGCCAGGTTGAAAAACATCGAGAAGTGGAAGCGAGCGAGGGAAGTTCGAAGGGATCGGTTCTGGTCTGGGAACAAGGCCAATGGTACAGAAAACTGA

Protein Analysis

430

Amino Acids

48.35

Weight (kDa)

8.57

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH5_mannosidase PF26410 27 - 357 1.3e-52 GH family 5 beta-mannosidase-like
Cellulase PF00150 66 - 330 9.7e-15 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020837)

Species Orthologous Gene IDs
malus_domestica MD08G1028100.v1.1 MD15G1024000.v1.1
prunus_persica Prupe.1G376300_v2.0.a1
pyrus_communis pycom08g02240 pycom15g02060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 836
AccI GTMKAC 1 cut(s) 1008
AccII CGCG 1 cut(s) 483
AciI CCGC 4 cut(s) 68, 264, 938, 1056
AclWI GGATC 6 cut(s) 365, 536, 608, 727, 781, 1254
AcoI YGGCCR 1 cut(s) 1077
AcuI CTGAAG 3 cut(s) 477, 594, 938
AcyI GRCGYC 1 cut(s) 656
AfaI GTAC 4 cut(s) 125, 161, 299, 1279
AfiI CCNNNNNNNGG 4 cut(s) 128, 211, 291, 831
AgsI TTSAA 6 cut(s) 142, 667, 707, 874, 958, 1204
AjnI CCWGG 2 cut(s) 897, 1196
AjuI GAANNNNNNNTTGG 2 cut(s) 592, 624
AluBI AGCT 5 cut(s) 103, 275, 586, 1131, 1171
AluI AGCT 5 cut(s) 103, 275, 586, 1131, 1171
Alw21I GWGCWC 2 cut(s) 277, 1133
Alw26I GTCTC 2 cut(s) 868, 1167
AlwI GGATC 6 cut(s) 365, 536, 608, 727, 781, 1254
AlwNI CAGNNNCTG 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 1012
AoxI GGCC 5 cut(s) 249, 439, 700, 1077, 1269
ApeKI GCWGC 2 cut(s) 100, 1046
ArsI GACNNNNNNTTYG 6 cut(s) 785, 817, 846, 878, 1129, 1161
AspS9I GGNCC 2 cut(s) 168, 249
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 199, 376, 391
AsuII TTCGAA 1 cut(s) 1240
AvaI CYCGRG 1 cut(s) 1012
AvaII GGWCC 1 cut(s) 168
BaeI ACNNNNGTAYC 2 cut(s) 1000, 1033
BanII GRGCYC 4 cut(s) 34, 231, 277, 1133
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
Bbv12I GWGCWC 2 cut(s) 277, 1133
BbvI GCAGC 2 cut(s) 112, 1033
BccI CCATC 3 cut(s) 254, 625, 671
BceAI ACGGC 2 cut(s) 151, 1034
BciT130I CCWGG 2 cut(s) 899, 1198
BciVI GTATCC 1 cut(s) 260
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 868, 1167
BfaI CTAG 3 cut(s) 429, 692, 1032
BfmI CTRYAG 2 cut(s) 278, 1002
BfuAI ACCTGC 1 cut(s) 836
BfuI GTATCC 1 cut(s) 260
BisI GCNGC 3 cut(s) 101, 1047, 1057
BlsI GCNGC 3 cut(s) 102, 1048, 1058
Bme1390I CCNGG 3 cut(s) 291, 899, 1198
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 1012
BmgT120I GGNCC 2 cut(s) 168, 249
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 3 cut(s) 291, 899, 1198
BmsI GCATC 2 cut(s) 593, 892
BplI GAGNNNNNCTC 2 cut(s) 1118, 1150
BpmI CTGGAG 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 1240
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 656
BsaJI CCNNGG 4 cut(s) 55, 290, 436, 1155
BsaWI WCCGGW 2 cut(s) 839, 990
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 211, 291, 831
Bse1I ACTGG 3 cut(s) 155, 547, 926
Bse3DI GCAATG 1 cut(s) 771
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 2 cut(s) 899, 1198
BseDI CCNNGG 4 cut(s) 55, 290, 436, 1155
BseGI GGATG 2 cut(s) 894, 907
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 4 cut(s) 128, 211, 291, 831
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 3 cut(s) 171, 330, 362
BseNI ACTGG 3 cut(s) 155, 547, 926
BseRI GAGGAG 3 cut(s) 108, 1123, 1172
BseXI GCAGC 2 cut(s) 112, 1033
BsgI GTGCAG 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 5 cut(s) 251, 441, 702, 1079, 1271
BsiHKAI GWGCWC 2 cut(s) 277, 1133
BsiHKCI CYCGRG 1 cut(s) 1012
BsiSI CCGG 3 cut(s) 290, 840, 991
BsiWI CGTACG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 4 cut(s) 128, 211, 291, 831
BsmAI GTCTC 2 cut(s) 868, 1167
BsmFI GGGAC 1 cut(s) 181
BsnI GGCC 5 cut(s) 251, 441, 702, 1079, 1271
BsoBI CYCGRG 1 cut(s) 1012
Bsp119I TTCGAA 1 cut(s) 1240
Bsp1286I GDGCHC 4 cut(s) 34, 231, 277, 1133
Bsp1407I TGTACA 1 cut(s) 159
Bsp143I GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
Bsp19I CCATGG 1 cut(s) 55
BspACI CCGC 4 cut(s) 68, 264, 938, 1056
BspANI GGCC 5 cut(s) 251, 441, 702, 1079, 1271
BspCNI CTCAG 3 cut(s) 172, 331, 363
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 282
BspMI ACCTGC 1 cut(s) 836
BspPI GGATC 6 cut(s) 365, 536, 608, 727, 781, 1254
BspT104I TTCGAA 1 cut(s) 1240
BsrDI GCAATG 1 cut(s) 771
BsrGI TGTACA 1 cut(s) 159
BsrI ACTGG 3 cut(s) 155, 547, 926
BssECI CCNNGG 4 cut(s) 55, 290, 436, 1155
BssMI GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
BssNI GRCGYC 1 cut(s) 656
BssT1I CCWWGG 2 cut(s) 55, 436
Bst2UI CCWGG 2 cut(s) 899, 1198
Bst4CI ACNGT 5 cut(s) 414, 517, 811, 878, 1141
Bst6I CTCTTC 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 656
BstAPI GCANNNNNTGC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 1240
BstC8I GCNNGC 2 cut(s) 983, 1227
BstDEI CTNAG 3 cut(s) 180, 339, 371
BstDSI CCRYGG 1 cut(s) 55
BstENI CCTNNNNNAGG 1 cut(s) 209
BstF5I GGATG 2 cut(s) 894, 907
BstFNI CGCG 1 cut(s) 483
BstKTI GATC 8 cut(s) 360, 531, 616, 722, 789, 829, 859, 1249
BstMAI GTCTC 2 cut(s) 868, 1167
BstMBI GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 2 cut(s) 899, 1198
BstSCI CCNGG 3 cut(s) 289, 897, 1196
BstSFI CTRYAG 2 cut(s) 278, 1002
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 112, 1033
BstX2I RGATCY 2 cut(s) 613, 786
BstXI CCANNNNNNTGG 1 cut(s) 56
BstYI RGATCY 2 cut(s) 613, 786
BsuI GTATCC 1 cut(s) 260
BsuRI GGCC 5 cut(s) 251, 441, 702, 1079, 1271
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 2 cut(s) 894, 907
BtsIMutI CAGTG 2 cut(s) 807, 892
BveI ACCTGC 1 cut(s) 836
Cac8I GCNNGC 2 cut(s) 983, 1227
CaiI CAGNNNCTG 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 168, 249
CseI GACGC 1 cut(s) 645
Csp6I GTAC 4 cut(s) 124, 160, 298, 1278
CviAII CATG 4 cut(s) 19, 56, 163, 224
CviQI GTAC 4 cut(s) 124, 160, 298, 1278
DdeI CTNAG 3 cut(s) 180, 339, 371
DpnI GATC 8 cut(s) 359, 530, 615, 721, 788, 828, 858, 1248
DpnII GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
EciI GGCGGA 1 cut(s) 279
Ecl136II GAGCTC 2 cut(s) 275, 1131
Eco130I CCWWGG 2 cut(s) 55, 436
Eco24I GRGCYC 4 cut(s) 34, 231, 277, 1133
Eco32I GATATC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 2 cut(s) 275, 1131
Eco57I CTGAAG 3 cut(s) 477, 594, 938
Eco88I CYCGRG 1 cut(s) 1012
EcoICRI GAGCTC 2 cut(s) 275, 1131
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 897, 1196
EcoRV GATATC 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 55, 436
EcoT38I GRGCYC 4 cut(s) 34, 231, 277, 1133
ErhI CCWWGG 2 cut(s) 55, 436
FaeI CATG 4 cut(s) 22, 59, 166, 227
FalI AAGNNNNNCTT 4 cut(s) 592, 624, 687, 719
FaqI GGGAC 1 cut(s) 181
FatI CATG 4 cut(s) 18, 55, 162, 223
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 3 cut(s) 101, 1047, 1057
FokI GGATG 2 cut(s) 881, 914
FriOI GRGCYC 4 cut(s) 34, 231, 277, 1133
Fsp4HI GCNGC 3 cut(s) 101, 1047, 1057
FspBI CTAG 3 cut(s) 429, 692, 1032
GluI GCNGC 3 cut(s) 101, 1047, 1057
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 5 cut(s) 251, 441, 702, 1079, 1271
HapII CCGG 3 cut(s) 290, 840, 991
HgaI GACGC 1 cut(s) 645
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 4 cut(s) 22, 59, 166, 227
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HindIII AAGCTT 1 cut(s) 1169
HinfI GANTC 3 cut(s) 962, 1160, 1180
HpaI GTTAAC 1 cut(s) 837
HpaII CCGG 3 cut(s) 290, 840, 991
HphI GGTGA 3 cut(s) 199, 376, 391
Hpy166II GTNNAC 4 cut(s) 382, 814, 837, 1009
Hpy188III TCNNGA 5 cut(s) 49, 511, 621, 824, 1213
Hpy8I GTNNAC 4 cut(s) 382, 814, 837, 1009
Hpy99I CGWCG 2 cut(s) 305, 1030
HpyAV CCTTC 8 cut(s) 68, 186, 211, 262, 481, 701, 942, 1236
HpyCH4III ACNGT 5 cut(s) 414, 517, 811, 878, 1141
HpyCH4V TGCA 5 cut(s) 100, 239, 280, 606, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 3 cut(s) 180, 339, 371
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 4 cut(s) 22, 59, 166, 227
KspAI GTTAAC 1 cut(s) 837
Kzo9I GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
LmnI GCTCC 3 cut(s) 583, 842, 1136
Lsp1109I GCAGC 2 cut(s) 112, 1033
LweI GCATC 2 cut(s) 593, 892
MaeI CTAG 3 cut(s) 429, 692, 1032
MaeIII GTNAC 4 cut(s) 791, 848, 890, 986
MalI GATC 8 cut(s) 359, 530, 615, 721, 788, 828, 858, 1248
MboI GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
MboII GAAGA 9 cut(s) 37, 83, 361, 444, 470, 866, 931, 1094, 1198
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 2 cut(s) 613, 786
MhlI GDGCHC 4 cut(s) 34, 231, 277, 1133
MluCI AATT 3 cut(s) 234, 756, 1093
MlyI GAGTC 2 cut(s) 971, 1169
MmeI TCCRAC 1 cut(s) 303
MseI TTAA 2 cut(s) 836, 1173
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 3 cut(s) 290, 840, 991
MspR9I CCNGG 3 cut(s) 291, 899, 1198
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 2 cut(s) 899, 1198
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 55
NdeII GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
NlaIII CATG 4 cut(s) 22, 59, 166, 227
NlaIV GGNNCC 1 cut(s) 169
NmeAIII GCCGAG 1 cut(s) 1180
NmuCI GTSAC 3 cut(s) 791, 890, 986
NspV TTCGAA 1 cut(s) 1240
PcsI WCGNNNNNNNCGW 2 cut(s) 653, 822
PfeI GAWTC 1 cut(s) 1180
Pfl23II CGTACG 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 897
PkrI GCNGC 3 cut(s) 102, 1048, 1058
PleI GAGTC 2 cut(s) 970, 1168
PpsI GAGTC 2 cut(s) 970, 1168
Psp124BI GAGCTC 2 cut(s) 277, 1133
Psp6I CCWGG 2 cut(s) 897, 1196
PspGI CCWGG 2 cut(s) 897, 1196
PspLI CGTACG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 168, 249
PstI CTGCAG 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 2 cut(s) 613, 786
RsaI GTAC 4 cut(s) 125, 161, 299, 1279
RsaNI GTAC 4 cut(s) 124, 160, 298, 1278
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 2 cut(s) 277, 1133
SaqAI TTAA 2 cut(s) 836, 1173
SatI GCNGC 3 cut(s) 101, 1047, 1057
Sau3AI GATC 8 cut(s) 357, 528, 613, 719, 786, 826, 856, 1246
Sau96I GGNCC 2 cut(s) 168, 249
SchI GAGTC 2 cut(s) 971, 1169
ScrFI CCNGG 3 cut(s) 291, 899, 1198
SduI GDGCHC 4 cut(s) 34, 231, 277, 1133
SfaNI GCATC 2 cut(s) 593, 892
SfcI CTRYAG 2 cut(s) 278, 1002
SfuI TTCGAA 1 cut(s) 1240
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 3 cut(s) 234, 756, 1093
SsiI CCGC 4 cut(s) 68, 264, 938, 1056
SspMI CTAG 3 cut(s) 429, 692, 1032
SstI GAGCTC 2 cut(s) 277, 1133
StyD4I CCNGG 3 cut(s) 289, 897, 1196
StyI CCWWGG 2 cut(s) 55, 436
TaaI ACNGT 5 cut(s) 414, 517, 811, 878, 1141
TaqI TCGA 3 cut(s) 1136, 1212, 1240
TaqII GACCGA 1 cut(s) 185
TasI AATT 3 cut(s) 234, 756, 1093
TatI WGTACW 1 cut(s) 159
TauI GCSGC 1 cut(s) 1059
TfiI GAWTC 1 cut(s) 1180
Tru1I TTAA 2 cut(s) 836, 1173
Tru9I TTAA 2 cut(s) 836, 1173
TscAI CASTG 2 cut(s) 814, 892
TseFI GTSAC 3 cut(s) 791, 890, 986
TseI GCWGC 2 cut(s) 100, 1046
Tsp45I GTSAC 3 cut(s) 791, 890, 986
TspDTI ATGAA 6 cut(s) 17, 31, 98, 576, 605, 760
TspGWI ACGGA 4 cut(s) 111, 129, 662, 779
TspRI CASTG 2 cut(s) 814, 892
VpaK11BI GGWCC 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XmiI GTMKAC 1 cut(s) 1008
XspI CTAG 3 cut(s) 429, 692, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.